Strain Fitness in Sphingobium sp. HT1-2 around GFF5402

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,378,787	-		GFF5401	0.81	-1.2
5,378,814	+		GFF5401	0.83	-1.7
5,378,822	-		GFF5401	0.84	+0.2
5,378,824	-		GFF5401	0.84	-0.1
5,378,840	+		GFF5401	0.85	+1.0
5,378,857	-		GFF5401	0.86	-0.1
5,378,868	+		GFF5401	0.87	+0.8
5,378,874	-		GFF5401	0.88	+0.9
5,378,912	+				+1.1
5,378,927	-				+0.1
5,378,928	+				-2.0
5,378,932	+				+0.8
5,378,955	-				+0.1
5,378,956	+				+0.1
5,378,961	+				+1.3
5,378,964	-				-0.9
5,378,969	-				-1.0
5,378,969	-				-0.6
5,378,982	+				+0.1
5,378,985	-				-0.7
5,378,995	+				+0.3
5,379,036	-				+0.8
5,379,049	-				-0.5
5,379,059	+				-0.6
5,379,075	+				+1.4
5,379,075	+				+0.4
5,379,109	-				+0.4
5,379,210	+				+1.0
5,379,215	+				+0.8
5,379,216	+				+1.4
5,379,216	+				+1.0
5,379,216	+				+1.7
5,379,235	+				-0.9
5,379,235	+				-0.2
5,379,235	+				-2.1
5,379,240	+				-0.5
5,379,240	+				-0.8
5,379,240	+				-0.1
5,379,240	+				-1.1
5,379,248	-				-0.3
5,379,248	-				-0.1
5,379,248	-				+0.1
5,379,256	-				-2.4
5,379,270	-				-0.7
5,379,270	-				-0.4
5,379,270	-				+0.2
5,379,270	-				-1.2
5,379,270	-				-0.2
5,379,275	-				+0.4
5,379,275	-				-0.4
5,379,275	-				+0.2
5,379,280	-				-2.1
5,379,280	-				-1.1
5,379,280	-				+0.9
5,379,426	+				-0.6
5,379,426	+				-0.6
5,379,434	-				-0.4
5,379,444	+				-0.7
5,379,449	-				-0.4
5,379,467	+				+0.7
5,379,467	+				+0.1
5,379,475	+				-0.5
5,379,485	+				+0.5
5,379,490	+				+0.6
5,379,493	-				-1.7
5,379,498	-				+0.2
5,379,510	+				-0.2
5,379,510	+				-0.2
5,379,510	+				-0.3
5,379,518	-				-0.6
5,379,518	-				+0.1
5,379,527	-				-1.7
5,379,534	-				+0.1
5,379,534	-				+0.2
5,379,553	-				-0.2
5,379,562	+				+0.2
5,379,570	-				-0.2
5,379,581	-				-0.2
5,379,593	+				-1.0
5,379,596	+				+0.1
5,379,596	+				-1.8
5,379,599	-				-1.6
5,379,601	+				-1.9
5,379,601	-				-0.9
5,379,601	-				-2.8
5,379,604	-				-0.4
5,379,604	-				-0.3
5,379,628	-				-1.8
5,379,630	+				+0.5
5,379,630	+				+0.4
5,379,638	-				+0.2
5,379,638	-				-0.1
5,379,660	+				+0.7
5,379,673	-				-0.1
5,379,678	+				-1.8
5,379,678	+				+0.3
5,379,686	-				-0.3
5,379,693	+				-0.3
5,379,695	+				-0.4
5,379,695	-				-0.6
5,379,707	-				-0.8
5,379,731	+				-0.5
5,379,731	+				-1.0
5,379,731	+				-0.0
5,379,731	+				-1.4
5,379,731	+				-0.2
5,379,731	+				-0.4
5,379,731	+				-0.1
5,379,731	+				+0.9
5,379,731	+				-0.2
5,379,731	+				+1.3
5,379,739	-				-1.4
5,379,739	-				-1.5
5,379,739	-				+0.4
5,379,739	-				-0.8
5,379,739	-				+0.4
5,379,739	-				-0.5
