Strain Fitness in Sphingobium sp. HT1-2 around GFF5391

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,369,090	+		GFF5387	0.76	+0.6
5,369,092	-		GFF5387	0.76	+0.1
5,369,098	+		GFF5387	0.77	+0.1
5,369,099	-		GFF5387	0.77	+1.0
5,369,128	+		GFF5387	0.83	-0.5
5,369,130	-		GFF5387	0.83	-0.4
5,369,144	+		GFF5387	0.85	-0.5
5,369,146	+		GFF5387	0.86	-0.3
5,369,146	+		GFF5387	0.86	+0.6
5,369,146	+		GFF5387	0.86	-0.6
5,369,146	+		GFF5387	0.86	-0.0
5,369,146	+		GFF5387	0.86	+0.0
5,369,152	-		GFF5387	0.87	-1.8
5,369,152	-		GFF5387	0.87	-0.3
5,369,152	-		GFF5387	0.87	+0.8
5,369,154	-		GFF5387	0.87	+0.3
5,369,154	-		GFF5387	0.87	-0.5
5,369,154	-		GFF5387	0.87	+0.7
5,369,154	-		GFF5387	0.87	+0.6
5,369,154	-		GFF5387	0.87	-0.9
5,369,154	-		GFF5387	0.87	+0.5
5,369,154	-		GFF5387	0.87	-1.7
5,369,154	-		GFF5387	0.87	+0.7
5,369,163	+		GFF5387	0.89	-0.1
5,369,168	+		GFF5387	0.90	-0.7
5,369,168	+		GFF5387	0.90	+0.5
5,369,168	+		GFF5387	0.90	+0.1
5,369,168	+		GFF5387	0.90	+1.1
5,369,168	+		GFF5387	0.90	+1.3
5,369,168	+		GFF5387	0.90	+1.3
5,369,168	+		GFF5387	0.90	+0.4
5,369,168	+		GFF5387	0.90	-0.6
5,369,168	+		GFF5387	0.90	+0.5
5,369,168	+		GFF5387	0.90	-0.8
5,369,168	+		GFF5387	0.90	+0.8
5,369,176	-				+0.7
5,369,176	-				-0.3
5,369,176	-				-0.7
5,369,176	-				-1.8
5,369,178	+				+0.8
5,369,205	+				+0.1
5,369,213	-				+0.5
5,369,234	-				+0.2
5,369,259	+				+0.3
5,369,269	+				-0.3
5,369,270	+				-0.9
5,369,276	+				-1.8
5,369,277	-				+0.4
5,369,277	-				-0.1
5,369,277	-				-0.7
5,369,277	-				+0.2
5,369,277	-				-0.3
5,369,277	-				-0.2
5,369,277	-				+1.6
5,369,285	-				-0.6
5,369,286	-				+0.3
5,369,287	-				-0.5
5,369,307	+				-1.7
5,369,325	+		GFF5388	0.14	-1.6
5,369,325	+		GFF5388	0.14	+0.4
5,369,333	-		GFF5388	0.17	-0.6
5,369,333	-		GFF5388	0.17	-1.7
5,369,348	+		GFF5388	0.22	-0.8
5,369,348	+		GFF5388	0.22	-1.8
5,369,358	+		GFF5388	0.26	-0.0
5,369,366	-		GFF5388	0.28	-1.5
5,369,366	-		GFF5388	0.28	-0.6
5,369,389	+		GFF5388	0.36	-0.8
5,369,401	+		GFF5388	0.41	+1.1
5,369,404	-		GFF5388	0.42	+1.3
5,369,409	-		GFF5388	0.43	-0.9
5,369,428	-		GFF5388	0.50	+0.7
5,369,482	+		GFF5388	0.69	+1.1
5,369,489	-		GFF5388	0.71	-0.2
5,369,497	-		GFF5388	0.74	+1.3
5,369,519	+		GFF5388	0.82	+0.0
5,369,519	+		GFF5388	0.82	-0.6
5,369,527	-		GFF5388	0.84	-1.6
5,369,527	-		GFF5388	0.84	-0.7
5,369,527	-		GFF5388	0.84	+0.5
5,369,527	-		GFF5388	0.84	+0.9
5,369,549	-				+1.4
5,369,566	+				-1.0
5,369,566	+				+0.6
5,369,566	+				-0.7
5,369,566	+				-0.1
5,369,566	+				-1.6
5,369,566	+				+0.5
5,369,574	-				-1.8
5,369,574	-				-1.1
5,369,577	+				-0.3
5,369,577	+				-0.5
5,369,577	+				-0.5
5,369,585	-				-0.0
5,369,596	+				-1.0
