Strain Fitness in Sphingobium sp. HT1-2 around GFF5190

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,185,471	-				+0.3
5,185,473	+				-0.5
5,185,473	+				+2.1
5,185,494	+				+0.3
5,185,494	+				-0.1
5,185,513	+				-0.9
5,185,521	-				-0.2
5,185,533	+				+0.7
5,185,543	+				+0.1
5,185,543	+				+0.9
5,185,543	+				-1.3
5,185,543	+				-0.8
5,185,543	+				-0.1
5,185,543	+				-0.8
5,185,543	+				-1.1
5,185,551	-				+0.1
5,185,551	-				+0.4
5,185,551	-				+0.1
5,185,551	-				-0.9
5,185,551	-				-0.5
5,185,551	-				-0.3
5,185,551	-				-1.7
5,185,553	+				-1.2
5,185,553	+				-1.2
5,185,553	+				+0.4
5,185,553	+				+0.3
5,185,558	+				-0.2
5,185,558	+				-0.0
5,185,566	-				+0.7
5,185,578	+				+0.1
5,185,583	+				-1.6
5,185,586	-				+0.1
5,185,586	-				+0.6
5,185,588	+				-1.0
5,185,588	+				-0.3
5,185,591	-				+0.2
5,185,596	-				-0.0
5,185,596	-				+0.4
5,185,596	-				-1.1
5,185,663	-		GFF5189	0.21	-1.3
5,185,688	-		GFF5189	0.25	-1.7
5,185,810	+		GFF5189	0.48	-0.2
5,185,810	+		GFF5189	0.48	+0.7
5,185,810	+		GFF5189	0.48	-0.3
5,185,810	+		GFF5189	0.48	-0.6
5,185,810	+		GFF5189	0.48	-1.6
5,185,810	+		GFF5189	0.48	-0.0
5,185,818	-		GFF5189	0.50	+0.6
5,185,827	+		GFF5189	0.52	-1.5
5,185,827	+		GFF5189	0.52	-1.1
5,185,830	-		GFF5189	0.52	+0.7
5,185,835	-		GFF5189	0.53	-1.0
5,185,835	-		GFF5189	0.53	-1.6
5,185,835	-		GFF5189	0.53	+0.1
5,185,845	+		GFF5189	0.55	-0.5
5,185,845	+		GFF5189	0.55	-0.2
5,185,851	+		GFF5189	0.56	-1.0
5,185,859	-		GFF5189	0.58	-0.2
5,185,864	-		GFF5189	0.59	+0.6
5,185,864	-		GFF5189	0.59	-1.9
5,185,874	+		GFF5189	0.60	+1.0
5,185,886	+		GFF5189	0.63	+0.6
5,185,886	+		GFF5189	0.63	+0.1
5,185,886	+		GFF5189	0.63	-0.5
5,185,891	+		GFF5189	0.64	-0.8
5,185,894	-		GFF5189	0.64	+0.7
5,185,894	-		GFF5189	0.64	+0.3
5,185,913	-		GFF5189	0.68	-0.7
5,185,918	-		GFF5189	0.69	-0.0
5,185,929	+		GFF5189	0.71	-0.9
5,185,929	+		GFF5189	0.71	-0.9
5,185,929	+		GFF5189	0.71	-0.2
5,185,937	-		GFF5189	0.72	-1.2
5,185,937	-		GFF5189	0.72	-0.2
5,185,937	-		GFF5189	0.72	+0.5
5,185,958	+		GFF5189	0.76	-1.6
5,185,958	+		GFF5189	0.76	-0.4
5,185,966	-		GFF5189	0.78	-2.6
5,185,966	-		GFF5189	0.78	+0.2
5,185,966	-		GFF5189	0.78	+0.2
5,185,983	-		GFF5189	0.81	-0.1
5,185,992	+		GFF5189	0.83	-0.3
5,186,000	-		GFF5189	0.84	-0.7
5,186,007	+		GFF5189	0.85	-1.0
5,186,017	+		GFF5189	0.87	-1.1
5,186,024	-		GFF5189	0.89	-1.0
5,186,062	-				-1.5
5,186,078	+				-1.5
5,186,095	-				+0.6
5,186,100	-				+0.5
5,186,106	+				-1.0
5,186,127	+				-0.3
5,186,162	+				+0.5
5,186,165	-				+0.0
5,186,182	+				-1.0
5,186,182	+				-0.9
5,186,190	-				-0.8
5,186,190	-				+0.7
5,186,190	-				+0.1
5,186,190	-				+1.1
