Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5392 and GFF5393 are separated by 36 nucleotides GFF5393 and GFF5394 are separated by 62 nucleotides GFF5394 and GFF5395 are separated by 57 nucleotides
GFF5392 - Two-component nitrogen fixation transcriptional regulator FixJ, at 5,371,615 to 5,372,238
GFF5392
GFF5393 - Response regulator receiver protein, at 5,372,275 to 5,372,727
GFF5393
GFF5394 - Magnesium and cobalt transport protein CorA, at 5,372,790 to 5,372,909
GFF5394
GFF5395 - Magnesium and cobalt transport protein CorA, at 5,372,967 to 5,373,452
GFF5395
Position (kb) 5372
5373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5371.802 kb on + strand, within GFF5392 at 5371.802 kb on + strand, within GFF5392 at 5371.802 kb on + strand, within GFF5392 at 5371.802 kb on + strand, within GFF5392 at 5371.802 kb on + strand, within GFF5392 at 5371.802 kb on + strand, within GFF5392 at 5371.810 kb on + strand, within GFF5392 at 5371.810 kb on + strand, within GFF5392 at 5371.810 kb on + strand, within GFF5392 at 5371.810 kb on - strand, within GFF5392 at 5371.818 kb on - strand, within GFF5392 at 5371.818 kb on - strand, within GFF5392 at 5371.844 kb on - strand, within GFF5392 at 5371.860 kb on + strand, within GFF5392 at 5371.863 kb on - strand, within GFF5392 at 5371.893 kb on + strand, within GFF5392 at 5371.948 kb on - strand, within GFF5392 at 5371.950 kb on + strand, within GFF5392 at 5371.953 kb on - strand, within GFF5392 at 5371.986 kb on - strand, within GFF5392 at 5371.986 kb on - strand, within GFF5392 at 5371.988 kb on + strand, within GFF5392 at 5371.995 kb on - strand, within GFF5392 at 5371.996 kb on - strand, within GFF5392 at 5372.012 kb on + strand, within GFF5392 at 5372.013 kb on - strand, within GFF5392 at 5372.020 kb on - strand, within GFF5392 at 5372.033 kb on + strand, within GFF5392 at 5372.045 kb on + strand, within GFF5392 at 5372.045 kb on + strand, within GFF5392 at 5372.046 kb on - strand, within GFF5392 at 5372.053 kb on - strand, within GFF5392 at 5372.053 kb on - strand, within GFF5392 at 5372.055 kb on + strand, within GFF5392 at 5372.062 kb on + strand, within GFF5392 at 5372.065 kb on - strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.105 kb on + strand, within GFF5392 at 5372.110 kb on + strand, within GFF5392 at 5372.110 kb on + strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.113 kb on - strand, within GFF5392 at 5372.115 kb on + strand, within GFF5392 at 5372.118 kb on - strand, within GFF5392 at 5372.118 kb on - strand, within GFF5392 at 5372.118 kb on - strand, within GFF5392 at 5372.132 kb on + strand, within GFF5392 at 5372.134 kb on + strand, within GFF5392 at 5372.134 kb on + strand, within GFF5392 at 5372.141 kb on - strand, within GFF5392 at 5372.165 kb on + strand, within GFF5392 at 5372.173 kb on - strand, within GFF5392 at 5372.173 kb on - strand, within GFF5392 at 5372.215 kb on + strand at 5372.223 kb on - strand at 5372.223 kb on - strand at 5372.237 kb on - strand at 5372.245 kb on + strand