Strain Fitness in Sphingobium sp. HT1-2 around GFF595

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF594 and GFF595 are separated by 207 nucleotidesGFF595 and GFF596 are separated by 69 nucleotides GFF594 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 596,182 to 597,462 GFF594 GFF595 - hypothetical protein, at 597,670 to 597,912 GFF595 GFF596 - Ribonuclease E (EC 3.1.26.12), at 597,982 to 600,708 GFF596 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 596.690 kb on + strand, within GFF594at 596.692 kb on + strand, within GFF594at 596.700 kb on - strand, within GFF594at 596.700 kb on - strand, within GFF594at 596.700 kb on - strand, within GFF594at 596.700 kb on - strand, within GFF594at 596.703 kb on - strand, within GFF594at 596.706 kb on - strand, within GFF594at 596.717 kb on - strand, within GFF594at 596.729 kb on + strand, within GFF594at 596.734 kb on + strand, within GFF594at 596.734 kb on + strand, within GFF594at 596.734 kb on + strand, within GFF594at 596.742 kb on - strand, within GFF594at 596.742 kb on - strand, within GFF594at 596.745 kb on + strand, within GFF594at 596.754 kb on + strand, within GFF594at 596.759 kb on + strand, within GFF594at 596.759 kb on + strand, within GFF594at 596.759 kb on + strand, within GFF594at 596.759 kb on + strand, within GFF594at 596.759 kb on + strand, within GFF594at 596.761 kb on - strand, within GFF594at 596.762 kb on - strand, within GFF594at 596.767 kb on - strand, within GFF594at 596.767 kb on - strand, within GFF594at 596.767 kb on - strand, within GFF594at 596.767 kb on - strand, within GFF594at 596.777 kb on + strand, within GFF594at 596.801 kb on + strand, within GFF594at 596.809 kb on - strand, within GFF594at 596.822 kb on + strand, within GFF594at 596.822 kb on + strand, within GFF594at 596.830 kb on - strand, within GFF594at 596.830 kb on - strand, within GFF594at 596.830 kb on - strand, within GFF594at 596.867 kb on + strand, within GFF594at 596.885 kb on - strand, within GFF594at 596.922 kb on + strand, within GFF594at 596.922 kb on + strand, within GFF594at 596.922 kb on + strand, within GFF594at 596.922 kb on + strand, within GFF594at 596.930 kb on - strand, within GFF594at 596.930 kb on - strand, within GFF594at 596.930 kb on - strand, within GFF594at 596.930 kb on - strand, within GFF594at 596.930 kb on - strand, within GFF594at 596.932 kb on + strand, within GFF594at 597.013 kb on + strand, within GFF594at 597.021 kb on - strand, within GFF594at 597.022 kb on + strand, within GFF594at 597.038 kb on + strand, within GFF594at 597.038 kb on + strand, within GFF594at 597.046 kb on - strand, within GFF594at 597.046 kb on - strand, within GFF594at 597.063 kb on - strand, within GFF594at 597.077 kb on - strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.108 kb on - strand, within GFF594at 597.125 kb on + strand, within GFF594at 597.136 kb on + strand, within GFF594at 597.137 kb on - strand, within GFF594at 597.150 kb on + strand, within GFF594at 597.150 kb on + strand, within