5,186,205	+				-0.0
5,186,213	-				+0.4
5,186,282	+				-0.1
5,186,282	+				+0.2
5,186,282	+				-2.0
5,186,282	+				+0.4
5,186,283	-				-0.6
5,186,287	+				-0.7
5,186,290	-				-0.6
5,186,290	-				+0.6
5,186,290	-				-1.1
5,186,290	-				+0.1
5,186,290	-				-0.6
5,186,290	-				+0.2
5,186,290	-				+1.0
5,186,295	-				+0.3
5,186,324	-				+1.1
5,186,326	+				+0.4
5,186,346	-				-0.2
5,186,372	+				+0.7
5,186,372	+				-0.0
5,186,372	+				+0.7
5,186,372	+				+0.4
5,186,380	-				-1.0
5,186,380	-				-1.1
5,186,380	-				+0.8
5,186,380	-				-1.0
5,186,380	-				+0.2
5,186,380	-				-0.6
5,186,382	+				-0.7
5,186,385	-				+0.5
5,186,386	-				+0.1
5,186,390	-				-1.1
5,186,396	+				-0.0
5,186,619	+		GFF5190	0.29	-1.8
5,186,639	+		GFF5190	0.33	+0.2
5,186,641	+		GFF5190	0.33	+0.4
5,186,647	-		GFF5190	0.34	+0.9
5,186,647	-		GFF5190	0.34	-0.8
5,186,648	+		GFF5190	0.34	-1.9
5,186,656	+		GFF5190	0.36	-0.1
5,186,664	+		GFF5190	0.37	+0.0
5,186,664	+		GFF5190	0.37	+0.7
5,186,664	+		GFF5190	0.37	-0.3
5,186,672	-		GFF5190	0.39	+0.7
5,186,672	-		GFF5190	0.39	+0.6
5,186,672	-		GFF5190	0.39	-1.0
5,186,672	-		GFF5190	0.39	-1.7
5,186,701	+		GFF5190	0.44	-0.3
5,186,701	+		GFF5190	0.44	-2.5
5,186,703	+		GFF5190	0.45	+0.0
5,186,709	-		GFF5190	0.46	+0.3
5,186,709	-		GFF5190	0.46	+0.2
5,186,711	+		GFF5190	0.46	-1.4
5,186,711	+		GFF5190	0.46	+1.1
5,186,719	-		GFF5190	0.48	+0.2
5,186,719	-		GFF5190	0.48	-1.0
5,186,719	-		GFF5190	0.48	-1.6
5,186,719	-		GFF5190	0.48	-0.1
5,186,720	+		GFF5190	0.48	+0.4
5,186,764	+		GFF5190	0.56	+0.1
5,186,769	+		GFF5190	0.57	+0.7
5,186,771	+		GFF5190	0.57	-1.2
5,186,780	+		GFF5190	0.59	-0.7
5,186,785	+		GFF5190	0.60	+0.5
5,186,794	-		GFF5190	0.62	-1.0
5,186,800	+		GFF5190	0.63	-0.5
5,186,811	+		GFF5190	0.65	-0.0
5,186,811	+		GFF5190	0.65	-1.8
5,186,811	+		GFF5190	0.65	-0.0
5,186,811	+		GFF5190	0.65	+0.2
5,186,811	+		GFF5190	0.65	+0.0
5,186,811	+		GFF5190	0.65	-2.2
5,186,811	+		GFF5190	0.65	+1.0
5,186,812	-		GFF5190	0.65	-1.6
5,186,812	-		GFF5190	0.65	-1.0
5,186,813	-		GFF5190	0.65	-0.1
5,186,814	-		GFF5190	0.66	-0.6
5,186,819	-		GFF5190	0.66	+1.0
5,186,819	-		GFF5190	0.66	-0.5
5,186,819	-		GFF5190	0.66	-1.1
5,186,819	-		GFF5190	0.66	-0.7
5,186,819	-		GFF5190	0.66	-0.7
5,186,821	+		GFF5190	0.67	-1.0
5,186,821	+		GFF5190	0.67	-0.7
5,186,829	-		GFF5190	0.68	-0.0
5,186,829	-		GFF5190	0.68	-2.1
5,186,849	+		GFF5190	0.72	-0.8
5,186,873	+		GFF5190	0.77	-0.0
5,186,882	+		GFF5190	0.78	-2.8
5,186,885	-		GFF5190	0.79	-1.2
5,186,890	-		GFF5190	0.80	+0.1
5,186,893	+		GFF5190	0.80	+0.7
5,186,893	+		GFF5190	0.80	-1.5
5,186,893	+		GFF5190	0.80	-2.5
5,186,901	-		GFF5190	0.82	-0.5
5,186,901	-		GFF5190	0.82	-1.1
