Strain Fitness in Sphingobium sp. HT1-2 around GFF5275

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,265,645	-		GFF5274	0.72	+1.0
5,265,661	+		GFF5274	0.72	+0.5
5,265,661	+		GFF5274	0.72	-0.8
5,265,671	+		GFF5274	0.72	+0.2
5,265,692	+		GFF5274	0.73	-2.1
5,265,692	-		GFF5274	0.73	-0.5
5,265,726	+		GFF5274	0.74	+0.1
5,265,734	-		GFF5274	0.74	+0.6
5,265,749	+		GFF5274	0.75	+1.3
5,265,749	+		GFF5274	0.75	-0.0
5,265,767	-		GFF5274	0.75	+1.0
5,265,777	+		GFF5274	0.76	+0.6
5,265,787	+		GFF5274	0.76	-2.3
5,265,787	+		GFF5274	0.76	+0.2
5,265,792	-		GFF5274	0.76	+0.4
5,265,795	-		GFF5274	0.76	-0.3
5,265,845	+		GFF5274	0.78	-1.4
5,265,846	-		GFF5274	0.78	-0.5
5,265,846	-		GFF5274	0.78	+0.5
5,265,861	-		GFF5274	0.78	+0.4
5,265,920	+		GFF5274	0.80	-1.5
5,265,928	-		GFF5274	0.80	+0.3
5,265,928	-		GFF5274	0.80	+0.3
5,265,928	-		GFF5274	0.80	-0.6
5,265,928	-		GFF5274	0.80	+0.3
5,265,947	+		GFF5274	0.81	+0.2
5,265,967	+		GFF5274	0.82	-0.1
5,265,986	+		GFF5274	0.82	+0.1
5,265,986	+		GFF5274	0.82	-0.4
5,265,986	+		GFF5274	0.82	-0.3
5,265,994	-		GFF5274	0.82	-1.8
5,266,010	-		GFF5274	0.83	+0.2
5,266,030	+		GFF5274	0.84	+0.8
5,266,030	+		GFF5274	0.84	-1.1
5,266,030	+		GFF5274	0.84	-0.0
5,266,036	+		GFF5274	0.84	-0.0
5,266,038	-		GFF5274	0.84	+0.8
5,266,038	-		GFF5274	0.84	+1.8
5,266,040	+		GFF5274	0.84	+0.7
5,266,046	-		GFF5274	0.84	-1.5
5,266,048	+		GFF5274	0.84	-0.2
5,266,063	+		GFF5274	0.85	-0.3
5,266,064	-		GFF5274	0.85	+0.5
5,266,068	+		GFF5274	0.85	-0.1
5,266,104	+		GFF5274	0.86	+0.0
5,266,112	-		GFF5274	0.86	+0.6
5,266,132	+		GFF5274	0.87	+1.1
5,266,181	+		GFF5274	0.88	-0.6
5,266,186	+		GFF5274	0.88	-0.1
5,266,186	+		GFF5274	0.88	+0.5
5,266,189	-		GFF5274	0.89	-0.6
5,266,189	-		GFF5274	0.89	-1.3
5,266,203	+		GFF5274	0.89	-2.0
5,266,203	+		GFF5274	0.89	+1.2
5,266,211	-		GFF5274	0.89	-1.1
5,266,217	+		GFF5274	0.89	+0.5
5,266,217	+		GFF5274	0.89	+0.2
5,266,225	-		GFF5274	0.90	-1.2
5,266,231	-		GFF5274	0.90	+0.5
5,266,275	-				-0.1
5,266,275	-				+0.5
5,266,283	-				-0.1
5,266,286	+				-0.4
5,266,288	-				+0.2
5,266,298	+				+0.9
5,266,325	+				-2.3
5,266,333	-				-0.7
5,266,333	-				+0.1
5,266,333	-				+0.5
5,266,342	+				-1.6
5,266,350	-				-0.2
5,266,352	+				-0.9
5,266,396	+				-1.8
5,266,403	+				-0.1
5,266,403	+				+1.9
5,266,411	-				-0.3
5,266,411	-				-0.0
5,266,411	-				+0.8
5,266,427	-				+0.2
5,266,429	+				+1.1
5,266,429	+				-0.3
5,266,429	+				+0.4
5,266,432	-				+0.3
5,266,437	-				-0.6
5,266,456	+				+0.6
5,266,456	+				-0.2
5,266,525	+				+0.8
5,266,525	+				+0.1
5,266,533	-				-0.4
5,266,533	-				-2.2
5,266,533	-				+0.3
