Strain Fitness in Sphingobium sp. HT1-2 around GFF598

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF597 and GFF598 are separated by 53 nucleotidesGFF598 and GFF599 are separated by 170 nucleotidesGFF599 and GFF600 are separated by 32 nucleotidesGFF600 and GFF601 overlap by 4 nucleotidesGFF601 and GFF602 are separated by 35 nucleotides GFF597 - Bll4295 protein, at 600,860 to 602,206 GFF597 GFF598 - Protein-disulfide isomerase, at 602,260 to 602,970 GFF598 GFF599 - LSU ribosomal protein L34p, at 603,141 to 603,275 GFF599 GFF600 - Ribonuclease P protein component (EC 3.1.26.5), at 603,308 to 603,709 GFF600 GFF601 - Membrane protein insertion efficiency factor YidD, at 603,706 to 603,918 GFF601 GFF602 - Inner membrane protein translocase and chaperone YidC, long form, at 603,954 to 605,660 GFF602 Position (kb) 602 603Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 601.271 kb on - strand, within GFF597at 601.271 kb on - strand, within GFF597at 601.284 kb on + strand, within GFF597at 601.297 kb on - strand, within GFF597at 601.320 kb on - strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.397 kb on + strand, within GFF597at 601.410 kb on - strand, within GFF597at 601.415 kb on - strand, within GFF597at 601.462 kb on + strand, within GFF597at 601.470 kb on - strand, within GFF597at 601.497 kb on - strand, within GFF597at 601.504 kb on + strand, within GFF597at 601.504 kb on + strand, within GFF597at 601.521 kb on + strand, within GFF597at 601.522 kb on + strand, within GFF597at 601.522 kb on + strand, within GFF597at 601.524 kb on - strand, within GFF597at 601.525 kb on + strand, within GFF597at 601.525 kb on + strand, within GFF597at 601.530 kb on - strand, within GFF597at 601.530 kb on - strand, within GFF597at 601.553 kb on - strand, within GFF597at 601.555 kb on + strand, within GFF597at 601.555 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.603 kb on + strand, within GFF597at 601.634 kb on + strand, within GFF597at 601.642 kb on - strand, within GFF597at 601.644 kb on - strand, within GFF597at 601.744 kb on + strand, within GFF597at 601.750 kb on - strand, within GFF597at 601.759 kb on + strand, within GFF597at 601.787 kb on + strand, within GFF597at 601.845 kb on - strand, within GFF597at 601.887 kb on + strand, within GFF597at 601.887 kb on + strand, within GFF597at 601.895 kb on - strand, within GFF597at 601.895 kb on - strand, within GFF597at 601.897 kb on + strand, within GFF597at 601.900 kb on - strand, within GFF597at 601.905 kb on - strand, within GFF597at 601.994 kb on - strand, within GFF597at 602.036 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.041 kb on + strand, within GFF597at 602.044 kb on - strand, within GFF597at 602.044 kb on - strand, within GFF597at 602.044 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.049 kb on - strand, within GFF597at 602.079 kb on + strandat 602.079 kb on + strandat 602.084 kb on + strandat 602.084 kb on + strandat 602.087 kb on - strandat 602.089 kb on + strandat 602.094 kb on + strandat 602.152 kb on + strandat 602.164 kb on + strandat 602.165 kb on - strandat 602.199 kb on + strandat 602.209 kb on + strandat 602.217 kb on - strandat 602.217 kb on - strandat 602.217 kb on - strandat 602.236 kb on + strandat 602.244 kb on - strandat 602.262 kb on - strandat 602.368 kb on + strand, within GFF598at 602.373 kb on + strand, within GFF598at 602.373 kb on + strand, within GFF598at 602.381 kb on + strand, within GFF598at 602.429 kb on - strand, within GFF598at 602.510 kb on + strand, within GFF598at 602.569 kb on + strand, within GFF598at 602.589 kb on + strand, within GFF598at 602.607 kb on + strand, within GFF598at 602.607 kb on + strand, within GFF598at 602.607 kb on + strand, within GFF598at 602.615 kb on - strand, within GFF598at 602.616 kb on + strand, within GFF598at 602.629 kb on + strand, within GFF598at 602.637 kb on - strand, within GFF598at 602.659 kb on - strand, within GFF598at 602.697 kb on + strand, within GFF598at 602.749 kb on - strand, within GFF598at 602.762 kb on + strand, within GFF598at 602.781 kb on + strand, within GFF598at 602.838 kb on + strand, within GFF598at 602.846 kb on - strand, within GFF598at 602.893 kb on - strand, within GFF598at 602.905 kb on + strandat 602.913 kb on - strandat 602.980 kb on - strandat 603.002 kb on + strandat 603.002 kb on + strandat 603.036 kb on - strandat 603.632 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.691 kb on - strandat 603.723 kb on + strandat 603.740 kb on + strand, within GFF601at 603.740 kb on + strand, within GFF601at 603.748 kb on - strand, within GFF601at 603.748 kb on - strand, within GFF601at 603.768 kb on + strand, within GFF601at 603.777 kb on - strand, within GFF601at 603.777 kb on - strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.792 kb on + strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.856 kb on + strand, within GFF601at 603.882 kb on + strand, within GFF601at 603.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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601,271 - GFF597 0.31 +0.6
601,271 - GFF597 0.31 -1.3
601,284 + GFF597 0.31 -0.2
601,297 - GFF597 0.32 -1.3
601,320 - GFF597 0.34 -0.1
601,383 + GFF597 0.39 +1.0
601,383 + GFF597 0.39 +0.6
601,383 + GFF597 0.39 -0.1
601,383 + GFF597 0.39 -1.5
601,397 + GFF597 0.40 +1.8
601,410 - GFF597 0.41 +0.5
601,415 - GFF597 0.41 +0.1
601,462 + GFF597 0.45 +1.7
601,470 - GFF597 0.45 -0.2
601,497 - GFF597 0.47 -1.8
601,504 + GFF597 0.48 +1.8
601,504 + GFF597 0.48 -1.6
601,521 + GFF597 0.49 +0.7
601,522 + GFF597 0.49 +0.1
601,522 + GFF597 0.49 -1.3
601,524 - GFF597 0.49 -0.0
601,525 + GFF597 0.49 +0.9
601,525 + GFF597 0.49 -2.0
601,530 - GFF597 0.50 +0.3
601,530 - GFF597 0.50 -1.0
601,553 - GFF597 0.51 -0.2
601,555 + GFF597 0.52 +0.1
601,555 + GFF597 0.52 -0.2
601,588 + GFF597 0.54 +0.9
601,588 + GFF597 0.54 -0.2
601,588 + GFF597 0.54 -0.8
601,588 + GFF597 0.54 -2.1
601,596 - GFF597 0.55 -0.5
601,596 - GFF597 0.55 +0.4
601,596 - GFF597 0.55 +1.9
601,596 - GFF597 0.55 +0.7
601,603 + GFF597 0.55 +0.1
601,634 + GFF597 0.57 +1.4
601,642 - GFF597 0.58 -0.1
601,644 - GFF597 0.58 -0.4
601,744 + GFF597 0.66 -0.4
601,750 - GFF597 0.66 +0.0
601,759 + GFF597 0.67 -0.1
601,787 + GFF597 0.69 -1.6
601,845 - GFF597 0.73 -2.6
601,887 + GFF597 0.76 +0.4
601,887 + GFF597 0.76 +1.0
601,895 - GFF597 0.77 -0.2
601,895 - GFF597 0.77 +0.5
601,897 + GFF597 0.77 -0.1
601,900 - GFF597 0.77 +0.1
601,905 - GFF597 0.78 +0.1
601,994 - GFF597 0.84 -1.3
602,036 + GFF597 0.87 -0.4
602,041 + GFF597 0.88 +0.0
602,041 + GFF597 0.88 -2.0
602,041 + GFF597 0.88 +0.7
602,041 + GFF597 0.88 -1.3
602,041 + GFF597 0.88 -0.7
602,041 + GFF597 0.88 -0.4
602,041 + GFF597 0.88 -0.9
602,044 - GFF597 0.88 +0.1
602,044 - GFF597 0.88 +0.0
602,044 - GFF597 0.88 +0.1
602,049 - GFF597 0.88 -0.0
602,049 - GFF597 0.88 -1.0
602,049 - GFF597 0.88 +1.3
602,049 - GFF597 0.88 -0.4
602,049 - GFF597 0.88 -1.1
602,049 - GFF597 0.88 +0.2
602,049 - GFF597 0.88 +0.1
602,079 + -0.0
602,079 + -1.6
602,084 + -1.3
602,084 + +0.2
602,087 - +0.3
602,089 + -0.4
602,094 + +0.1
602,152 + -0.8
602,164 + +0.1
602,165 - -2.9
602,199 + +0.9
602,209 + -0.1
602,217 - -0.7
602,217 - +2.1
602,217 - -0.3
602,236 + +0.1
602,244 - -0.5
602,262 - +0.1
602,368 + GFF598 0.15 -0.8
602,373 + GFF598 0.16 +0.9
602,373 + GFF598 0.16 -0.1
602,381 + GFF598 0.17 -0.5
602,429 - GFF598 0.24 +0.7
602,510 + GFF598 0.35 -0.9
602,569 + GFF598 0.43 -0.0
602,589 + GFF598 0.46 -0.8
602,607 + GFF598 0.49 +0.4
602,607 + GFF598 0.49 +0.4
602,607 + GFF598 0.49 +0.3
602,615 - GFF598 0.50 -2.4
602,616 + GFF598 0.50 -0.4
602,629 + GFF598 0.52 +0.1
602,637 - GFF598 0.53 +0.9
602,659 - GFF598 0.56 -0.1
602,697 + GFF598 0.61 -0.3
602,749 - GFF598 0.69 -1.5
602,762 + GFF598 0.71 +1.3
602,781 + GFF598 0.73 +0.5
602,838 + GFF598 0.81 +1.5
602,846 - GFF598 0.82 -1.3
602,893 - GFF598 0.89 +0.4
602,905 + -1.0
602,913 - -1.4
602,980 - -0.0
603,002 + -1.3
603,002 + -0.6
603,036 - +0.6
603,632 + GFF600 0.81 -0.9
603,632 + GFF600 0.81 +0.6
603,632 + GFF600 0.81 -0.2
603,691 - -0.5
603,723 + -0.6
603,740 + GFF601 0.16 -0.0
603,740 + GFF601 0.16 +0.6
603,748 - GFF601 0.20 +0.4
603,748 - GFF601 0.20 -0.8
603,768 + GFF601 0.29 -0.5
603,777 - GFF601 0.33 -1.1
603,777 - GFF601 0.33 -0.0
603,787 + GFF601 0.38 +0.7
603,787 + GFF601 0.38 -0.3
603,787 + GFF601 0.38 +0.1
603,792 + GFF601 0.40 -0.2
603,795 - GFF601 0.42 +0.1
603,795 - GFF601 0.42 -0.1
603,795 - GFF601 0.42 -0.2
603,795 - GFF601 0.42 +0.6
603,856 + GFF601 0.70 -0.3
603,882 + GFF601 0.83 +0.5
603,914 + +1.7

Or see this region's nucleotide sequence