5,369,596	+				-0.2
5,369,596	+				-0.3
5,369,596	+				-1.4
5,369,596	+				+0.7
5,369,598	+				-0.5
5,369,606	+				-1.6
5,369,606	+				-0.0
5,369,606	+				+0.7
5,369,613	+				+0.9
5,369,613	+				+0.1
5,369,613	+				-0.1
5,369,722	+				+0.7
5,369,724	+				+0.1
5,369,724	+				+0.5
5,369,724	+				+1.0
5,369,724	+				+0.3
5,369,724	+				+1.3
5,369,724	+				-1.6
5,369,724	+				+0.2
5,369,732	-				-0.2
5,369,732	-				+0.3
5,369,732	-				-0.8
5,369,732	-				+0.5
5,369,732	-				-0.3
5,369,768	-				-0.7
5,370,104	+				+0.7
5,370,135	-				+1.2
5,370,162	-				+0.1
5,370,172	+				-0.3
5,370,217	+				+0.7
5,370,249	+		GFF5391	0.10	-0.7
5,370,262	+		GFF5391	0.11	-0.2
5,370,262	+		GFF5391	0.11	+1.5
5,370,274	+		GFF5391	0.12	+0.3
5,370,274	+		GFF5391	0.12	-1.2
5,370,274	+		GFF5391	0.12	-0.5
5,370,274	+		GFF5391	0.12	-0.1
5,370,279	+		GFF5391	0.12	-0.5
5,370,282	-		GFF5391	0.12	-1.1
5,370,282	-		GFF5391	0.12	-1.4
5,370,282	-		GFF5391	0.12	-0.7
5,370,284	+		GFF5391	0.13	+0.5
5,370,284	+		GFF5391	0.13	-0.3
5,370,284	+		GFF5391	0.13	-0.7
5,370,284	+		GFF5391	0.13	-0.5
5,370,290	-		GFF5391	0.13	+0.4
5,370,292	-		GFF5391	0.13	-0.3
5,370,292	-		GFF5391	0.13	-1.6
5,370,302	-		GFF5391	0.14	+0.6
5,370,329	+		GFF5391	0.16	+0.4
5,370,329	+		GFF5391	0.16	-2.0
5,370,335	-		GFF5391	0.16	+0.5
5,370,340	+		GFF5391	0.16	-0.9
5,370,348	-		GFF5391	0.17	-0.3
5,370,348	-		GFF5391	0.17	-0.5
5,370,348	-		GFF5391	0.17	+0.2
5,370,352	+		GFF5391	0.17	+1.1
5,370,362	-		GFF5391	0.18	-2.9
5,370,370	+		GFF5391	0.18	-1.1
5,370,372	+		GFF5391	0.18	+0.7
5,370,394	-		GFF5391	0.20	+0.5
5,370,399	-		GFF5391	0.20	-1.9
5,370,399	-		GFF5391	0.20	+0.1
5,370,399	-		GFF5391	0.20	+0.1
5,370,428	+		GFF5391	0.22	-1.1
5,370,428	+		GFF5391	0.22	-2.6
5,370,436	-		GFF5391	0.23	-0.7
5,370,436	-		GFF5391	0.23	+0.6
5,370,436	-		GFF5391	0.23	-0.3
5,370,436	-		GFF5391	0.23	-1.0
5,370,436	-		GFF5391	0.23	-0.6
5,370,436	-		GFF5391	0.23	+0.7
5,370,444	+		GFF5391	0.23	+0.4
5,370,444	+		GFF5391	0.23	-0.0
5,370,444	+		GFF5391	0.23	-1.5
5,370,444	+		GFF5391	0.23	-0.2
5,370,444	+		GFF5391	0.23	+1.0
5,370,452	-		GFF5391	0.24	-0.1
5,370,464	-		GFF5391	0.24	+0.6
5,370,500	-		GFF5391	0.27	+1.0
5,370,534	+		GFF5391	0.29	-0.2
5,370,542	-		GFF5391	0.29	+0.1
5,370,555	-		GFF5391	0.30	+0.8
5,370,579	+		GFF5391	0.32	+0.3
5,370,593	+		GFF5391	0.33	-0.6
5,370,593	+		GFF5391	0.33	-0.5
5,370,596	-		GFF5391	0.33	+0.8
5,370,607	+		GFF5391	0.34	+0.3
5,370,614	-		GFF5391	0.34	+0.3
5,370,615	-		GFF5391	0.34	+0.4
5,370,617	-		GFF5391	0.34	+1.1
5,370,654	-		GFF5391	0.37	+0.7
5,370,655	+		GFF5391	0.37	+0.5
5,370,666	-		GFF5391	0.38	-0.2
5,370,714	+		GFF5391	0.41	-0.3
5,370,714	+		GFF5391	0.41	-0.7