at 5372.303 kb on + strand at 5372.304 kb on - strand at 5372.304 kb on - strand at 5372.304 kb on - strand at 5372.311 kb on - strand at 5372.331 kb on + strand, within GFF5393 at 5372.341 kb on - strand, within GFF5393 at 5372.341 kb on - strand, within GFF5393 at 5372.346 kb on - strand, within GFF5393 at 5372.399 kb on + strand, within GFF5393 at 5372.402 kb on - strand, within GFF5393 at 5372.407 kb on - strand, within GFF5393 at 5372.407 kb on - strand, within GFF5393 at 5372.407 kb on - strand, within GFF5393 at 5372.407 kb on - strand, within GFF5393 at 5372.407 kb on - strand, within GFF5393 at 5372.417 kb on - strand, within GFF5393 at 5372.426 kb on + strand, within GFF5393 at 5372.426 kb on + strand, within GFF5393 at 5372.426 kb on + strand, within GFF5393 at 5372.426 kb on + strand, within GFF5393 at 5372.434 kb on - strand, within GFF5393 at 5372.434 kb on - strand, within GFF5393 at 5372.434 kb on - strand, within GFF5393 at 5372.434 kb on - strand, within GFF5393 at 5372.461 kb on - strand, within GFF5393 at 5372.469 kb on - strand, within GFF5393 at 5372.485 kb on + strand, within GFF5393 at 5372.503 kb on - strand, within GFF5393 at 5372.525 kb on - strand, within GFF5393 at 5372.544 kb on + strand, within GFF5393 at 5372.544 kb on + strand, within GFF5393 at 5372.549 kb on + strand, within GFF5393 at 5372.581 kb on + strand, within GFF5393 at 5372.589 kb on - strand, within GFF5393 at 5372.616 kb on - strand, within GFF5393 at 5372.616 kb on - strand, within GFF5393 at 5372.643 kb on - strand, within GFF5393 at 5372.658 kb on + strand, within GFF5393 at 5372.666 kb on - strand, within GFF5393 at 5372.666 kb on - strand, within GFF5393 at 5372.666 kb on - strand, within GFF5393 at 5372.666 kb on - strand, within GFF5393 at 5372.674 kb on + strand, within GFF5393 at 5372.674 kb on + strand, within GFF5393 at 5372.675 kb on - strand, within GFF5393 at 5372.682 kb on - strand at 5372.686 kb on + strand at 5372.694 kb on - strand at 5372.694 kb on - strand at 5372.700 kb on - strand at 5372.710 kb on - strand at 5372.721 kb on + strand at 5372.721 kb on + strand at 5372.721 kb on + strand at 5372.728 kb on + strand at 5372.729 kb on - strand at 5372.734 kb on - strand at 5372.741 kb on + strand at 5372.741 kb on + strand at 5372.749 kb on - strand at 5372.749 kb on - strand at 5372.751 kb on + strand at 5372.751 kb on + strand at 5372.760 kb on - strand at 5372.769 kb on + strand at 5372.779 kb on + strand at 5372.787 kb on - strand at 5372.789 kb on + strand at 5372.789 kb on + strand at 5372.789 kb on + strand at 5372.797 kb on - strand at 5372.797 kb on - strand at 5372.797 kb on - strand at 5372.801 kb on + strand at 5372.806 kb on + strand, within GFF5394 at 5372.806 kb on + strand, within GFF5394 at 5372.809 kb on - strand, within GFF5394 at 5372.820 kb on + strand, within GFF5394 at 5372.825 kb on + strand, within GFF5394 at 5372.825 kb on + strand, within GFF5394 at 5372.825 kb on + strand, within GFF5394 at 5372.825 kb on + strand, within GFF5394 