Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5252 and GFF5253 are separated by 65 nucleotides GFF5253 and GFF5254 overlap by 8 nucleotides GFF5254 and GFF5255 are separated by 168 nucleotides GFF5255 and GFF5256 are separated by 317 nucleotides GFF5256 and GFF5257 are separated by 93 nucleotides
GFF5252 - Prevent host death protein, Phd antitoxin, at 5,246,253 to 5,246,525
GFF5252
GFF5253 - hypothetical protein, at 5,246,591 to 5,247,034
GFF5253
GFF5254 - Mobilization protein, at 5,247,027 to 5,247,302
GFF5254
GFF5255 - Mobilization protein MobA @ Conjugal transfer protein TraA, at 5,247,471 to 5,248,682
GFF5255
GFF5256 - Mobile element protein, at 5,249,000 to 5,249,320
GFF5256
GFF5257 - Rhomboid family protein, at 5,249,414 to 5,249,863
GFF5257
Position (kb) 5247
5248
5249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5246.483 kb on - strand, within GFF5252 at 5246.589 kb on + strand at 5246.607 kb on - strand at 5246.628 kb on + strand at 5246.642 kb on - strand, within GFF5253 at 5246.674 kb on + strand, within GFF5253 at 5246.695 kb on + strand, within GFF5253 at 5246.711 kb on + strand, within GFF5253 at 5246.729 kb on + strand, within GFF5253 at 5246.729 kb on + strand, within GFF5253 at 5246.729 kb on + strand, within GFF5253 at 5246.729 kb on + strand, within GFF5253 at 5246.729 kb on + strand, within GFF5253 at 5246.737 kb on - strand, within GFF5253 at 5246.740 kb on + strand, within GFF5253 at 5246.747 kb on - strand, within GFF5253 at 5246.820 kb on + strand, within GFF5253 at 5246.960 kb on - strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.962 kb on + strand, within GFF5253 at 5246.970 kb on - strand, within GFF5253 at 5246.970 kb on - strand, within GFF5253 at 5246.970 kb on - strand, within GFF5253 at 5246.970 kb on - strand, within GFF5253 at 5246.970 kb on - strand, within GFF5253 at 5246.983 kb on + strand, within GFF5253 at 5247.017 kb on + strand at 5247.038 kb on - strand at 5247.055 kb on + strand, within GFF5254 at 5247.055 kb on + strand, within GFF5254 at 5247.063 kb on + strand, within GFF5254 at 5247.070 kb on + strand, within GFF5254 at 5247.081 kb on - strand, within GFF5254 at 5247.135 kb on + strand, within GFF5254 at 5247.170 kb on + strand, within GFF5254 at 5247.193 kb on + strand, within GFF5254 at 5247.201 kb on + strand, within GFF5254 at 5247.201 kb on + strand, within GFF5254 at 5247.201 kb on + strand, within GFF5254 at 5247.214 kb on - strand, within GFF5254 at 5247.250 kb on + strand, within GFF5254 at 5247.257 kb on - strand, within GFF5254 at 5247.257 kb on - strand, within GFF5254 at 5247.539 kb on + strand at 5247.575 kb on + strand at 5247.590 kb on + strand at 5247.625 kb on + strand, within GFF5255 at 5247.625 kb on + strand, within GFF5255 at 5247.650 kb on + strand, within GFF5255 at 5247.778 kb on + strand, within GFF5255 at 