Strain Fitness in Sphingobium sp. HT1-2 around GFF5246

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5245 and GFF5246 are separated by 50 nucleotidesGFF5246 and GFF5247 are separated by 223 nucleotides GFF5245 - Inner membrane component of tripartite multidrug resistance system, at 5,240,817 to 5,241,965 GFF5245 GFF5246 - Transposase for insertion sequences IS1326/IS1353, at 5,242,016 to 5,242,285 GFF5246 GFF5247 - hypothetical protein, at 5,242,509 to 5,243,966 GFF5247 Position (kb) 5242 5243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5241.021 kb on - strand, within GFF5245at 5241.039 kb on + strand, within GFF5245at 5241.106 kb on - strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.122 kb on + strand, within GFF5245at 5241.128 kb on + strand, within GFF5245at 5241.128 kb on + strand, within GFF5245at 5241.130 kb on - strand, within GFF5245at 5241.130 kb on - strand, within GFF5245at 5241.130 kb on - strand, within GFF5245at 5241.130 kb on - strand, within GFF5245at 5241.163 kb on + strand, within GFF5245at 5241.166 kb on - strand, within GFF5245at 5241.392 kb on + strand, within GFF5245at 5241.393 kb on + strand, within GFF5245at 5241.393 kb on + strand, within GFF5245at 5241.393 kb on + strand, within GFF5245at 5241.398 kb on + strand, within GFF5245at 5241.429 kb on - strand, within GFF5245at 5241.497 kb on - strand, within GFF5245at 5241.522 kb on + strand, within GFF5245at 5241.522 kb on + strand, within GFF5245at 5241.522 kb on + strand, within GFF5245at 5241.522 kb on + strand, within GFF5245at 5241.522 kb on + strand, within GFF5245at 5241.530 kb on - strand, within GFF5245at 5241.530 kb on - strand, within GFF5245at 5241.530 kb on - strand, within GFF5245at 5241.562 kb on + strand, within GFF5245at 5241.578 kb on - strand, within GFF5245at 5241.611 kb on - strand, within GFF5245at 5241.655 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.708 kb on + strand, within GFF5245at 5241.744 kb on + strand, within GFF5245at 5241.753 kb on + strand, within GFF5245at 5241.773 kb on + strand, within GFF5245at 5241.778 kb on + strand, within GFF5245at 5241.798 kb on + strand, within GFF5245at 5241.889 kb on - strandat 5241.889 kb on - strandat 5241.933 kb on - strandat 5241.933 kb on - strandat 5242.243 kb on + strand, within GFF5246at 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.266 kb on - strandat 5242.418 kb on + strandat 5242.424 kb on + strandat 5242.425 kb on + strandat 5242.451 kb on + strandat 5242.497 kb on + strandat 5242.498 kb on - strandat 5242.520 kb on - strandat 5242.524 kb on - strandat 5242.524 kb on - strandat 5242.526 kb on + strandat 5242.527 kb on - strandat 5242.613 kb on + strandat 5242.613 kb on + strandat 5242.613 kb on + strandat 5242.623 kb on + strandat 5242.623 kb on + strandat 5242.628 kb on + strandat 5242.629 kb on + strandat 5242.632 kb on - strandat 5242.648 kb on - strandat 5242.655 kb on + strand, within GFF5247at 5242.655 kb on + strand, within GFF5247at 5242.667 kb on + strand, within GFF5247at 5242.667 kb on + strand, within GFF5247at 5242.673 kb on + strand, within GFF5247at 5242.684 kb on + strand, within GFF5247at 5242.689 kb on + strand, within GFF5247at 5242.696 kb on + strand, within GFF5247at 5242.696 kb on + strand, within GFF5247at 5242.699 kb on - strand, within GFF5247at 5242.724 kb on - strand, within GFF5247at 5242.747 kb on - strand, within GFF5247at 5242.772 kb on + strand, within GFF5247at 5242.780 kb on - strand, within GFF5247at 5242.780 kb on - strand, within GFF5247at 5242.796 kb on + strand, within GFF5247at 5242.799 kb on - strand, within GFF5247at 5242.799 kb on - strand, within GFF5247at 5242.867 kb on + strand, within GFF5247at 5242.875 kb on - strand, within GFF5247at 5242.903 kb on + strand, within GFF5247at 5242.903 kb on + strand, within GFF5247at 5242.911 kb on - strand, within GFF5247at 5242.913 kb on + strand, within GFF5247at 5242.942 kb on - strand, within GFF5247at 5242.954 kb on - strand, within GFF5247at 5242.976 kb on - strand, within GFF5247at 5243.003 kb on + strand, within GFF5247at 5243.003 kb on + strand, within GFF5247at 5243.003 kb on + strand, within GFF5247at 5243.003 kb on + strand, within GFF5247at 5243.009 kb on + strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.011 kb on - strand, within GFF5247at 5243.028 kb on + strand, within GFF5247at 5243.091 kb on + strand, within GFF5247at 5243.097 kb on - strand, within GFF5247at 5243.099 kb on - strand, within GFF5247at 5243.157 kb on - strand, within GFF5247at 5243.166 kb on - strand, within GFF5247at 5243.176 kb on - strand, within GFF5247at 5243.210 kb on - strand, within GFF5247at 5243.278 kb on + strand, within GFF5247at 5243.278 kb on + strand, within GFF5247at 5243.278 kb on + strand, within GFF5247

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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5,241,021 - GFF5245 0.18 -0.0
5,241,039 + GFF5245 0.19 -0.3
5,241,106 - GFF5245 0.25 +0.3
5,241,122 + GFF5245 0.27 -0.4
5,241,122 + GFF5245 0.27 -0.0
5,241,122 + GFF5245 0.27 +0.1
5,241,122 + GFF5245 0.27 -0.6
5,241,122 + GFF5245 0.27 +1.3
5,241,122 + GFF5245 0.27 +0.5
5,241,128 + GFF5245 0.27 -0.4
5,241,128 + GFF5245 0.27 +1.5
5,241,130 - GFF5245 0.27 +0.5
5,241,130 - GFF5245 0.27 +0.3
5,241,130 - GFF5245 0.27 -0.1
5,241,130 - GFF5245 0.27 -1.7
5,241,163 + GFF5245 0.30 +1.7
5,241,166 - GFF5245 0.30 -0.4
5,241,392 + GFF5245 0.50 -1.8
5,241,393 + GFF5245 0.50 -1.1
5,241,393 + GFF5245 0.50 +1.1
5,241,393 + GFF5245 0.50 -0.1
5,241,398 + GFF5245 0.51 +0.6
5,241,429 - GFF5245 0.53 +0.6
5,241,497 - GFF5245 0.59 -0.4
5,241,522 + GFF5245 0.61 -0.1
5,241,522 + GFF5245 0.61 -0.2
5,241,522 + GFF5245 0.61 +0.2
5,241,522 + GFF5245 0.61 -1.2
5,241,522 + GFF5245 0.61 -1.3
5,241,530 - GFF5245 0.62 +0.6
