Strain Fitness in Sphingobium sp. HT1-2 around GFF571

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF569 and GFF570 are separated by 3 nucleotidesGFF570 and GFF571 are separated by 81 nucleotidesGFF571 and GFF572 are separated by 585 nucleotidesGFF572 and GFF573 are separated by 146 nucleotides GFF569 - hypothetical protein, at 567,432 to 567,986 GFF569 GFF570 - hypothetical protein, at 567,990 to 568,670 GFF570 GFF571 - hypothetical protein, at 568,752 to 569,807 GFF571 GFF572 - tRNA-Ser-CGA, at 570,393 to 570,482 GFF572 GFF573 - hypothetical protein, at 570,629 to 571,000 GFF573 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 567.783 kb on + strand, within GFF569at 567.783 kb on + strand, within GFF569at 567.802 kb on + strand, within GFF569at 567.810 kb on - strand, within GFF569at 567.821 kb on + strand, within GFF569at 567.855 kb on + strand, within GFF569at 567.858 kb on - strand, within GFF569at 567.863 kb on - strand, within GFF569at 567.892 kb on + strand, within GFF569at 567.900 kb on - strand, within GFF569at 567.959 kb on + strandat 567.988 kb on - strandat 568.014 kb on + strandat 568.039 kb on + strandat 568.039 kb on + strandat 568.040 kb on + strandat 568.106 kb on + strand, within GFF570at 568.132 kb on + strand, within GFF570at 568.183 kb on + strand, within GFF570at 568.183 kb on + strand, within GFF570at 568.193 kb on - strand, within GFF570at 568.193 kb on - strand, within GFF570at 568.234 kb on + strand, within GFF570at 568.234 kb on + strand, within GFF570at 568.239 kb on + strand, within GFF570at 568.241 kb on - strand, within GFF570at 568.242 kb on - strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.256 kb on + strand, within GFF570at 568.263 kb on - strand, within GFF570at 568.263 kb on - strand, within GFF570at 568.303 kb on + strand, within GFF570at 568.304 kb on - strand, within GFF570at 568.310 kb on - strand, within GFF570at 568.320 kb on - strand, within GFF570at 568.344 kb on - strand, within GFF570at 568.364 kb on + strand, within GFF570at 568.364 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on - strand, within GFF570at 568.429 kb on - strand, within GFF570at 568.429 kb on - strand, within GFF570at 568.444 kb on - strand, within GFF570at 568.465 kb on - strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.513 kb on + strand, within GFF570at 568.513 kb on + strand, within GFF570at 568.521 kb on - strand, within GFF570at 568.521 kb on - strand, within GFF570at 568.572 kb on - strand, within GFF570at 568.573 kb on + strand, within GFF570at 568.595 kb on + strand, within GFF570at 568.608 kb on + strandat 568.665 kb on - strandat 568.665 kb on - strandat 568.665 kb on - strandat 568.673 kb on - strandat 568.700 kb on - strandat 568.700 kb on - strandat 568.702 kb on - strandat 568.702 kb on - strandat 568.717 kb on + strandat 568.729 kb on + strandat 568.729 kb on + strandat 568.737 kb on - strandat 568.780 kb on + strandat 568.782 kb on + strandat 568.782 kb on + strandat 568.892 kb on - strand, within GFF571at 569.222 kb on + strand, within GFF571at 569.659 kb on + strand, within GFF571at 569.841 kb on - strandat 570.025 kb on + strandat 570.047 kb on - strandat 570.065 kb on - strandat 570.082 kb on - strandat 570.129 kb on - strandat 570.133 kb on + strandat 570.140 kb on + strandat 570.196 kb on - strandat 570.224 kb on - strandat 570.614 kb on + strandat 570.626 kb on - strandat 570.641 kb on + strandat 570.666 kb on + strandat 570.689 kb on + strand, within GFF573at 570.689 kb on - strand, within GFF573at 570.699 kb on + strand, within GFF573at 570.710 kb on - strand, within GFF573at 570.743 kb on + strand, within GFF573at 570.745 kb on + strand, within GFF573at 570.748 kb on - strand, within GFF573at 570.761 kb on + strand, within GFF573at 570.761 kb on + strand, within GFF573at 570.769 kb on - strand, within GFF573at 570.784 kb on - strand, within GFF573at 570.803 kb on - strand, within GFF573