at 5372.825 kb on + strand, within GFF5394 at 5372.825 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.833 kb on - strand, within GFF5394 at 5372.838 kb on - strand, within GFF5394 at 5372.838 kb on - strand, within GFF5394 at 5372.959 kb on + strand at 5372.974 kb on - strand at 5372.976 kb on + strand at 5372.991 kb on - strand at 5372.991 kb on - strand at 5373.059 kb on + strand, within GFF5395 at 5373.064 kb on + strand, within GFF5395 at 5373.064 kb on + strand, within GFF5395 at 5373.067 kb on - strand, within GFF5395 at 5373.069 kb on + strand, within GFF5395 at 5373.072 kb on - strand, within GFF5395 at 5373.105 kb on + strand, within GFF5395 at 5373.115 kb on + strand, within GFF5395 at 5373.115 kb on - strand, within GFF5395 at 5373.131 kb on + strand, within GFF5395 at 5373.131 kb on + strand, within GFF5395 at 5373.139 kb on - strand, within GFF5395 at 5373.139 kb on - strand, within GFF5395 at 5373.139 kb on - strand, within GFF5395 at 5373.147 kb on - strand, within GFF5395 at 5373.167 kb on + strand, within GFF5395 at 5373.186 kb on - strand, within GFF5395 at 5373.187 kb on + strand, within GFF5395 at 5373.206 kb on - strand, within GFF5395 at 5373.210 kb on - strand, within GFF5395 at 5373.232 kb on + strand, within GFF5395 at 5373.234 kb on + strand, within GFF5395 at 5373.242 kb on + strand, within GFF5395 at 5373.250 kb on + strand, within GFF5395 at 5373.250 kb on - strand, within GFF5395 at 5373.299 kb on + strand, within GFF5395 at 5373.323 kb on - strand, within GFF5395 at 5373.323 kb on - strand, within GFF5395 at 5373.323 kb on - strand, within GFF5395 at 5373.323 kb on - strand, within GFF5395 at 5373.328 kb on + strand, within GFF5395 at 5373.336 kb on - strand, within GFF5395 at 5373.427 kb on - strand at 5373.427 kb on - strand at 5373.427 kb on - strand at 5373.432 kb on - strand at 5373.445 kb on - strand at 5373.482 kb on + strand at 5373.482 kb on + strand at 5373.482 kb on + strand at 5373.482 kb on + strand at 5373.482 kb on + strand at 5373.484 kb on - strand at 5373.489 kb on + strand at 5373.490 kb on - strand at 5373.490 kb on - strand at 5373.490 kb on - strand at 5373.490 kb on - strand at 5373.490 kb on - strand at 5373.490 kb on - strand at 5373.506 kb on + strand at 5373.506 kb on + strand at 5373.506 kb on + strand at 5373.507 kb on - strand at 5373.509 kb on - strand at 5373.514 kb on - strand at 5373.514 kb on - strand at 5373.514 kb on - strand at 5373.514 kb on - strand at 5373.514 kb on - strand at 5373.516 kb on + strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.524 kb on - strand at 5373.556 kb on - strand at 5373.582 kb on - strand at 5373.585 kb on + strand at 5373.593 kb on - strand at 5373.603 kb on + strand at 5373.606 kb on + strand at 5373.