Strain Fitness in Sphingobium sp. HT1-2 around GFF5326

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,317,679	+				+0.7
5,317,679	+				-0.8
5,317,679	+				+0.4
5,317,687	-				+1.6
5,317,708	+				+0.1
5,317,711	+				+1.1
5,317,713	+				-0.7
5,317,713	+				+0.4
5,317,713	+				-0.5
5,317,713	+				+0.1
5,317,713	+				-0.4
5,317,714	+				-1.8
5,317,718	+				+0.2
5,317,721	-				-1.8
5,317,721	-				-0.3
5,317,721	-				+0.8
5,317,721	-				+1.3
5,317,721	-				-0.7
5,317,721	-				+0.2
5,317,751	+				-0.0
5,317,758	+				+0.4
5,317,766	-				-0.9
5,317,785	+				-1.2
5,317,795	+				-0.3
5,317,811	+				-0.1
5,317,811	+				+0.5
5,317,819	-				-0.8
5,317,832	+				+0.1
5,317,841	+				+0.1
5,317,846	+				-2.2
5,317,849	+				+0.3
5,317,851	+				+1.1
5,317,851	+				-0.8
5,317,851	+				+0.4
5,317,857	-				-0.3
5,317,857	-				-1.0
5,317,859	-				-1.3
5,317,859	-				-0.4
5,317,859	-				-1.5
5,317,859	-				-1.3
5,317,873	+		GFF5325	0.12	-2.1
5,317,883	+		GFF5325	0.14	+0.2
5,317,883	+		GFF5325	0.14	-2.7
5,317,884	+		GFF5325	0.14	-0.5
5,317,891	-		GFF5325	0.15	-0.8
5,317,893	-		GFF5325	0.15	+0.3
5,317,912	-		GFF5325	0.19	-1.3
5,317,915	+		GFF5325	0.19	-0.7
5,317,920	+		GFF5325	0.20	+0.9
5,317,928	+		GFF5325	0.21	-1.0
5,317,928	+		GFF5325	0.21	-0.3
5,317,928	+		GFF5325	0.21	-1.7
5,317,928	+		GFF5325	0.21	-1.3
5,317,928	+		GFF5325	0.21	-1.7
5,317,928	+		GFF5325	0.21	-0.6
5,317,928	+		GFF5325	0.21	+0.3
5,317,928	+		GFF5325	0.21	-0.8
5,317,929	+		GFF5325	0.21	-0.5
5,317,936	-		GFF5325	0.23	+0.7
5,317,936	-		GFF5325	0.23	+0.4
5,317,936	-		GFF5325	0.23	-1.8
5,317,937	-		GFF5325	0.23	-1.1
5,317,937	-		GFF5325	0.23	-0.3
5,317,937	-		GFF5325	0.23	+0.3
5,317,939	+		GFF5325	0.23	-0.1
5,317,939	+		GFF5325	0.23	-0.6
5,317,939	+		GFF5325	0.23	-0.7
5,317,939	+		GFF5325	0.23	-1.6
5,317,939	+		GFF5325	0.23	-0.9
5,317,947	-		GFF5325	0.24	+0.9
5,317,947	-		GFF5325	0.24	+0.7
5,317,947	-		GFF5325	0.24	+0.1
5,317,947	-		GFF5325	0.24	-1.2
5,317,947	-		GFF5325	0.24	+0.2
5,317,947	-		GFF5325	0.24	-0.0
5,317,947	-		GFF5325	0.24	+0.2
5,317,947	-		GFF5325	0.24	+0.7
5,317,947	-		GFF5325	0.24	-0.8
5,317,957	+		GFF5325	0.26	-0.9
5,317,972	-		GFF5325	0.29	+0.1
5,317,972	-		GFF5325	0.29	+1.1
5,317,978	-		GFF5325	0.30	-1.9
5,317,983	-		GFF5325	0.30	+0.5
5,317,992	-		GFF5325	0.32	-1.4
5,317,997	-		GFF5325	0.33	-0.0
5,318,005	+		GFF5325	0.34	-0.8
5,318,005	+		GFF5325	0.34	+0.0
5,318,013	-		GFF5325	0.35	+0.3