5,379,739	-				-2.7
5,379,739	-				-0.1
5,379,739	-				+1.5
5,379,739	-				-0.8
5,379,739	-				+0.7
5,379,739	-				+1.3
5,379,739	-				-0.3
5,379,739	-				-0.2
5,379,739	-				+1.0
5,379,740	-				-2.1
5,379,740	-				+0.6
5,379,753	+				-0.3
5,379,758	+				-2.1
5,379,758	+				+1.1
5,379,766	-				+0.7
5,379,773	+				-0.8
5,379,777	+				-1.6
5,379,778	+				-1.1
5,379,786	+				-0.5
5,379,786	+				-1.3
5,379,786	-				-1.7
5,379,792	+				-0.7
5,379,792	+				+0.5
5,379,824	+				+0.4
5,379,826	+				-0.4
5,379,842	+		GFF5402	0.11	+0.7
5,379,842	+		GFF5402	0.11	-0.4
5,379,842	+		GFF5402	0.11	-1.4
5,379,843	+		GFF5402	0.11	-0.5
5,379,847	+		GFF5402	0.12	+0.7
5,379,848	+		GFF5402	0.12	-1.0
5,379,850	-		GFF5402	0.12	-0.2
5,379,850	-		GFF5402	0.12	-1.7
5,379,855	-		GFF5402	0.13	-1.0
5,379,855	-		GFF5402	0.13	-1.7
5,379,861	-		GFF5402	0.14	-1.2
5,379,862	-		GFF5402	0.14	-1.7
5,379,882	-		GFF5402	0.18	-2.1
5,379,901	+		GFF5402	0.21	+1.3
5,379,901	+		GFF5402	0.21	-0.0
5,379,901	+		GFF5402	0.21	-0.3
5,379,901	+		GFF5402	0.21	-1.0
5,379,901	+		GFF5402	0.21	+0.1
5,379,909	-		GFF5402	0.23	-2.5
5,379,909	-		GFF5402	0.23	+0.9
5,379,909	-		GFF5402	0.23	+0.5
5,379,909	-		GFF5402	0.23	+0.1
5,379,909	-		GFF5402	0.23	-0.1
5,379,926	-		GFF5402	0.26	-0.9
5,379,953	+		GFF5402	0.31	-0.2
5,379,971	+		GFF5402	0.34	-2.2
5,379,976	+		GFF5402	0.35	-0.1
5,379,976	+		GFF5402	0.35	-1.6
5,379,983	-		GFF5402	0.36	-0.3
5,379,983	-		GFF5402	0.36	-1.0
5,379,986	+		GFF5402	0.37	-0.7
5,379,990	+		GFF5402	0.37	+0.8
5,379,994	-		GFF5402	0.38	-0.6
5,380,000	-		GFF5402	0.39	-1.0
5,380,001	+		GFF5402	0.39	-0.7
5,380,013	+		GFF5402	0.41	-1.5
5,380,013	+		GFF5402	0.41	-0.3
5,380,013	+		GFF5402	0.41	-1.6
5,380,013	+		GFF5402	0.41	-0.1
5,380,013	+		GFF5402	0.41	+0.3
5,380,013	+		GFF5402	0.41	-0.5
5,380,018	+		GFF5402	0.42	-1.3
5,380,018	+		GFF5402	0.42	-1.1
5,380,021	-		GFF5402	0.43	+0.2
5,380,021	-		GFF5402	0.43	-0.1
5,380,021	-		GFF5402	0.43	-1.4
5,380,026	-		GFF5402	0.44	+0.1
5,380,026	-		GFF5402	0.44	+0.7
5,380,051	-		GFF5402	0.48	-2.3
5,380,062	-		GFF5402	0.50	+1.1
5,380,067	-		GFF5402	0.51	+0.1
5,380,078	+		GFF5402	0.53	+0.3
5,380,080	+		GFF5402	0.53	+0.5
5,380,086	-		GFF5402	0.54	-1.5
5,380,088	-		GFF5402	0.55	-2.0
5,380,088	-		GFF5402	0.55	+0.3
5,380,096	-		GFF5402	0.56	-2.5
5,380,101	+		GFF5402	0.57	-0.0
5,380,142	-		GFF5402	0.64	+0.3
5,380,142	-		GFF5402	0.64	-0.5
5,380,149	+		GFF5402	0.66	-0.1
5,380,157	-		GFF5402	0.67	-1.9
5,380,157	-		GFF5402	0.67	+0.3
5,380,197	-		GFF5402	0.74	-0.7
5,380,205	+		GFF5402	0.76	-1.0