5,241,530 - GFF5245 0.62 -0.2
5,241,530 - GFF5245 0.62 +0.3
5,241,562 + GFF5245 0.65 -1.7
5,241,578 - GFF5245 0.66 +1.4
5,241,611 - GFF5245 0.69 -0.5
5,241,655 + GFF5245 0.73 +0.2
5,241,708 + GFF5245 0.78 +0.2
5,241,708 + GFF5245 0.78 -0.6
5,241,708 + GFF5245 0.78 -0.3
5,241,708 + GFF5245 0.78 +0.4
5,241,708 + GFF5245 0.78 -1.9
5,241,708 + GFF5245 0.78 +0.6
5,241,744 + GFF5245 0.81 +0.8
5,241,753 + GFF5245 0.81 +1.1
5,241,773 + GFF5245 0.83 +0.2
5,241,778 + GFF5245 0.84 +0.6
5,241,798 + GFF5245 0.85 +1.1
5,241,889 - +0.6
5,241,889 - +0.2
5,241,933 - -2.5
5,241,933 - -1.0
5,242,243 + GFF5246 0.84 -1.5
5,242,266 - -0.1
5,242,266 - -1.5
5,242,266 - +0.8
5,242,266 - -2.8
5,242,266 - +0.6
5,242,266 - -1.7
5,242,266 - -0.4
5,242,266 - -0.2
5,242,266 - -0.9
5,242,266 - +0.7
5,242,266 - -0.8
5,242,266 - -1.5
5,242,266 - -1.1
5,242,266 - -0.1
5,242,418 + -0.5
5,242,424 + -1.7
5,242,425 + +0.5
5,242,451 + +1.0
5,242,497 + -1.5
5,242,498 - -1.7
5,242,520 - -0.4
5,242,524 - -0.7
5,242,524 - +0.4
5,242,526 + -0.2
5,242,527 - -1.2
5,242,613 + -0.6
5,242,613 + +0.1
5,242,613 + -1.6
5,242,623 + -1.0
5,242,623 + -1.1
5,242,628 + -2.8
5,242,629 + +0.4
5,242,632 - -2.2
5,242,648 - -1.2
5,242,655 + GFF5247 0.10 -2.5
5,242,655 + GFF5247 0.10 -1.9
5,242,667 + GFF5247 0.11 -1.6
5,242,667 + GFF5247 0.11 -1.7
5,242,673 + GFF5247 0.11 -1.1
5,242,684 + GFF5247 0.12 -0.9
5,242,689 + GFF5247 0.12 -0.1
5,242,696 + GFF5247 0.13 -1.6
5,242,696 + GFF5247 0.13 -0.0
5,242,699 - GFF5247 0.13 -0.3
5,242,724 - GFF5247 0.15 -2.0
5,242,747 - GFF5247 0.16 +2.1
5,242,772 + GFF5247 0.18 -2.6
5,242,780 - GFF5247 0.19 -1.8
5,242,780 - GFF5247 0.19 -1.1
5,242,796 + GFF5247 0.20 +0.9
5,242,799 - GFF5247 0.20 -1.7
5,242,799 - GFF5247 0.20 +0.6
5,242,867 + GFF5247 0.25 +0.1
5,242,875 - GFF5247 0.25 +0.7
5,242,903 + GFF5247 0.27 -1.5
5,242,903 + GFF5247 0.27 -1.3
5,242,911 - GFF5247 0.28 -1.0
5,242,913 + GFF5247 0.28 -0.6
5,242,942 - GFF5247 0.30 -0.1
5,242,954 - GFF5247 0.31 -0.3
5,242,976 - GFF5247 0.32 +0.7
5,243,003 + GFF5247 0.34 -0.8
5,243,003 + GFF5247 0.34 -1.9
5,243,003 + GFF5247 0.34 -0.7
5,243,003 + GFF5247 0.34 -2.3
5,243,009 + GFF5247 0.34 -1.8
5,243,011 - GFF5247 0.34 +1.7
5,243,011 - GFF5247 0.34 +0.1
5,243,011 - GFF5247 0.34 -2.5
5,243,011 - GFF5247 0.34 +0.5
5,243,011 - GFF5247 0.34 -0.6
5,243,011 - GFF5247 0.34 -2.3
5,243,011 - GFF5247 0.34 +0.8
5,243,011 - GFF5247 0.34 -1.8
5,243,011 - GFF5247 0.34 -0.0
5,243,011 - GFF5247 0.34 -2.0
5,243,011 - GFF5247 0.34 -1.0
5,243,011 - GFF5247 0.34 -1.6
5,243,028 + GFF5247 0.36 +0.2
5,243,091 + GFF5247 0.40 -2.9
5,243,097 - GFF5247 0.40 -1.9
5,243,099 - GFF5247 0.40 -0.5
5,243,157 - GFF5247 0.44 -0.5
5,243,166 - GFF5247 0.45 +0.5
5,243,176 - GFF5247 0.46 -2.2
5,243,210 - GFF5247 0.48 -2.3
5,243,278 + GFF5247 0.53 -0.3
5,243,278 + GFF5247 0.53 -0.2
5,243,278 + GFF5247 0.53 -0.4

Or see this region's nucleotide sequence