5,318,042	+		GFF5325	0.40	+0.5
5,318,075	+		GFF5325	0.46	-0.7
5,318,086	+		GFF5325	0.48	-2.3
5,318,102	+		GFF5325	0.50	-0.4
5,318,110	+		GFF5325	0.52	+0.3
5,318,110	-		GFF5325	0.52	-0.5
5,318,115	-		GFF5325	0.53	-0.3
5,318,120	-		GFF5325	0.53	+0.9
5,318,125	+		GFF5325	0.54	-1.6
5,318,126	+		GFF5325	0.54	+0.8
5,318,126	+		GFF5325	0.54	-0.2
5,318,133	+		GFF5325	0.56	-0.8
5,318,133	+		GFF5325	0.56	-0.4
5,318,141	-		GFF5325	0.57	-1.0
5,318,141	-		GFF5325	0.57	-0.8
5,318,148	-		GFF5325	0.58	+0.4
5,318,166	-		GFF5325	0.61	-1.2
5,318,173	+		GFF5325	0.62	-1.0
5,318,176	-		GFF5325	0.63	+0.1
5,318,184	+		GFF5325	0.64	-0.8
5,318,184	+		GFF5325	0.64	-2.0
5,318,184	+		GFF5325	0.64	-0.6
5,318,192	-		GFF5325	0.65	-0.8
5,318,192	-		GFF5325	0.65	-1.0
5,318,192	-		GFF5325	0.65	-1.0
5,318,192	-		GFF5325	0.65	-0.4
5,318,192	-		GFF5325	0.65	+2.0
5,318,192	-		GFF5325	0.65	+1.1
5,318,192	-		GFF5325	0.65	+0.8
5,318,192	-		GFF5325	0.65	-0.0
5,318,192	-		GFF5325	0.65	+0.1
5,318,192	-		GFF5325	0.65	-0.1
5,318,192	-		GFF5325	0.65	-1.0
5,318,234	-		GFF5325	0.72	+0.8
5,318,234	-		GFF5325	0.72	-1.9
5,318,234	-		GFF5325	0.72	-0.5
5,318,234	-		GFF5325	0.72	-0.1
5,318,245	+		GFF5325	0.74	-2.1
5,318,245	-		GFF5325	0.74	+0.8
5,318,253	-		GFF5325	0.76	-1.3
5,318,253	-		GFF5325	0.76	-0.1
5,318,253	-		GFF5325	0.76	-1.9
5,318,284	+		GFF5325	0.81	-1.9
5,318,302	-		GFF5325	0.84	-1.1
5,318,325	+		GFF5325	0.88	-0.7
5,318,325	+		GFF5325	0.88	+0.0
5,318,325	+		GFF5325	0.88	-2.3
5,318,325	+		GFF5325	0.88	+0.1
5,318,325	+		GFF5325	0.88	-0.5
5,318,325	+		GFF5325	0.88	-0.9
5,318,325	+		GFF5325	0.88	-1.8
5,318,327	+		GFF5325	0.88	-0.1
5,318,333	-		GFF5325	0.89	+0.7
5,318,333	-		GFF5325	0.89	-1.0
5,318,333	-		GFF5325	0.89	-1.7
5,318,333	-		GFF5325	0.89	+0.8
5,318,333	-		GFF5325	0.89	-0.6
5,318,333	-		GFF5325	0.89	-0.3
5,318,333	-		GFF5325	0.89	-0.2
5,318,333	-		GFF5325	0.89	-0.4
5,318,333	-		GFF5325	0.89	-2.0
5,318,333	-		GFF5325	0.89	-0.2
5,318,339	+		GFF5325	0.90	-0.6
5,318,339	+		GFF5325	0.90	-1.4
5,318,339	+		GFF5325	0.90	+0.6
5,318,356	-				-0.3
5,318,356	-				-2.2
5,318,356	-				+0.1
5,318,357	-				+0.2
5,318,359	+				+0.8
5,318,359	+				-0.2
5,318,363	+				+0.7
5,318,369	+				-1.6
5,318,369	+				-0.1
5,318,374	+				+0.2
5,318,377	-				-1.6
5,318,384	+				+0.7
5,318,384	+				-1.2
5,318,384	+				-0.6
5,318,384	+				-0.9
5,318,384	+				-2.3
5,318,384	-				-0.6
5,318,392	-				-0.6