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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567,783 + GFF569 0.63 +1.2
567,783 + GFF569 0.63 -0.4
567,802 + GFF569 0.67 -0.3
567,810 - GFF569 0.68 -0.2
567,821 + GFF569 0.70 -0.5
567,855 + GFF569 0.76 +0.9
567,858 - GFF569 0.77 +0.5
567,863 - GFF569 0.78 -0.3
567,892 + GFF569 0.83 +0.0
567,900 - GFF569 0.84 -2.6
567,959 + -0.1
567,988 - +0.7
568,014 + -1.9
568,039 + -1.4
568,039 + -0.2
568,040 + -0.8
568,106 + GFF570 0.17 +0.6
568,132 + GFF570 0.21 +0.9
568,183 + GFF570 0.28 -0.1
568,183 + GFF570 0.28 +1.2
568,193 - GFF570 0.30 +0.2
568,193 - GFF570 0.30 -0.7
568,234 + GFF570 0.36 -2.0
568,234 + GFF570 0.36 -1.3
568,239 + GFF570 0.37 +1.5
568,241 - GFF570 0.37 +0.5
568,242 - GFF570 0.37 -0.4
568,244 + GFF570 0.37 -0.4
568,244 + GFF570 0.37 +0.2
568,244 + GFF570 0.37 -0.3
568,244 + GFF570 0.37 -2.0
568,244 + GFF570 0.37 -0.9
568,244 + GFF570 0.37 -0.2
568,244 + GFF570 0.37 -1.7
568,244 - GFF570 0.37 +0.7
568,252 - GFF570 0.38 +0.3
568,252 - GFF570 0.38 +1.7
568,252 - GFF570 0.38 -2.1
568,252 - GFF570 0.38 -0.6
568,256 + GFF570 0.39 +1.6
568,263 - GFF570 0.40 +0.3
568,263 - GFF570 0.40 -0.7
568,303 + GFF570 0.46 -0.6
568,304 - GFF570 0.46 +2.5
568,310 - GFF570 0.47 +0.2
568,320 - GFF570 0.48 -1.0
568,344 - GFF570 0.52 +0.2
568,364 + GFF570 0.55 +0.6
568,364 + GFF570 0.55 -0.0
568,421 + GFF570 0.63 +0.2
568,421 + GFF570 0.63 -0.5
568,421 + GFF570 0.63 -0.3
568,421 + GFF570 0.63 +0.9
568,421 - GFF570 0.63 -0.6
568,429 - GFF570 0.64 -0.5
568,429 - GFF570 0.64 +1.8
568,444 - GFF570 0.67 -1.2
568,465 - GFF570 0.70 -1.1
568,478 + GFF570 0.72 +0.2
568,478 + GFF570 0.72 +0.8
568,478 + GFF570 0.72 +0.3
568,513 + GFF570 0.77 +0.5
568,513 + GFF570 0.77 -1.8
568,521 - GFF570 0.78 -0.2
568,521 - GFF570 0.78 +1.9
568,572 - GFF570 0.85 +0.3
568,573 + GFF570 0.86 -1.4
568,595 + GFF570 0.89 -0.7
568,608 + -0.8
568,665 - -0.5
568,665 - +1.2
568,665 - +1.4
568,673 - -0.6
568,700 - +0.2
568,700 - +0.6
568,702 - -0.3
568,702 - -0.2
568,717 + +0.3
568,729 + +0.3
568,729 + -0.3
568,737 - +0.5
568,780 + +0.9
568,782 + +0.1
568,782 + -0.2
568,892 - GFF571 0.13 +0.1
569,222 + GFF571 0.45 +1.5
569,659 + GFF571 0.86 -1.4
569,841 - -0.7
570,025 + +1.1
570,047 - +1.9
570,065 - -0.4
570,082 - +0.0
570,129 - +1.7
570,133 + -0.5
570,140 + -1.9
570,196 - -0.2
570,224 - +0.4
570,614 + -0.9
570,626 - -2.3
570,641 + -0.2
570,666 + +0.7
570,689 + GFF573 0.16 +0.2
570,689 - GFF573 0.16 +0.7
570,699 + GFF573 0.19 -0.9
570,710 - GFF573 0.22 -1.2
570,743 + GFF573 0.31 -0.1
570,745 + GFF573 0.31 -0.0
570,748 - GFF573 0.32 +0.3
570,761 + GFF573 0.35 +1.2
570,761 + GFF573 0.35 +1.2
570,769 - GFF573 0.38 -1.4
570,784 - GFF573 0.42 +0.5
570,803 - GFF573 0.47 -0.8

Or see this region's nucleotide sequence