5,370,770	-		GFF5391	0.44	-0.3
5,370,777	+		GFF5391	0.45	-0.3
5,370,785	-		GFF5391	0.45	-0.9
5,370,785	-		GFF5391	0.45	-0.8
5,370,815	-		GFF5391	0.47	-1.3
5,370,830	-		GFF5391	0.48	-0.7
5,370,831	+		GFF5391	0.48	-0.9
5,370,833	+		GFF5391	0.48	+0.6
5,370,839	-		GFF5391	0.49	+0.5
5,370,881	+		GFF5391	0.51	-1.1
5,370,888	-		GFF5391	0.52	-0.8
5,370,906	+		GFF5391	0.53	-0.3
5,370,906	+		GFF5391	0.53	+0.1
5,370,911	+		GFF5391	0.53	-0.9
5,370,914	-		GFF5391	0.54	-0.5
5,370,914	-		GFF5391	0.54	-0.1
5,370,919	+		GFF5391	0.54	+0.1
5,370,919	-		GFF5391	0.54	-0.9
5,370,927	-		GFF5391	0.54	-1.7
5,370,943	+		GFF5391	0.56	+0.4
5,370,946	-		GFF5391	0.56	+0.4
5,370,947	+		GFF5391	0.56	+0.1
5,370,947	+		GFF5391	0.56	+0.1
5,370,948	+		GFF5391	0.56	+1.0
5,370,998	-		GFF5391	0.59	-2.2
5,371,008	-		GFF5391	0.60	+0.0
5,371,037	+		GFF5391	0.62	-0.5
5,371,046	-		GFF5391	0.62	-0.3
5,371,062	-		GFF5391	0.63	+0.2
5,371,073	-		GFF5391	0.64	-1.3
5,371,101	+		GFF5391	0.66	-0.2
5,371,117	-		GFF5391	0.67	-0.2
5,371,154	-		GFF5391	0.69	-0.7
5,371,177	-		GFF5391	0.71	-0.0
5,371,183	-		GFF5391	0.71	-0.6
5,371,183	-		GFF5391	0.71	-1.6
5,371,186	+		GFF5391	0.71	-0.1
5,371,196	+		GFF5391	0.72	+0.7
5,371,205	+		GFF5391	0.73	+0.9
5,371,213	-		GFF5391	0.73	+1.0
5,371,235	-		GFF5391	0.75	-1.8
5,371,271	+		GFF5391	0.77	-0.0
5,371,277	-		GFF5391	0.77	+0.1
5,371,277	-		GFF5391	0.77	-2.4
5,371,279	+		GFF5391	0.77	-0.6
5,371,279	-		GFF5391	0.77	+0.3
5,371,289	-		GFF5391	0.78	+0.4
5,371,289	-		GFF5391	0.78	-0.6
5,371,289	-		GFF5391	0.78	+0.1
5,371,289	-		GFF5391	0.78	+1.2
5,371,294	-		GFF5391	0.78	-2.4
5,371,295	+		GFF5391	0.78	-0.5
5,371,296	+		GFF5391	0.79	-0.0
5,371,301	+		GFF5391	0.79	-1.0
5,371,304	-		GFF5391	0.79	+1.4
5,371,309	-		GFF5391	0.79	+0.8
5,371,354	+		GFF5391	0.82	+0.2
5,371,362	-		GFF5391	0.83	-1.5
5,371,381	+		GFF5391	0.84	-1.5
5,371,381	-		GFF5391	0.84	-2.2
5,371,389	-		GFF5391	0.85	+0.1
5,371,412	+		GFF5391	0.86	-1.9
5,371,456	-		GFF5391	0.89	-0.9
5,371,466	-		GFF5391	0.90	-1.9
5,371,475	+				-0.1
5,371,483	+				-0.8
5,371,483	+				-1.3
5,371,483	-				+0.1
5,371,488	+				-0.4
5,371,488	+				+0.5
5,371,496	-				-0.7
5,371,497	+				-0.8
5,371,527	+				-2.3
5,371,527	+				-0.5
5,371,543	+				-0.1
5,371,560	-				-0.2
5,371,575	-				-1.6
5,371,584	+				-2.1
5,371,584	+				-0.8
5,371,592	-				-0.1
5,371,592	-				-0.1
5,371,592	-				-0.9
5,371,592	-				-0.3
5,371,592	-				+0.6
5,371,615	-				-0.9
5,371,623	-				-1.6
5,371,649	-				-0.0
5,371,676	+				+0.6
5,371,676	+				-1.0
5,371,689	-		GFF5392	0.12	+0.2
5,371,696	+		GFF5392	0.13	-1.5
5,371,698	-		GFF5392	0.13	-0.5
5,371,704	-		GFF5392	0.14	-0.2
5,371,733	+		GFF5392	0.19	-0.3