5,318,392	-				-0.4
5,318,392	-				-0.3
5,318,392	-				-0.2
5,318,392	-				-0.4
5,318,395	+				+0.1
5,318,395	+				-0.9
5,318,400	+				-2.1
5,318,412	+				-0.5
5,318,412	+				+0.3
5,318,412	+				+0.2
5,318,417	+				-2.8
5,318,422	+				+1.8
5,318,422	+				+0.3
5,318,422	+				-0.2
5,318,422	+				-0.0
5,318,425	-				-0.5
5,318,430	-				-0.2
5,318,430	-				+0.5
5,318,430	-				+0.2
5,318,430	-				-0.2
5,318,475	+				-0.9
5,318,489	+				-0.0
5,318,490	+				+0.8
5,318,494	+				-2.2
5,318,504	+				+0.1
5,318,504	+				-0.4
5,318,512	-				-0.2
5,318,522	+				-0.3
5,318,536	+				-0.8
5,318,608	+				-0.2
5,318,616	-				-1.7
5,318,661	+				-1.6
5,318,661	+				-0.4
5,318,661	+				-1.4
5,318,669	-				+1.0
5,318,679	-				+0.8
5,318,690	+				+0.3
5,318,698	-				-0.4
5,318,698	-				-0.5
5,318,698	-				-2.8
5,318,702	+				-0.2
5,318,702	-				-0.3
5,318,710	-		GFF5326	0.11	-0.1
5,318,710	-		GFF5326	0.11	-0.3
5,318,722	+		GFF5326	0.13	-1.2
5,318,757	+		GFF5326	0.19	-0.0
5,318,757	+		GFF5326	0.19	-0.2
5,318,764	+		GFF5326	0.20	+0.4
5,318,764	+		GFF5326	0.20	+0.8
5,318,765	-		GFF5326	0.20	+1.0
5,318,772	+		GFF5326	0.21	-2.3
5,318,772	-		GFF5326	0.21	-0.2
5,318,783	+		GFF5326	0.23	+0.1
5,318,783	+		GFF5326	0.23	-0.3
5,318,783	+		GFF5326	0.23	+0.2
5,318,783	+		GFF5326	0.23	-0.2
5,318,783	+		GFF5326	0.23	-0.3
5,318,783	+		GFF5326	0.23	+0.4
5,318,783	+		GFF5326	0.23	+1.1
5,318,783	+		GFF5326	0.23	+0.3
5,318,791	-		GFF5326	0.25	+0.8
5,318,791	-		GFF5326	0.25	+1.1
5,318,791	-		GFF5326	0.25	-1.8
5,318,791	-		GFF5326	0.25	-0.8
5,318,791	-		GFF5326	0.25	-0.9
5,318,791	-		GFF5326	0.25	-1.5
5,318,791	-		GFF5326	0.25	+0.0
5,318,791	-		GFF5326	0.25	+0.6
5,318,791	-		GFF5326	0.25	-0.4
5,318,791	-		GFF5326	0.25	-0.7
5,318,793	+		GFF5326	0.25	+0.1
5,318,793	-		GFF5326	0.25	+0.1
5,318,793	-		GFF5326	0.25	-1.5
5,318,802	+		GFF5326	0.26	-0.6
5,318,820	+		GFF5326	0.30	-2.3
5,318,820	+		GFF5326	0.30	+0.2
5,318,820	+		GFF5326	0.30	-1.5
5,318,820	+		GFF5326	0.30	+0.3
5,318,820	+		GFF5326	0.30	-1.4
5,318,828	-		GFF5326	0.31	+0.1
5,318,828	-		GFF5326	0.31	-0.7
5,318,828	-		GFF5326	0.31	-0.1
5,318,828	-		GFF5326	0.31	+0.8
5,318,828	-		GFF5326	0.31	-1.3
5,318,828	-		GFF5326	0.31	+1.0
5,318,830	+		GFF5326	0.31	-0.2
5,318,830	+		GFF5326	0.31	-0.5
5,318,838	-		GFF5326	0.33	-0.5
5,318,843	+		GFF5326	0.34	+0.7
5,318,848	+		GFF5326	0.34	+0.5
5,318,849	-		GFF5326	0.35	+0.7
5,318,856	-		GFF5326	0.36	-0.2