GFF594at 597.150 kb on + strand, within GFF594at 597.152 kb on + strand, within GFF594at 597.158 kb on - strand, within GFF594at 597.166 kb on + strand, within GFF594at 597.166 kb on - strand, within GFF594at 597.169 kb on - strand, within GFF594at 597.174 kb on - strand, within GFF594at 597.174 kb on - strand, within GFF594at 597.174 kb on - strand, within GFF594at 597.185 kb on + strand, within GFF594at 597.190 kb on + strand, within GFF594at 597.190 kb on + strand, within GFF594at 597.190 kb on + strand, within GFF594at 597.193 kb on - strand, within GFF594at 597.193 kb on - strand, within GFF594at 597.229 kb on - strand, within GFF594at 597.229 kb on - strand, within GFF594at 597.247 kb on - strand, within GFF594at 597.251 kb on - strand, within GFF594at 597.254 kb on + strand, within GFF594at 597.257 kb on - strand, within GFF594at 597.266 kb on + strand, within GFF594at 597.274 kb on - strand, within GFF594at 597.290 kb on + strand, within GFF594at 597.298 kb on - strand, within GFF594at 597.302 kb on - strand, within GFF594at 597.336 kb on - strandat 597.339 kb on - strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.394 kb on - strandat 597.394 kb on - strandat 597.407 kb on - strandat 597.414 kb on + strandat 597.418 kb on - strandat 597.436 kb on + strandat 597.444 kb on - strandat 597.444 kb on - strandat 597.446 kb on + strandat 597.474 kb on - strandat 597.515 kb on + strandat 597.515 kb on + strandat 597.515 kb on + strandat 597.532 kb on - strandat 597.532 kb on - strandat 597.539 kb on + strandat 597.593 kb on + strandat 597.601 kb on - strandat 597.612 kb on + strandat 597.612 kb on + strandat 597.612 kb on + strandat 597.620 kb on - strandat 597.634 kb on + strandat 597.634 kb on + strandat 597.741 kb on + strand, within GFF595at 597.756 kb on + strand, within GFF595at 597.756 kb on + strand, within GFF595at 597.779 kb on + strand, within GFF595at 597.779 kb on + strand, within GFF595at 597.788 kb on + strand, within GFF595at 597.800 kb on + strand, within GFF595at 597.800 kb on + strand, within GFF595at 597.810 kb on + strand, within GFF595at 597.810 kb on + strand, within GFF595at 597.825 kb on + strand, within GFF595at 597.827 kb on + strand, within GFF595at 597.827 kb on + strand, within GFF595at 597.827 kb on + strand, within GFF595at 597.827 kb on + strand, within GFF595at 597.844 kb on + strand, within GFF595at 597.912 kb on + strandat 597.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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596,690 + GFF594 0.40 +0.8
596,692 + GFF594 0.40 -0.2
596,700 - GFF594 0.40 -0.2
596,700 - GFF594 0.40 +0.9
596,700 - GFF594 0.40 -1.8
596,700 - GFF594 0.40 -0.3
596,703 - GFF594 0.41 -0.6
596,706 - GFF594 0.41 -0.6
596,717 - GFF594 0.42 +1.1
596,729 + GFF594 0.43 -0.5
596,734 + GFF594 0.43 -0.0
596,734 + GFF594 0.43 -1.6
596,734 + GFF594 0.43 -1.2
596,742 - GFF594 0.44 +0.3
596,742 - GFF594 0.44 +1.2
596,745 + GFF594 0.44 +0.2
596,754 + GFF594 0.45 +0.5
596,759 + GFF594 0.45 -1.1