5,266,535	-				+0.1
5,266,540	-				-0.4
5,266,564	+				-1.5
5,266,569	-				-0.7
5,266,572	+				+0.6
5,266,595	-				-1.5
5,266,596	+				-0.7
5,266,602	+				+0.8
5,266,602	-				+1.0
5,266,602	-				+1.1
5,266,602	-				-0.0
5,266,602	-				+0.1
5,266,604	-				+0.4
5,266,604	-				+0.5
5,266,609	-				-0.5
5,266,609	-				-0.7
5,266,618	-				+0.1
5,266,664	+				-1.3
5,266,664	+				+0.7
5,266,669	+				+0.1
5,266,669	+				+0.3
5,266,669	+				+0.2
5,266,680	+				+0.1
5,266,688	-				+0.1
5,266,688	-				-0.1
5,266,688	-				+0.7
5,266,704	-				-0.8
5,266,732	+				-0.0
5,266,732	+				+1.1
5,266,732	+				+0.1
5,266,732	+				-2.6
5,266,732	+				+1.7
5,266,732	+				+0.7
5,266,740	-				-0.3
5,266,740	-				-0.9
5,266,740	-				+0.1
5,266,740	-				+0.1
5,266,754	+		GFF5275	0.11	-1.2
5,266,754	+		GFF5275	0.11	+0.5
5,266,754	+		GFF5275	0.11	-0.6
5,266,754	+		GFF5275	0.11	+0.8
5,266,754	+		GFF5275	0.11	-1.6
5,266,762	-		GFF5275	0.12	-0.4
5,266,762	-		GFF5275	0.12	-2.4
5,266,776	-		GFF5275	0.13	-0.5
5,266,786	-		GFF5275	0.14	-0.2
5,266,791	-		GFF5275	0.15	+0.9
5,266,791	-		GFF5275	0.15	+2.4
5,266,800	+		GFF5275	0.16	+0.6
5,266,800	+		GFF5275	0.16	-0.7
5,266,806	-		GFF5275	0.16	-1.0
5,266,808	-		GFF5275	0.16	+0.9
5,266,808	-		GFF5275	0.16	+1.2
5,266,808	-		GFF5275	0.16	+0.4
5,266,808	-		GFF5275	0.16	-1.5
5,266,808	-		GFF5275	0.16	-1.9
5,266,834	+		GFF5275	0.19	+0.7
5,266,863	-		GFF5275	0.22	+0.3
5,266,878	-		GFF5275	0.23	-0.7
5,266,878	-		GFF5275	0.23	-0.5
5,266,886	+		GFF5275	0.24	+0.1
5,266,894	-		GFF5275	0.25	-0.8
5,266,909	-		GFF5275	0.26	-2.0
5,266,911	+		GFF5275	0.27	-1.0
5,266,924	-		GFF5275	0.28	-0.5
5,266,924	-		GFF5275	0.28	+0.5
5,266,966	+		GFF5275	0.32	+0.6
5,266,966	+		GFF5275	0.32	-1.2
5,266,966	+		GFF5275	0.32	+0.9
5,266,966	+		GFF5275	0.32	-0.9
5,266,966	+		GFF5275	0.32	-0.3
5,266,966	+		GFF5275	0.32	-0.0
5,266,966	+		GFF5275	0.32	+0.3
5,266,974	-		GFF5275	0.33	-0.6
5,266,974	-		GFF5275	0.33	+0.1
5,266,974	-		GFF5275	0.33	-1.6
5,266,974	-		GFF5275	0.33	+0.1
5,266,974	-		GFF5275	0.33	+0.3
5,266,974	-		GFF5275	0.33	-0.1
5,266,974	-		GFF5275	0.33	+0.4
5,266,974	-		GFF5275	0.33	+1.2
5,266,974	-		GFF5275	0.33	+0.1
5,266,975	-		GFF5275	0.33	+1.1
5,266,985	+		GFF5275	0.34	-0.3
5,266,990	+		GFF5275	0.34	+1.1
5,267,019	-		GFF5275	0.37	-0.9
5,267,026	-		GFF5275	0.38	-1.5
5,267,043	+		GFF5275	0.40	+0.5
5,267,043	+		GFF5275	0.40	+0.3
5,267,051	-		GFF5275	0.40	+0.1
5,267,051	-		GFF5275	0.40	+0.7
5,267,051	-		GFF5275	0.40	-1.6
5,267,051	-		GFF5275	0.40	-0.9
5,267,063	-		GFF5275	0.42	+0.4
5,267,067	-		GFF5275	0.42	+1.0
5,267,080	-		GFF5275	0.43	-0.2