5247.778 kb on + strand, within GFF5255 at 5247.778 kb on + strand, within GFF5255 at 5247.778 kb on + strand, within GFF5255 at 5247.778 kb on + strand, within GFF5255 at 5247.788 kb on + strand, within GFF5255 at 5247.798 kb on + strand, within GFF5255 at 5247.814 kb on + strand, within GFF5255 at 5247.820 kb on + strand, within GFF5255 at 5247.852 kb on + strand, within GFF5255 at 5247.884 kb on - strand, within GFF5255 at 5247.898 kb on - strand, within GFF5255 at 5247.922 kb on + strand, within GFF5255 at 5247.929 kb on - strand, within GFF5255 at 5247.937 kb on + strand, within GFF5255 at 5247.964 kb on + strand, within GFF5255 at 5247.968 kb on + strand, within GFF5255 at 5247.969 kb on + strand, within GFF5255 at 5248.011 kb on + strand, within GFF5255 at 5248.047 kb on - strand, within GFF5255 at 5248.079 kb on + strand, within GFF5255 at 5248.079 kb on + strand, within GFF5255 at 5248.087 kb on - strand, within GFF5255 at 5248.097 kb on - strand, within GFF5255 at 5248.113 kb on + strand, within GFF5255 at 5248.157 kb on + strand, within GFF5255 at 5248.182 kb on + strand, within GFF5255 at 5248.187 kb on + strand, within GFF5255 at 5248.190 kb on - strand, within GFF5255 at 5248.195 kb on - strand, within GFF5255 at 5248.258 kb on + strand, within GFF5255 at 5248.258 kb on + strand, within GFF5255 at 5248.258 kb on + strand, within GFF5255 at 5248.268 kb on + strand, within GFF5255 at 5248.282 kb on + strand, within GFF5255 at 5248.302 kb on + strand, within GFF5255 at 5248.310 kb on - strand, within GFF5255 at 5248.310 kb on - strand, within GFF5255 at 5248.362 kb on - strand, within GFF5255 at 5248.372 kb on + strand, within GFF5255 at 5248.372 kb on - strand, within GFF5255 at 5248.567 kb on + strand at 5248.585 kb on + strand at 5248.638 kb on - strand at 5248.657 kb on - strand at 5248.720 kb on + strand at 5248.731 kb on + strand at 5248.754 kb on + strand at 5248.776 kb on + strand at 5248.791 kb on + strand at 5248.794 kb on - strand at 5249.320 kb on + strand at 5249.320 kb on + strand at 5249.320 kb on + strand at 5249.328 kb on - strand at 5249.328 kb on - strand at 5249.328 kb on - strand at 5249.364 kb on + strand at 5249.364 kb on + strand at 5249.372 kb on - strand at 5249.382 kb on + strand at 5249.382 kb on + strand at 5249.382 kb on + strand at 5249.382 kb on + strand at 5249.390 kb on - strand at 5249.390 kb on - strand at 5249.390 kb on - strand at 5249.390 kb on - strand at 5249.406 kb on + strand at 5249.412 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.445 kb on + strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.453 kb on - strand at 5249.462 kb on + strand, within GFF5257 at 5249.474 kb on + strand, within GFF5257 at 5249.475 kb on + strand, within GFF5257 at 5249.475 kb on + strand, within GFF5257 at 5249.496 kb on + strand, within GFF5257 at 5249.501 