596,759 + GFF594 0.45 -1.4
596,759 + GFF594 0.45 +0.0
596,759 + GFF594 0.45 +0.7
596,759 + GFF594 0.45 -1.3
596,761 - GFF594 0.45 -2.3
596,762 - GFF594 0.45 -0.8
596,767 - GFF594 0.46 +0.3
596,767 - GFF594 0.46 -1.8
596,767 - GFF594 0.46 -1.3
596,767 - GFF594 0.46 -1.0
596,777 + GFF594 0.46 +0.3
596,801 + GFF594 0.48 -0.5
596,809 - GFF594 0.49 -1.2
596,822 + GFF594 0.50 -0.0
596,822 + GFF594 0.50 -1.3
596,830 - GFF594 0.51 -0.8
596,830 - GFF594 0.51 +1.3
596,830 - GFF594 0.51 -0.1
596,867 + GFF594 0.53 +0.5
596,885 - GFF594 0.55 +0.6
596,922 + GFF594 0.58 -1.3
596,922 + GFF594 0.58 -0.8
596,922 + GFF594 0.58 -0.6
596,922 + GFF594 0.58 +0.2
596,930 - GFF594 0.58 +0.7
596,930 - GFF594 0.58 -0.0
596,930 - GFF594 0.58 +0.3
596,930 - GFF594 0.58 +0.1
596,930 - GFF594 0.58 +0.0
596,932 + GFF594 0.59 +0.3
597,013 + GFF594 0.65 -0.2
597,021 - GFF594 0.65 +0.8
597,022 + GFF594 0.66 -0.3
597,038 + GFF594 0.67 -1.1
597,038 + GFF594 0.67 +0.5
597,046 - GFF594 0.67 +0.7
597,046 - GFF594 0.67 -0.1
597,063 - GFF594 0.69 +0.3
597,077 - GFF594 0.70 -1.0
597,095 + GFF594 0.71 +0.8
597,095 + GFF594 0.71 +0.9
597,095 + GFF594 0.71 +0.2
597,108 - GFF594 0.72 +0.5
597,125 + GFF594 0.74 +0.2
597,136 + GFF594 0.74 +0.7
597,137 - GFF594 0.75 +0.4
597,150 + GFF594 0.76 -0.1
597,150 + GFF594 0.76 -1.2
597,150 + GFF594 0.76 +0.9
597,152 + GFF594 0.76 +0.1
597,158 - GFF594 0.76 +0.4
597,166 + GFF594 0.77 +0.2
597,166 - GFF594 0.77 +1.0
597,169 - GFF594 0.77 -0.2
597,174 - GFF594 0.77 -2.0
597,174 - GFF594 0.77 +0.6
597,174 - GFF594 0.77 -2.1
597,185 + GFF594 0.78 +0.5
597,190 + GFF594 0.79 -0.8
597,190 + GFF594 0.79 -1.8
597,190 + GFF594 0.79 -1.7
597,193 - GFF594 0.79 +0.4
597,193 - GFF594 0.79 +0.1
597,229 - GFF594 0.82 +0.7
597,229 - GFF594 0.82 +0.7
597,247 - GFF594 0.83 +0.3
597,251 - GFF594 0.83 +0.4
597,254 + GFF594 0.84 -0.8
597,257 - GFF594 0.84 -0.6
597,266 + GFF594 0.85 -0.6
597,274 - GFF594 0.85 +0.8
597,290 + GFF594 0.86 +0.1
597,298 - GFF594 0.87 +1.3
597,302 - GFF594 0.87 -1.4
597,336 - -1.4
597,339 - +0.7
597,386 + -0.4
597,386 + +0.7
597,386 + +0.5
597,386 + -0.5
597,386 + +0.6
597,386 + -0.2
597,386 + +0.1
597,386 + -1.1
597,386 + -0.3
597,394 - +0.1
597,394 - +0.5
597,407 - -0.3
597,414 + +0.7
597,418 - +0.7
597,436 + +0.1
597,444 - +0.5
597,444 - +0.9
597,446 + -1.5
597,474 - -1.1
597,515 + +1.1
597,515 + +0.2
597,515 + +0.3
597,532 - +0.3
597,532 - -0.5
597,539 + -1.5
597,593 + +0.7
597,601 - -0.1
597,612 + +0.9
597,612 + +0.3
597,612 + -0.4
597,620 - -1.7
597,634 + -0.5
597,634 + -0.5
597,741 + GFF595 0.29 -0.3
597,756 + GFF595 0.35 -0.2
597,756 + GFF595 0.35 -0.3
597,779 + GFF595 0.45 -0.3
597,779 + GFF595 0.45 +0.9
597,788 + GFF595 0.49 +0.1
597,800 + GFF595 0.53 -0.2
597,800 + GFF595 0.53 +1.4
597,810 + GFF595 0.58 +2.0
597,810 + GFF595 0.58 +0.7
597,825 + GFF595 0.64 +1.3
597,827 + GFF595 0.65 -0.7
597,827 + GFF595 0.65 +0.0
597,827 + GFF595 0.65 -0.5
597,827 + GFF595 0.65 -0.2
597,844 + GFF595 0.72 -1.1
597,912 + +0.7
597,923 + +1.1

Or see this region's nucleotide sequence