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 5,371,802 + GFF5392 0.30 +0.7 5,371,802 + GFF5392 0.30 -0.4 5,371,802 + GFF5392 0.30 -1.2 5,371,802 + GFF5392 0.30 -0.2 5,371,802 + GFF5392 0.30 +0.7 5,371,802 + GFF5392 0.30 +0.3 5,371,810 + GFF5392 0.31 +0.4 5,371,810 + GFF5392 0.31 +0.7 5,371,810 + GFF5392 0.31 -0.8 5,371,810 - GFF5392 0.31 +1.3 5,371,818 - GFF5392 0.33 -1.6 5,371,818 - GFF5392 0.33 -1.8 5,371,844 - GFF5392 0.37 -1.2 5,371,860 + GFF5392 0.39 -0.1 5,371,863 - GFF5392 0.40 +0.3 5,371,893 + GFF5392 0.45 -0.2 5,371,948 - GFF5392 0.53 -1.2 5,371,950 + GFF5392 0.54 -2.2 5,371,953 - GFF5392 0.54 +0.2 5,371,986 - GFF5392 0.59 +0.7 5,371,986 - GFF5392 0.59 -0.5 5,371,988 + GFF5392 0.60 +0.6 5,371,995 - GFF5392 0.61 +0.1 5,371,996 - GFF5392 0.61 -0.5 5,372,012 + GFF5392 0.64 +0.5 5,372,013 - GFF5392 0.64 -0.4 5,372,020 - GFF5392 0.65 -0.5 5,372,033 + GFF5392 0.67 -0.5 5,372,045 + GFF5392 0.69 +0.1 5,372,045 + GFF5392 0.69 +0.3 5,372,046 - GFF5392 0.69 +0.3 5,372,053 - GFF5392 0.70 -0.8 5,372,053 - GFF5392 0.70 -1.0 5,372,055 + GFF5392 0.71 -2.3 5,372,062 + GFF5392 0.72 +0.1 5,372,065 - GFF5392 0.72 -0.3 5,372,105 + GFF5392 0.79 +0.4 5,372,105 + GFF5392 0.79 +0.2 5,372,105 + GFF5392 0.79 +0.3 5,372,105 + GFF5392 0.79 +0.6 5,372,105 + GFF5392 0.79 +0.8 5,372,105 + GFF5392 0.79 -0.5 5,372,110 + GFF5392 0.79 +0.1 5,372,110 + GFF5392 0.79 -0.0 5,372,113 - GFF5392 0.80 +0.6 5,372,113 - GFF5392 0.80 +0.5 5,372,113 - GFF5392 0.80 -0.1 5,372,113 - GFF5392 0.80 -0.0 5,372,113 - GFF5392 0.80 +0.1 5,372,113 - GFF5392 0.80 -1.1 5,372,113 - GFF5392 0.80 -0.3 5,372,113 - GFF5392 0.80 +1.1 5,372,115 + GFF5392 0.80 -2.1 5,372,118 - GFF5392 0.81 -0.5 5,372,118 - GFF5392 0.81 +0.6 5,372,118 - GFF5392 0.81 +0.5 5,372,132 + GFF5392 0.83 -0.4 5,372,134 + GFF5392 0.83 +0.1 5,372,134 + GFF5392 0.83 -1.1 5,372,141 - GFF5392 0.84 -2.3 5,372,165 + GFF5392 0.88 +0.3 5,372,173 - GFF5392 0.89 -0.6 5,372,173 - GFF5392 0.89 +0.4 5,372,215 + -0.8 5,372,223 - +0.5 5,372,223 - -0.0 5,372,237 - -0.7 5,372,245 + +0.6 5,372,303 + -2.6 5,372,304 - +0.9 5,372,304 - -1.3 5,372,304 - +0.7 5,372,311 - -0.8 5,372,331 + GFF5393 0.12 +0.1 5,372,341 - GFF5393 0.15 -1.7 5,372,341 - GFF5393 0.15 -0.4 5,372,346 - GFF5393 0.16 -1.2 5,372,399 + GFF5393 0.27 +0.2 5,372,402 - GFF5393 0.28 +1.2 5,372,407 - GFF5393 0.29 -0.8 5,372,407 - GFF5393 0.29 +0.1 5,372,407 - GFF5393 0.29 +0.2 5,372,407 - GFF5393 0.29 +0.2 5,372,407 - GFF5393 0.29 +0.1 5,372,417 - GFF5393 0.31 +0.3 5,372,426 + GFF5393 0.33 -1.7 5,372,426 + GFF5393 0.33 -0.4 5,372,426 + GFF5393 0.33 +0.1 5,372,426 + GFF5393 0.33 -1.7 5,372,434 - GFF5393 0.35 +0.8 5,372,434 - GFF5393 0.35 +0.2 5,372,434 - GFF5393 0.35 +0.7 5,372,434 - GFF5393 0.35 +0.5 5,372,461 - GFF5393 0.41 -0.2 5,372,469 - GFF5393 0.43 -1.7 5,372,485 + GFF5393 0.46 -1.3 5,372,503 - GFF5393 0.50 -0.3 5,372,525 - GFF5393 0.55 -0.5 5,372,544 + GFF5393 0.59 -0.3 5,372,544 + GFF5393 0.59 -0.4 5,372,549 + GFF5393 0.60 +0.3 5,372,581 + GFF5393 0.68 +0.2 5,372,589 - GFF5393 0.69 -1.7 5,372,616 - GFF5393 0.75 -1.7 5,372,616 - GFF5393 0.75 +0.1 5,372,643 - GFF5393 0.81 -0.6 5,372,658 + GFF5393 0.85 -1.3 5,372,666 - GFF5393 0.86 -0.1 5,372,666 - GFF5393 0.86 +0.6 5,372,666 - GFF5393 0.86 -1.6 5,372,666 - GFF5393 0.86 -0.1 5,372,674 + GFF5393 0.88 +0.5 5,372,674 + GFF5393 0.88 -0.8 5,372,675 - GFF5393 0.88 +0.1 5,372,682 - +0.1 5,372,686 + +0.7 5,372,694 - -2.3 5,372,694 - +0.5 5,372,700 - +1.0 5,372,710 - -1.5 5,372,721 + +0.5 5,372,721 + +0.7 5,372,721 + -0.1 5,372,728 + -1.1 5,372,729 - +0.1 5,372,734 - -0.0 5,372,741 + +0.9 5,372,741 + -2.2 5,372,749 - +0.2 5,372,749 - -2.0 5,372,751 + +0.7 5,372,751 + -1.0 5,372,760 - +0.3 5,372,769 + -0.8 5,372,779 + +0.8 5,372,787 - -1.0 5,372,789 + -0.0 5,372,789 + -0.5 5,372,789 + -0.6 5,372,797 - -0.8 5,372,797 - +0.7 5,372,797 - +0.3 5,372,801 + -0.0 5,372,806 + GFF5394 0.13 +1.2 5,372,806 + GFF5394 0.13 -0.7 5,372,809 - GFF5394 0.16 -0.4 5,372,820 + GFF5394 0.25 +0.4 5,372,825 + GFF5394 0.29 +0.3 5,372,825 + GFF5394 0.29 +0.1 5,372,825 + GFF5394 0.29 -0.7 5,372,825 + GFF5394 0.29 +0.8 5,372,825 + GFF5394 0.29 +0.7 5,372,825 - GFF5394 0.29 +0.7 5,372,833 - GFF5394 0.36 +0.9 5,372,833 - GFF5394 0.36 +0.1 5,372,833 - GFF5394 0.36 -1.9 5,372,833 - GFF5394 0.36 -1.3 5,372,833 - GFF5394 0.36 -0.6 5,372,833 - GFF5394 0.36 +0.5 5,372,833 - GFF5394 0.36 -1.2 5,372,833 - GFF5394 0.36 -1.5 5,372,838 - GFF5394 0.40 -0.8 5,372,838 - GFF5394 0.40 -0.6 5,372,959 + +0.9 5,372,974 - +1.3 5,372,976 + -0.5 5,372,991 - -0.7 5,372,991 - +0.5 5,373,059 + GFF5395 0.19 +0.0 5,373,064 + GFF5395 0.20 +1.5 5,373,064 + GFF5395 0.20 -0.2 5,373,067 - GFF5395 0.21 -0.3 5,373,069 + GFF5395 0.21 -0.6 5,373,072 - GFF5395 0.22 +0.6 5,373,105 + GFF5395 0.28 -0.3 5,373,115 + GFF5395 0.30 +0.4 5,373,115 - GFF5395 0.30 -1.8 5,373,131 + GFF5395 0.34 +0.3 5,373,131 + GFF5395 0.34 +0.7 5,373,139 - GFF5395 0.35 -0.2 5,373,139 - GFF5395 0.35 +0.1 5,373,139 - GFF5395 0.35 -0.1 5,373,147 - GFF5395 0.37 -1.6 5,373,167 + GFF5395 0.41 -0.7 5,373,186 - GFF5395 0.45 -1.8 5,373,187 + GFF5395 0.45 -1.4 5,373,206 - GFF5395 0.49 +1.3 5,373,210 - GFF5395 0.50 -0.9 5,373,232 + GFF5395 0.55 -0.7 5,373,234 + GFF5395 0.55 -0.2 5,373,242 + GFF5395 0.57 +1.1 5,373,250 + GFF5395 0.58 +0.1 5,373,250 - GFF5395 0.58 +1.3 5,373,299 + GFF5395 0.68 -0.2 5,373,323 - GFF5395 0.73 +0.2 5,373,323 - GFF5395 0.73 +1.0 5,373,323 - GFF5395 0.73 -0.2 5,373,323 - GFF5395 0.73 -0.7 5,373,328 + GFF5395 0.74 -1.3 5,373,336 - GFF5395 0.76 -0.5 5,373,427 - -0.0 5,373,427 - +0.1 5,373,427 - -0.6 5,373,432 - -1.0 5,373,445 - -1.8 5,373,482 + +1.1 5,373,482 + +0.5 5,373,482 + -3.1 5,373,482 + -0.1 5,373,482 + -0.7 5,373,484 - -0.2 5,373,489 + -0.7 5,373,490 - +1.3 5,373,490 - -0.8 5,373,490 - -1.0 5,373,490 - -0.8 5,373,490 - +0.9 5,373,490 - -0.7 5,373,506 + +1.5 5,373,506 + -0.0 5,373,506 + +0.3 5,373,507 - -1.7 5,373,509 - -0.2 5,373,514 - -1.0 5,373,514 - -0.1 5,373,514 - -0.6 5,373,514 - +0.4 5,373,514 - -0.5 5,373,516 + +0.2 5,373,524 - -2.0 5,373,524 - +1.3 5,373,524 - +0.1 5,373,524 - -2.4 5,373,524 - -1.3 5,373,524 - -1.8 5,373,524 - -0.6 5,373,524 - -0.0 5,373,524 - -0.1 5,373,524 - +0.1 5,373,556 - -0.0 5,373,582 - +1.4 5,373,585 + -0.0 5,373,593 - -0.5 5,373,603 + +0.8 5,373,606 + -0.0 5,373,611 - -0.9
Or see this region's nucleotide sequence