5,380,230	-		GFF5402	0.80	-0.1
5,380,230	-		GFF5402	0.80	+0.5
5,380,232	+		GFF5402	0.80	-1.1
5,380,232	+		GFF5402	0.80	-0.9
5,380,232	+		GFF5402	0.80	-0.0
5,380,232	+		GFF5402	0.80	-0.6
5,380,232	+		GFF5402	0.80	+0.5
5,380,232	+		GFF5402	0.80	+0.7
5,380,232	+		GFF5402	0.80	+0.3
5,380,232	+		GFF5402	0.80	-1.9
5,380,232	+		GFF5402	0.80	+0.2
5,380,232	+		GFF5402	0.80	-0.0
5,380,232	+		GFF5402	0.80	-1.5
5,380,232	+		GFF5402	0.80	-0.7
5,380,232	+		GFF5402	0.80	-0.1
5,380,232	+		GFF5402	0.80	-0.5
5,380,232	+		GFF5402	0.80	-1.7
5,380,232	+		GFF5402	0.80	-0.6
5,380,232	+		GFF5402	0.80	-2.3
5,380,232	+		GFF5402	0.80	+0.3
5,380,232	+		GFF5402	0.80	-0.0
5,380,232	+		GFF5402	0.80	+0.3
5,380,232	+		GFF5402	0.80	-0.4
5,380,232	+		GFF5402	0.80	+0.3
5,380,232	+		GFF5402	0.80	-0.7
5,380,232	+		GFF5402	0.80	-2.5
5,380,232	+		GFF5402	0.80	-0.0
5,380,232	+		GFF5402	0.80	+0.2
5,380,232	+		GFF5402	0.80	-0.8
5,380,232	+		GFF5402	0.80	+0.1
5,380,232	+		GFF5402	0.80	-2.0
5,380,232	+		GFF5402	0.80	+0.1
5,380,232	+		GFF5402	0.80	-2.5
5,380,232	+		GFF5402	0.80	+0.5
5,380,232	+		GFF5402	0.80	-0.0
5,380,232	+		GFF5402	0.80	+0.4
5,380,232	+		GFF5402	0.80	-0.8
5,380,232	+		GFF5402	0.80	-0.9
5,380,232	+		GFF5402	0.80	+0.1
5,380,235	+		GFF5402	0.81	-0.1
5,380,235	+		GFF5402	0.81	-0.3
5,380,235	+		GFF5402	0.81	+0.3
5,380,240	-		GFF5402	0.82	+0.1
5,380,240	-		GFF5402	0.82	-0.7
5,380,240	-		GFF5402	0.82	-0.1
5,380,240	-		GFF5402	0.82	-1.6
5,380,240	-		GFF5402	0.82	-0.6
5,380,240	-		GFF5402	0.82	-0.8
5,380,240	-		GFF5402	0.82	-2.8
5,380,240	-		GFF5402	0.82	-0.5
5,380,240	-		GFF5402	0.82	-0.3
5,380,240	-		GFF5402	0.82	-0.9
5,380,240	-		GFF5402	0.82	-2.3
5,380,240	-		GFF5402	0.82	-0.9
5,380,240	-		GFF5402	0.82	+0.7
5,380,240	-		GFF5402	0.82	-0.9
5,380,240	-		GFF5402	0.82	-1.5
5,380,240	-		GFF5402	0.82	-1.2
5,380,240	-		GFF5402	0.82	+0.9
5,380,240	-		GFF5402	0.82	-0.0
5,380,240	-		GFF5402	0.82	-0.8
5,380,240	-		GFF5402	0.82	+0.5
5,380,240	-		GFF5402	0.82	-1.6
5,380,240	-		GFF5402	0.82	+0.1
5,380,240	-		GFF5402	0.82	-0.2
5,380,240	-		GFF5402	0.82	+0.2
5,380,240	-		GFF5402	0.82	-1.5
5,380,240	-		GFF5402	0.82	-0.0
5,380,240	-		GFF5402	0.82	-0.1
5,380,240	-		GFF5402	0.82	-1.7
5,380,240	-		GFF5402	0.82	+0.1
5,380,240	-		GFF5402	0.82	-1.1
5,380,240	-		GFF5402	0.82	+0.1
5,380,240	-		GFF5402	0.82	+0.3
5,380,240	-		GFF5402	0.82	-0.5
5,380,242	+		GFF5402	0.82	+1.0
5,380,242	+		GFF5402	0.82	-0.1
5,380,509	+				-0.0
5,380,514	+				-0.3
5,380,547	-				-0.5
5,380,591	-				-1.5
5,380,593	+				-1.9
5,380,617	-				+0.9
5,380,623	-				+0.1