kb on + strand, within GFF5257 at 5249.501 kb on + strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.509 kb on - strand, within GFF5257 at 5249.520 kb on + strand, within GFF5257 at 5249.521 kb on + strand, within GFF5257 at 5249.538 kb on + strand, within GFF5257 at 5249.546 kb on - strand, within GFF5257 at 5249.551 kb on + strand, within GFF5257 at 5249.559 kb on - strand, within GFF5257 at 5249.559 kb on - strand, within GFF5257 at 5249.564 kb on - strand, within GFF5257 at 5249.564 kb on - strand, within GFF5257 at 5249.566 kb on - strand, within GFF5257 at 5249.583 kb on + strand, within GFF5257 at 5249.601 kb on - strand, within GFF5257 at 5249.601 kb on - strand, within GFF5257 at 5249.601 kb on - strand, within GFF5257 at 5249.631 kb on - strand, within GFF5257 at 5249.662 kb on + strand, within GFF5257 at 5249.666 kb on - strand, within GFF5257 at 5249.675 kb on + strand, within GFF5257
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 5,246,483 - GFF5252 0.84 -0.3 5,246,589 + -1.4 5,246,607 - -1.0 5,246,628 + -0.2 5,246,642 - GFF5253 0.11 -0.1 5,246,674 + GFF5253 0.19 -0.2 5,246,695 + GFF5253 0.23 -1.2 5,246,711 + GFF5253 0.27 -0.1 5,246,729 + GFF5253 0.31 -0.2 5,246,729 + GFF5253 0.31 -0.3 5,246,729 + GFF5253 0.31 -0.5 5,246,729 + GFF5253 0.31 -0.6 5,246,729 + GFF5253 0.31 -2.0 5,246,737 - GFF5253 0.33 -0.6 5,246,740 + GFF5253 0.34 -0.3 5,246,747 - GFF5253 0.35 +0.9 5,246,820 + GFF5253 0.52 -1.1 5,246,960 - GFF5253 0.83 -0.8 5,246,962 + GFF5253 0.84 -0.9 5,246,962 + GFF5253 0.84 -0.1 5,246,962 + GFF5253 0.84 -2.7 5,246,962 + GFF5253 0.84 -1.2 5,246,962 + GFF5253 0.84 +0.3 5,246,962 + GFF5253 0.84 -0.2 5,246,962 + GFF5253 0.84 -1.1 5,246,962 + GFF5253 0.84 -1.6 5,246,962 + GFF5253 0.84 +0.1 5,246,962 + GFF5253 0.84 -3.1 5,246,970 - GFF5253 0.85 +0.5 5,246,970 - GFF5253 0.85 -0.9 5,246,970 - GFF5253 0.85 -0.1 5,246,970 - GFF5253 0.85 -0.5 5,246,970 - GFF5253 0.85 -0.2 5,246,983 + GFF5253 0.88 +0.4 5,247,017 + -0.5 5,247,038 - -1.6 5,247,055 + GFF5254 0.10 -0.8 5,247,055 + GFF5254 0.10 -2.3 5,247,063 + GFF5254 0.13 -0.4 5,247,070 + GFF5254 0.16 -1.2 5,247,081 - GFF5254 0.20 -1.3 5,247,135 + GFF5254 0.39 +0.2 5,247,170 + GFF5254 0.52 -1.2 5,247,193 + GFF5254 0.60 -0.5 5,247,201 + GFF5254 0.63 +0.8 5,247,201 + GFF5254 0.63 -1.9 5,247,201 + GFF5254 0.63 -0.2 5,247,214 - GFF5254 0.68 +0.5 5,247,250 + GFF5254 0.81 +0.5 5,247,257 - GFF5254 0.83 -0.6 5,247,257 - GFF5254 0.83 -0.3 5,247,539 + +0.4 5,247,575 + -0.6 5,247,590 + +0.8 5,247,625 + GFF5255 0.13 +1.9 5,247,625 + GFF5255 0.13 -0.7 5,247,650 + GFF5255 0.15 +0.8 5,247,778 + GFF5255 0.25 +0.1 5,247,778 + GFF5255 0.25 +0.4 5,247,778 + GFF5255 0.25 +0.8 5,247,778 + GFF5255 0.25 -1.9 5,247,778 + GFF5255 0.25 +1.6 5,247,788 + GFF5255 0.26 -0.9 5,247,798 + GFF5255 0.27 -1.6 5,247,814 + GFF5255 0.28 -0.9 5,247,820 + GFF5255 0.29 +0.9 5,247,852 + GFF5255 0.31 +0.5 5,247,884 - GFF5255 0.34 +0.1 5,247,898 - GFF5255 0.35 -0.7 5,247,922 + GFF5255 0.37 -1.3 5,247,929 - GFF5255 0.38 -0.2 5,247,937 + GFF5255 0.38 -0.2 5,247,964 + GFF5255 0.41 -2.2 5,247,968 + GFF5255 0.41 -0.2 5,247,969 + GFF5255 0.41 -0.2 5,248,011 + GFF5255 0.45 -0.5 5,248,047 - GFF5255 0.48 +0.1 5,248,079 + GFF5255 0.50 +0.9 5,248,079 + GFF5255 0.50 -1.8 5,248,087 - GFF5255 0.51 +1.9 5,248,097 - GFF5255 0.52 +0.1 5,248,113 + GFF5255 0.53 -0.9 5,248,157 + GFF5255 0.57 +1.1 5,248,182 + GFF5255 0.59 -1.3 5,248,187 + GFF5255 0.59 -1.3 5,248,190 - GFF5255 0.59 -0.9 5,248,195 - GFF5255 0.60 -1.3 5,248,258 + GFF5255 0.65 -1.1 5,248,258 + GFF5255 0.65 -1.9 5,248,258 + GFF5255 0.65 -1.2 5,248,268 + GFF5255 0.66 +0.1 5,248,282 + GFF5255 0.67 -3.1 5,248,302 + GFF5255 0.69 -0.9 5,248,310 - GFF5255 0.69 +2.1 5,248,310 - GFF5255 0.69 -0.9 5,248,362 - GFF5255 0.74 -0.7 5,248,372 + GFF5255 0.74 -0.4 5,248,372 - GFF5255 0.74 -1.2 5,248,567 + +1.0 5,248,585 + +0.2 5,248,638 - +0.8 5,248,657 - -0.5 5,248,720 + -0.2 5,248,731 + -0.2 5,248,754 + -1.1 5,248,776 + +1.0 5,248,791 + +1.1 5,248,794 - +0.7 5,249,320 + -0.7 5,249,320 + -0.3 5,249,320 + +0.6 5,249,328 - +0.0 5,249,328 - +1.4 5,249,328 - -0.5 5,249,364 + -1.8 5,249,364 + +1.1 5,249,372 - +1.4 5,249,382 + -1.5 5,249,382 + +0.2 5,249,382 + +0.9 5,249,382 + +0.8 5,249,390 - -0.2 5,249,390 - +0.1 5,249,390 - +0.8 5,249,390 - +0.0 5,249,406 + -0.7 5,249,412 + -0.7 5,249,445 + -0.8 5,249,445 + +0.3 5,249,445 + -0.9 5,249,445 + +0.6 5,249,445 + +0.6 5,249,445 + +0.7 5,249,445 + -1.2 5,249,445 + -0.6 5,249,445 + -0.3 5,249,445 + +0.1 5,249,445 + +0.0 5,249,445 + -1.4 5,249,445 + +0.6 5,249,445 + +0.1 5,249,445 + +0.5 5,249,445 + +0.4 5,249,445 + +0.3 5,249,453 - -0.3 5,249,453 - -0.4 5,249,453 - +0.4 5,249,453 - -0.8 5,249,453 - +0.1 5,249,453 - -0.4 5,249,453 - -1.1 5,249,462 + GFF5257 0.11 -0.6 5,249,474 + GFF5257 0.13 +0.2 5,249,475 + GFF5257 0.14 +0.2 5,249,475 + GFF5257 0.14 +0.5 5,249,496 + GFF5257 0.18 -1.2 5,249,501 + GFF5257 0.19 -0.8 5,249,501 + GFF5257 0.19 +0.4 5,249,509 - GFF5257 0.21 -0.3 5,249,509 - GFF5257 0.21 -0.7 5,249,509 - GFF5257 0.21 -1.0 5,249,509 - GFF5257 0.21 -1.6 5,249,509 - GFF5257 0.21 -0.7 5,249,509 - GFF5257 0.21 -0.2 5,249,509 - GFF5257 0.21 +0.3 5,249,520 + GFF5257 0.24 -0.8 5,249,521 + GFF5257 0.24 -1.3 5,249,538 + GFF5257 0.28 -0.7 5,249,546 - GFF5257 0.29 -0.4 5,249,551 + GFF5257 0.30 +0.7 5,249,559 - GFF5257 0.32 +1.6 5,249,559 - GFF5257 0.32 -0.9 5,249,564 - GFF5257 0.33 +0.2 5,249,564 - GFF5257 0.33 -1.2 5,249,566 - GFF5257 0.34 +0.3 5,249,583 + GFF5257 0.38 +0.9 5,249,601 - GFF5257 0.42 +0.5 5,249,601 - GFF5257 0.42 +1.4 5,249,601 - GFF5257 0.42 +2.0 5,249,631 - GFF5257 0.48 -0.9 5,249,662 + GFF5257 0.55 -0.7 5,249,666 - GFF5257 0.56 +0.5 5,249,675 + GFF5257 0.58 -1.5
Or see this region's nucleotide sequence