5,267,081	+		GFF5275	0.43	-3.1
5,267,091	+		GFF5275	0.44	-1.4
5,267,101	+		GFF5275	0.45	+1.1
5,267,109	-		GFF5275	0.46	+0.4
5,267,109	-		GFF5275	0.46	+1.2
5,267,109	-		GFF5275	0.46	+1.7
5,267,109	-		GFF5275	0.46	-0.8
5,267,109	-		GFF5275	0.46	-0.8
5,267,111	+		GFF5275	0.46	-0.3
5,267,173	+		GFF5275	0.53	-0.7
5,267,208	-		GFF5275	0.56	-1.9
5,267,208	-		GFF5275	0.56	+0.4
5,267,208	-		GFF5275	0.56	-0.8
5,267,211	+		GFF5275	0.56	-1.1
5,267,242	+		GFF5275	0.59	-0.2
5,267,246	+		GFF5275	0.60	+0.3
5,267,246	+		GFF5275	0.60	+1.5
5,267,246	+		GFF5275	0.60	-0.3
5,267,246	+		GFF5275	0.60	+0.8
5,267,254	-		GFF5275	0.61	+0.1
5,267,254	-		GFF5275	0.61	-0.6
5,267,254	-		GFF5275	0.61	+1.1
5,267,306	+		GFF5275	0.66	+0.5
5,267,314	-		GFF5275	0.66	-0.4
5,267,381	-		GFF5275	0.73	+0.4
5,267,381	-		GFF5275	0.73	-0.1
5,267,381	-		GFF5275	0.73	-0.9
5,267,381	-		GFF5275	0.73	-0.6
5,267,386	-		GFF5275	0.74	-2.7
5,267,442	-		GFF5275	0.79	-0.0
5,267,466	-		GFF5275	0.82	-0.1
5,267,477	-		GFF5275	0.83	+0.7
5,267,506	+		GFF5275	0.85	-1.5
5,267,508	+		GFF5275	0.86	-1.7
5,267,508	+		GFF5275	0.86	+1.7
5,267,516	+		GFF5275	0.86	-2.0
5,267,516	+		GFF5275	0.86	-0.2
5,267,516	+		GFF5275	0.86	-0.5
5,267,516	+		GFF5275	0.86	-0.4
5,267,524	-		GFF5275	0.87	+0.5
5,267,524	-		GFF5275	0.87	-1.0
5,267,524	-		GFF5275	0.87	-1.1
5,267,524	-		GFF5275	0.87	+1.2
5,267,526	-		GFF5275	0.87	-0.1
5,267,561	-				-0.1
5,267,565	+				+0.1
5,267,587	+				-0.9
5,267,608	-				-1.3
5,267,619	+				-0.6
5,267,627	-				+1.0
5,267,627	-				+0.1
5,267,627	-				-0.7
5,267,635	+				+0.2
5,267,642	+				+1.2
5,267,643	-				-0.5
5,267,645	-				-1.6
5,267,648	+				-0.2
5,267,648	+				+0.1
5,267,648	+				+1.3
5,267,648	+				-0.3
5,267,648	+				+0.2
5,267,648	+				-0.2
5,267,648	+				+0.2
5,267,656	-				+1.0
5,267,656	-				-0.3
5,267,656	-				-0.7
5,267,656	-				-0.4
5,267,658	-				+0.8
5,267,680	+				-0.7
5,267,680	+				-0.4
5,267,680	+				+0.0
5,267,687	+		GFF5276	0.11	-1.4
5,267,688	-		GFF5276	0.11	-0.0
5,267,688	-		GFF5276	0.11	+0.6
5,267,688	-		GFF5276	0.11	+0.8
5,267,688	-		GFF5276	0.11	-0.4
5,267,696	-		GFF5276	0.12	+0.2
5,267,696	-		GFF5276	0.12	+0.5
5,267,778	+		GFF5276	0.26	+1.2
5,267,783	+		GFF5276	0.27	+0.0
5,267,786	-		GFF5276	0.27	-0.7
5,267,786	-		GFF5276	0.27	-0.4
5,267,808	+		GFF5276	0.31	+0.9
5,267,820	+		GFF5276	0.33	+1.0
5,267,821	-		GFF5276	0.33	+0.4
5,267,822	-		GFF5276	0.33	-1.0
5,267,831	+		GFF5276	0.35	-1.5
5,267,833	-		GFF5276	0.35	+0.1
5,267,837	+		GFF5276	0.36	-0.5
5,267,837	-		GFF5276	0.36	+0.2
5,267,847	+		GFF5276	0.37	+1.5
5,267,856	-		GFF5276	0.39	-1.9