5,371,756	+		GFF5392	0.23	+0.1
5,371,757	-		GFF5392	0.23	-0.4
5,371,764	-		GFF5392	0.24	+0.8
5,371,771	+		GFF5392	0.25	-1.5
5,371,772	+		GFF5392	0.25	+0.5
5,371,772	+		GFF5392	0.25	+0.5
5,371,780	-		GFF5392	0.26	+0.1
5,371,780	-		GFF5392	0.26	+0.1
5,371,782	-		GFF5392	0.27	-0.5
5,371,789	+		GFF5392	0.28	+1.3
5,371,802	+		GFF5392	0.30	+0.7
5,371,802	+		GFF5392	0.30	-0.4
5,371,802	+		GFF5392	0.30	-1.2
5,371,802	+		GFF5392	0.30	-0.2
5,371,802	+		GFF5392	0.30	+0.7
5,371,802	+		GFF5392	0.30	+0.3
5,371,810	+		GFF5392	0.31	+0.4
5,371,810	+		GFF5392	0.31	+0.7
5,371,810	+		GFF5392	0.31	-0.8
5,371,810	-		GFF5392	0.31	+1.3
5,371,818	-		GFF5392	0.33	-1.6
5,371,818	-		GFF5392	0.33	-1.8
5,371,844	-		GFF5392	0.37	-1.2
5,371,860	+		GFF5392	0.39	-0.1
5,371,863	-		GFF5392	0.40	+0.3
5,371,893	+		GFF5392	0.45	-0.2
5,371,948	-		GFF5392	0.53	-1.2
5,371,950	+		GFF5392	0.54	-2.2
5,371,953	-		GFF5392	0.54	+0.2
5,371,986	-		GFF5392	0.59	+0.7
5,371,986	-		GFF5392	0.59	-0.5
5,371,988	+		GFF5392	0.60	+0.6
5,371,995	-		GFF5392	0.61	+0.1
5,371,996	-		GFF5392	0.61	-0.5
5,372,012	+		GFF5392	0.64	+0.5
5,372,013	-		GFF5392	0.64	-0.4
5,372,020	-		GFF5392	0.65	-0.5
5,372,033	+		GFF5392	0.67	-0.5
5,372,045	+		GFF5392	0.69	+0.1
5,372,045	+		GFF5392	0.69	+0.3
5,372,046	-		GFF5392	0.69	+0.3
5,372,053	-		GFF5392	0.70	-0.8
5,372,053	-		GFF5392	0.70	-1.0
5,372,055	+		GFF5392	0.71	-2.3
5,372,062	+		GFF5392	0.72	+0.1
5,372,065	-		GFF5392	0.72	-0.3
5,372,105	+		GFF5392	0.79	+0.4
5,372,105	+		GFF5392	0.79	+0.2
5,372,105	+		GFF5392	0.79	+0.3
5,372,105	+		GFF5392	0.79	+0.6
5,372,105	+		GFF5392	0.79	+0.8
5,372,105	+		GFF5392	0.79	-0.5
5,372,110	+		GFF5392	0.79	+0.1
5,372,110	+		GFF5392	0.79	-0.0
5,372,113	-		GFF5392	0.80	+0.6
5,372,113	-		GFF5392	0.80	+0.5
5,372,113	-		GFF5392	0.80	-0.1
5,372,113	-		GFF5392	0.80	-0.0
5,372,113	-		GFF5392	0.80	+0.1
5,372,113	-		GFF5392	0.80	-1.1
5,372,113	-		GFF5392	0.80	-0.3
5,372,113	-		GFF5392	0.80	+1.1
5,372,115	+		GFF5392	0.80	-2.1
5,372,118	-		GFF5392	0.81	-0.5
5,372,118	-		GFF5392	0.81	+0.6
5,372,118	-		GFF5392	0.81	+0.5
5,372,132	+		GFF5392	0.83	-0.4
5,372,134	+		GFF5392	0.83	+0.1
5,372,134	+		GFF5392	0.83	-1.1
5,372,141	-		GFF5392	0.84	-2.3
5,372,165	+		GFF5392	0.88	+0.3
5,372,173	-		GFF5392	0.89	-0.6
5,372,173	-		GFF5392	0.89	+0.4
5,372,215	+				-0.8
5,372,223	-				+0.5
5,372,223	-				-0.0
5,372,237	-				-0.7
5,372,245	+				+0.6
5,372,303	+				-2.6
5,372,304	-				+0.9
5,372,304	-				-1.3
5,372,304	-				+0.7
5,372,311	-				-0.8
5,372,331	+		GFF5393	0.12	+0.1
5,372,341	-		GFF5393	0.15	-1.7
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5,372,589	-		GFF5393	0.69	-1.7
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