5,318,858	+		GFF5326	0.36	-0.1
5,318,858	+		GFF5326	0.36	-1.2
5,318,858	+		GFF5326	0.36	+0.5
5,318,861	-		GFF5326	0.37	-1.1
5,318,861	-		GFF5326	0.37	-2.1
5,318,861	-		GFF5326	0.37	-0.5
5,318,866	-		GFF5326	0.37	-0.0
5,318,866	-		GFF5326	0.37	-0.9
5,318,866	-		GFF5326	0.37	-0.0
5,318,882	-		GFF5326	0.40	+1.1
5,318,889	+		GFF5326	0.41	+1.0
5,318,891	+		GFF5326	0.42	+0.1
5,318,926	+		GFF5326	0.48	-2.6
5,318,945	+		GFF5326	0.51	+0.1
5,318,945	+		GFF5326	0.51	-1.2
5,318,945	+		GFF5326	0.51	-0.8
5,318,945	+		GFF5326	0.51	-1.0
5,318,945	-		GFF5326	0.51	+0.1
5,318,953	-		GFF5326	0.52	+0.9
5,318,963	+		GFF5326	0.54	-1.6
5,318,967	+		GFF5326	0.55	-1.7
5,318,973	+		GFF5326	0.56	-0.9
5,319,007	+		GFF5326	0.62	+0.4
5,319,009	+		GFF5326	0.62	-0.4
5,319,009	+		GFF5326	0.62	-0.7
5,319,025	-		GFF5326	0.65	-0.5
5,319,034	-		GFF5326	0.66	-0.6
5,319,107	+		GFF5326	0.79	-0.3
5,319,114	+		GFF5326	0.80	+0.1
5,319,130	-		GFF5326	0.83	-0.2
5,319,137	+		GFF5326	0.84	+0.0
5,319,145	-		GFF5326	0.85	-0.6
5,319,178	-				-0.3
5,319,183	-				-0.5
5,319,203	+				-0.2
5,319,203	+				+0.2
5,319,210	+				+0.8
5,319,211	-				+1.4
5,319,211	-				+0.2
5,319,211	-				-0.1
5,319,226	-				+1.6
5,319,228	+				+0.9
5,319,228	+				+0.9
5,319,228	+				-0.7
5,319,228	+				+0.7
5,319,228	+				+0.3
5,319,228	+				-0.7
5,319,228	+				-1.0
5,319,228	+				-0.5
5,319,228	+				-0.6
5,319,228	+				-0.7
5,319,228	-				+0.5
5,319,236	-				+1.1
5,319,236	-				-0.8
5,319,236	-				-0.5
5,319,236	-				-1.8
5,319,252	-				+0.3
5,319,260	+				-1.4
5,319,268	-				-1.1
5,319,301	+				-0.1
5,319,309	-				+0.4
5,319,311	+				-0.4
5,319,314	-				+0.9
5,319,319	-				-1.2
5,319,320	-				-1.3
5,319,346	+				-1.5
5,319,346	+				-0.9
5,319,346	+				+0.3
5,319,351	+				-1.5
5,319,351	+				+0.2
5,319,354	+				-0.9
5,319,354	-				+0.2
5,319,354	-				-1.6
5,319,354	-				-1.3
5,319,354	-				+0.1
5,319,359	-				-0.2
5,319,360	+				-0.6
5,319,367	-				+0.3
5,319,374	+				-0.5
5,319,374	+				-1.1
5,319,382	-				-0.3
5,319,383	-				+0.1
5,319,383	-				+1.4
5,319,392	+				+1.0
5,319,392	+				+0.1
5,319,399	-				+0.2
5,319,410	+				-1.0
5,319,420	+				-0.1
5,319,451	-				-0.2
5,319,471	+				-0.0
5,319,479	+				-0.4
5,319,479	+				-0.8
5,319,479	-				+0.4
5,319,496	+				-0.5
5,319,502	-				-0.4
5,319,504	-				-1.8
5,319,504	-				-0.4
5,319,506	-				-0.6
5,319,514	+				-1.3
5,319,519	+				+0.9
5,319,524	+				-0.7
5,319,524	+				-0.1