5,267,871	+		GFF5276	0.41	+0.3
5,267,879	-		GFF5276	0.43	-0.7
5,267,893	-		GFF5276	0.45	+1.7
5,267,904	+		GFF5276	0.47	-0.5
5,267,908	+		GFF5276	0.48	+0.3
5,267,914	+		GFF5276	0.49	+0.5
5,267,927	-		GFF5276	0.51	-0.5
5,267,937	+		GFF5276	0.52	-0.3
5,267,940	-		GFF5276	0.53	+0.3
5,267,940	-		GFF5276	0.53	-1.5
5,267,949	-		GFF5276	0.54	-0.5
5,267,949	-		GFF5276	0.54	-0.0
5,267,950	+		GFF5276	0.55	-0.1
5,267,972	+		GFF5276	0.58	+0.9
5,267,972	+		GFF5276	0.58	-0.9
5,267,980	-		GFF5276	0.60	+1.1
5,267,980	-		GFF5276	0.60	+0.4
5,267,991	+		GFF5276	0.61	+0.7
5,268,005	+		GFF5276	0.64	+0.8
5,268,010	+		GFF5276	0.65	-1.6
5,268,013	-		GFF5276	0.65	-1.4
5,268,015	+		GFF5276	0.65	-2.2
5,268,017	-		GFF5276	0.66	-1.7
5,268,024	+		GFF5276	0.67	-0.4
5,268,024	+		GFF5276	0.67	-0.8
5,268,024	+		GFF5276	0.67	+0.4
5,268,024	+		GFF5276	0.67	-0.1
5,268,024	+		GFF5276	0.67	+1.0
5,268,024	+		GFF5276	0.67	-0.5
5,268,024	+		GFF5276	0.67	+0.4
5,268,032	-		GFF5276	0.68	-0.4
5,268,032	-		GFF5276	0.68	+1.3
5,268,032	-		GFF5276	0.68	-0.0
5,268,032	-		GFF5276	0.68	-0.3
5,268,032	-		GFF5276	0.68	-0.4
5,268,032	-		GFF5276	0.68	+0.4
5,268,032	-		GFF5276	0.68	-1.6
5,268,032	-		GFF5276	0.68	+1.1
5,268,032	-		GFF5276	0.68	-2.3
5,268,032	-		GFF5276	0.68	+0.3
5,268,033	+		GFF5276	0.68	-1.9
5,268,052	-		GFF5276	0.71	+1.5
5,268,057	+		GFF5276	0.72	-0.9
5,268,057	+		GFF5276	0.72	-0.6
5,268,057	+		GFF5276	0.72	+0.3
5,268,065	-		GFF5276	0.74	+0.1
5,268,065	-		GFF5276	0.74	+0.0
5,268,065	-		GFF5276	0.74	-1.7
5,268,084	+		GFF5276	0.77	+0.5
5,268,087	+		GFF5276	0.77	-0.2
5,268,095	+		GFF5276	0.79	-0.5
5,268,103	-		GFF5276	0.80	-0.5
5,268,115	+		GFF5276	0.82	+0.7
5,268,115	+		GFF5276	0.82	-0.0
5,268,115	+		GFF5276	0.82	+0.4
5,268,139	+		GFF5276	0.86	-1.7
5,268,152	+		GFF5276	0.88	-0.4
5,268,157	+		GFF5276	0.89	+0.4
5,268,160	-		GFF5276	0.89	-2.5
5,268,170	-				+0.3
5,268,199	+				+0.6
5,268,207	-				+0.1
5,268,209	-				-0.5
5,268,213	+				+0.7
5,268,223	+				+0.3
5,268,226	-				+0.2
5,268,229	-				+0.8
5,268,231	-				-0.3
5,268,231	-				-1.6
5,268,231	-				+0.7
5,268,278	+				-2.0
5,268,286	+				-2.0
5,268,313	-				-0.3
5,268,342	+				+0.1
5,268,357	+				+0.5
5,268,359	+				+0.2
5,268,359	+				+0.7
5,268,378	+				+0.4
5,268,379	+				-2.0
5,268,385	+				+1.2
5,268,385	+				+0.5
5,268,385	+				-0.3
5,268,385	+				+0.5
5,268,386	+				-2.0
5,268,386	+				-0.3
5,268,393	-				-1.6
5,268,409	+				+0.2
5,268,409	+				-0.1
5,268,409	+				+1.5
5,268,475	+				-0.9
5,268,490	-				-0.6
5,268,494	+				-0.2
5,268,553	-				+0.2
5,268,553	-				-1.4
5,268,553	-				-0.8
5,268,553	-				-1.0