5,380,627	-				-0.2
5,380,633	+				-1.7
5,380,641	-				-0.6
5,380,647	-				+0.3
5,380,652	+				-0.3
5,380,652	+				-1.4
5,380,671	+				-1.8
5,380,688	+				-0.9
5,380,688	+				-2.1
5,380,691	-				+0.7
5,380,691	-				-0.7
5,380,693	+				-0.1
5,380,693	+				-2.0
5,380,693	+				-1.0
5,380,693	+				-1.3
5,380,696	-				-1.3
5,380,696	-				+0.4
5,380,696	-				-2.4
5,380,701	-				-0.6
5,380,701	-				-0.2
5,380,710	-				-1.1
5,380,719	-				-0.6
5,380,731	+				-0.5
5,380,739	+				+0.9
5,380,739	+				-1.6
5,380,747	-				+0.5
5,380,747	-				-0.2
5,380,755	-				-1.8
5,380,770	-				+2.0
5,380,770	-				-1.2
5,380,771	-				-0.0
5,380,781	-				-1.0
5,380,813	-				-1.4
5,380,818	+				-1.7
5,380,823	-				-0.0
5,380,826	-				+0.2
5,380,826	-				-0.2
5,380,831	-				+0.2
5,380,833	-				+0.8
5,380,855	-				+0.1
5,380,857	+				+0.0
5,380,857	+				-2.2
5,380,862	+				-2.0
5,380,862	+				+0.4
5,380,862	+				-0.4
5,380,862	+				-2.9
5,380,862	+				-0.8
5,380,862	+				-0.4
5,380,866	-				-1.7
5,380,867	+				-0.1
5,380,870	-				-1.5
5,380,870	-				-0.5
5,380,870	-				-1.0
5,380,870	-				-0.2
5,380,870	-				-1.0
5,380,870	-				+0.6
5,380,870	-				-2.0
5,380,887	-				-1.6
5,380,897	-				+0.4
5,380,928	+				+0.5
5,380,933	+				-2.8
5,380,933	+				-1.8
5,381,122	+		GFF5404	0.85	-1.5
5,381,122	+		GFF5404	0.85	+0.5
5,381,122	+		GFF5404	0.85	+0.9
5,381,122	+		GFF5404	0.85	-1.2
5,381,130	-		GFF5404	0.88	-1.5
5,381,159	+				-0.1
5,381,185	+				-1.2
5,381,185	+				+0.1
5,381,185	+				-1.8
5,381,185	+				-1.6
5,381,185	+				-0.2
5,381,193	-				-0.8
5,381,195	-				-0.6
5,381,197	+				-0.9
5,381,197	+				+1.1
5,381,202	+				+0.3
5,381,202	+				-1.3
5,381,202	+				-1.0
5,381,202	+				+1.2
5,381,202	+				+0.1
5,381,202	+				-1.6
5,381,202	+				+1.2
5,381,210	-				+0.0
5,381,210	-				-0.3
5,381,210	-				-1.8
5,381,210	-				-1.6
5,381,210	-				-0.5
5,381,211	-				-1.9
5,381,212	+		GFF5405	0.10	-1.8
5,381,220	-		GFF5405	0.11	-1.0
5,381,224	+		GFF5405	0.12	-0.0
5,381,224	+		GFF5405	0.12	-1.9
5,381,232	-		GFF5405	0.13	+0.3
5,381,232	-		GFF5405	0.13	-0.2
5,381,232	-		GFF5405	0.13	-1.5
5,381,233	+		GFF5405	0.14	+1.0
5,381,252	+		GFF5405	0.17	-0.6
5,381,292	+		GFF5405	0.24	-0.4
5,381,292	+		GFF5405	0.24	-0.4
5,381,300	-		GFF5405	0.25	-0.4
5,381,300	-		GFF5405	0.25	+0.2
5,381,300	-		GFF5405	0.25	-0.2
5,381,300	-		GFF5405	0.25	+1.6
5,381,300	-		GFF5405	0.25	-0.1
5,381,300	-		GFF5405	0.25	-1.8
5,381,300	-		GFF5405	0.25	-2.3
5,381,300	-		GFF5405	0.25	-0.2
5,381,312	+		GFF5405	0.27	-1.7
5,381,315	-		GFF5405	0.28	-0.1
5,381,322	+		GFF5405	0.29	-2.4