5,319,527	-				-2.7
5,319,529	+				+1.6
5,319,529	+				-0.1
5,319,529	+				-0.9
5,319,529	+				-0.8
5,319,529	+				-0.7
5,319,529	+				-2.2
5,319,535	+				-0.1
5,319,535	+				-0.6
5,319,537	-				+0.2
5,319,537	-				-0.3
5,319,537	-				-1.5
5,319,537	-				+0.1
5,319,537	-				-0.7
5,319,537	-				-0.4
5,319,537	-				+1.0
5,319,542	+				-0.0
5,319,542	-				-1.4
5,319,543	-				+0.4
5,319,550	-				-1.5
5,319,550	-				+0.5
5,319,552	-				+0.1
5,319,587	-				-0.9
5,319,587	-				-0.6
5,319,587	-				+0.1
5,319,620	+				-2.5
5,319,630	+				-1.6
5,319,630	+				+1.6
5,319,636	-		GFF5327	0.10	-0.1
5,319,643	-		GFF5327	0.11	-0.6
5,319,648	+		GFF5327	0.11	-0.2
5,319,649	+		GFF5327	0.12	-0.6
5,319,657	-		GFF5327	0.12	+1.0
5,319,667	+		GFF5327	0.13	-1.9
5,319,667	+		GFF5327	0.13	-0.1
5,319,667	-		GFF5327	0.13	+0.4
5,319,667	-		GFF5327	0.13	-0.3
5,319,667	-		GFF5327	0.13	-0.7
5,319,675	-		GFF5327	0.14	-0.9
5,319,682	+		GFF5327	0.15	-0.9
5,319,682	+		GFF5327	0.15	-1.6
5,319,682	+		GFF5327	0.15	+0.9
5,319,682	+		GFF5327	0.15	-0.0
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5,319,682	+		GFF5327	0.15	+0.4
5,319,682	+		GFF5327	0.15	-0.2
5,319,682	+		GFF5327	0.15	-1.4
5,319,690	-		GFF5327	0.16	-1.5
5,319,690	-		GFF5327	0.16	-1.0
5,319,690	-		GFF5327	0.16	+1.1
5,319,692	+		GFF5327	0.16	-0.5
5,319,705	+		GFF5327	0.17	-1.9
5,319,705	+		GFF5327	0.17	-0.4
5,319,711	+		GFF5327	0.18	-2.4
5,319,712	+		GFF5327	0.18	-0.2
5,319,713	-		GFF5327	0.18	-2.1
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5,319,720	-		GFF5327	0.19	+0.5
5,319,722	+		GFF5327	0.19	+0.5
5,319,722	+		GFF5327	0.19	-0.7
5,319,730	-		GFF5327	0.20	-1.1
5,319,737	-		GFF5327	0.20	-0.9
5,319,747	+		GFF5327	0.21	-2.0
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5,319,759	+		GFF5327	0.22	-2.0
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5,319,759	+		GFF5327	0.22	-0.3
5,319,759	+		GFF5327	0.22	-1.8
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5,319,771	+		GFF5327	0.24	-0.7
5,319,778	+		GFF5327	0.24	-0.4
5,319,778	+		GFF5327	0.24	+0.0
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5,319,783	+		GFF5327	0.25	-0.8
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5,319,786	-		GFF5327	0.25	-0.9
5,319,787	-		GFF5327	0.25	-1.1
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5,319,807	+		GFF5327	0.27	-0.8
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5,319,810	-		GFF5327	0.27	-0.9
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5,319,817	+		GFF5327	0.28	+0.5
5,319,817	+		GFF5327	0.28	-0.8
5,319,817	-		GFF5327	0.28	-0.9
5,319,826	+		GFF5327	0.29	-1.0
5,319,833	+		GFF5327	0.30	-1.3
5,319,833	+		GFF5327	0.30	+0.2
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5,319,852	+		GFF5327	0.32	-0.9
5,319,862	+		GFF5327	0.33	-2.9
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5,319,912	+		GFF5327	0.37	+0.1
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5,319,965	+		GFF5327	0.43	-0.3
5,319,965	+		GFF5327	0.43	-0.7
5,319,973	-		GFF5327	0.43	+1.1
5,319,973	-		GFF5327	0.43	-0.1
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5,319,984	+		GFF5327	0.45	-0.9
5,319,984	+		GFF5327	0.45	-1.0
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5,319,992	-		GFF5327	0.45	-1.5
5,319,992	-		GFF5327	0.45	+0.8
5,319,997	+		GFF5327	0.46	-1.6
5,319,998	+		GFF5327	0.46	-0.5
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5,320,005	-		GFF5327	0.47	+0.7
5,320,009	+		GFF5327	0.47	-1.4
5,320,009	+		GFF5327	0.47	-0.7
5,320,009	+		GFF5327	0.47	+0.7
5,320,009	+		GFF5327	0.47	+0.7
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5,320,017	-		GFF5327	0.48	-1.0
5,320,017	-		GFF5327	0.48	+0.5
5,320,017	-		GFF5327	0.48	-1.7
5,320,017	-		GFF5327	0.48	-0.3
5,320,023	+		GFF5327	0.48	+0.0
5,320,023	+		GFF5327	0.48	-0.6
5,320,030	+		GFF5327	0.49	+0.9
5,320,031	+		GFF5327	0.49	-0.8
5,320,031	+		GFF5327	0.49	-1.2
5,320,031	+		GFF5327	0.49	+0.2
5,320,038	-		GFF5327	0.50	+0.1
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5,320,049	-		GFF5327	0.51	-0.4
5,320,049	-		GFF5327	0.51	+0.4
5,320,049	-		GFF5327	0.51	+0.6
5,320,059	-		GFF5327	0.52	-0.2
5,320,096	+		GFF5327	0.56	-0.1
5,320,097	+		GFF5327	0.56	-1.6
5,320,097	+		GFF5327	0.56	+1.5
5,320,097	+		GFF5327	0.56	-0.0
5,320,098	-		GFF5327	0.56	-0.7
5,320,098	-		GFF5327	0.56	-1.5
5,320,118	+		GFF5327	0.58	+0.7
5,320,118	+		GFF5327	0.58	+0.3
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5,320,126	-		GFF5327	0.59	+1.0
5,320,131	-		GFF5327	0.59	-0.1
5,320,155	-		GFF5327	0.61	-0.0
5,320,158	+		GFF5327	0.62	-0.1
5,320,187	+		GFF5327	0.65	-0.9
5,320,192	+		GFF5327	0.65	-1.8
5,320,195	+		GFF5327	0.65	-0.5
5,320,200	+		GFF5327	0.66	-0.8
5,320,200	+		GFF5327	0.66	-0.3
5,320,219	-		GFF5327	0.68	-0.7
5,320,220	+		GFF5327	0.68	-1.8
5,320,229	+		GFF5327	0.69	-0.3
5,320,229	+		GFF5327	0.69	+0.9