5,186,901	-		GFF5190	0.82	-0.3
5,186,901	-		GFF5190	0.82	+0.2
5,186,904	-		GFF5190	0.82	-1.0
5,186,910	+		GFF5190	0.84	-0.5
5,186,920	+		GFF5190	0.85	-1.0
5,186,926	+		GFF5190	0.87	-0.4
5,186,926	+		GFF5190	0.87	-0.4
5,186,926	+		GFF5190	0.87	-1.7
5,186,926	+		GFF5190	0.87	-1.9
5,186,928	+		GFF5190	0.87	-1.1
5,186,928	+		GFF5190	0.87	+1.2
5,186,934	-		GFF5190	0.88	-0.7
5,186,934	-		GFF5190	0.88	-0.3
5,186,936	+		GFF5190	0.89	-0.3
5,186,936	+		GFF5190	0.89	-1.3
5,186,936	+		GFF5190	0.89	-0.9
5,186,936	+		GFF5190	0.89	-0.3
5,186,936	-		GFF5190	0.89	-1.0
5,186,936	-		GFF5190	0.89	-0.3
5,186,936	-		GFF5190	0.89	+0.0
5,186,936	-		GFF5190	0.89	+0.6
5,186,937	-		GFF5190	0.89	-1.0
5,186,939	-		GFF5190	0.89	-0.2
5,186,939	-		GFF5190	0.89	-0.9
5,186,939	-		GFF5190	0.89	-0.2
5,186,939	-		GFF5190	0.89	-1.0
5,186,944	-				-0.2
5,186,944	-				-0.8
5,186,944	-				+0.2
5,186,944	-				-0.0
5,186,945	+				+0.1
5,186,953	-				-1.5
5,186,953	-				+1.7
5,186,963	+				-0.6
5,186,971	-				-0.2
5,186,971	-				-0.9
5,186,971	-				+0.0
5,186,986	-				-0.6
5,187,024	+				-1.2
5,187,032	-				-0.9
5,187,037	-				-1.1
5,187,057	+		GFF5191	0.10	+0.5
5,187,059	+		GFF5191	0.11	+0.1
5,187,059	+		GFF5191	0.11	-2.0
5,187,061	+		GFF5191	0.11	-0.1
5,187,062	+		GFF5191	0.11	-1.5
5,187,062	-		GFF5191	0.11	-1.3
5,187,067	-		GFF5191	0.12	-1.9
5,187,067	-		GFF5191	0.12	-1.7
5,187,074	-		GFF5191	0.13	-2.5
5,187,084	-		GFF5191	0.15	+0.6
5,187,088	-		GFF5191	0.15	+0.4
5,187,089	-		GFF5191	0.15	+0.6
5,187,090	+		GFF5191	0.16	-1.9
5,187,090	+		GFF5191	0.16	-0.1
5,187,091	-		GFF5191	0.16	+0.5
5,187,100	+		GFF5191	0.17	-0.9
5,187,100	+		GFF5191	0.17	-0.3
5,187,108	-		GFF5191	0.19	-0.7
5,187,108	-		GFF5191	0.19	+1.0
5,187,117	-		GFF5191	0.20	-0.6
5,187,119	+		GFF5191	0.20	-0.2
5,187,125	+		GFF5191	0.21	-0.8
5,187,129	+		GFF5191	0.22	+0.4
5,187,133	-		GFF5191	0.23	+0.3
5,187,133	-		GFF5191	0.23	-2.4
5,187,133	-		GFF5191	0.23	-1.2
5,187,133	-		GFF5191	0.23	-0.3
5,187,133	-		GFF5191	0.23	-2.2
5,187,139	+		GFF5191	0.24	+0.3
5,187,144	+		GFF5191	0.24	-0.1
5,187,145	+		GFF5191	0.24	+0.7
5,187,152	-		GFF5191	0.26	+0.3
5,187,152	-		GFF5191	0.26	+0.2
5,187,156	+		GFF5191	0.26	-0.0
5,187,156	+		GFF5191	0.26	+0.2
5,187,156	+		GFF5191	0.26	-2.0
5,187,156	+		GFF5191	0.26	-0.5
5,187,156	+		GFF5191	0.26	+1.1
5,187,156	+		GFF5191	0.26	+1.1
5,187,156	+		GFF5191	0.26	+0.3
5,187,156	+		GFF5191	0.26	-0.7
5,187,156	+		GFF5191	0.26	-1.7
5,187,156	+		GFF5191	0.26	-1.5
5,187,156	+		GFF5191	0.26	-1.1
5,187,156	+		GFF5191	0.26	-0.5
5,187,164	-		GFF5191	0.28	-0.6
5,187,164	-		GFF5191	0.28	-0.7
5,187,164	-		GFF5191	0.28	-0.0
5,187,164	-		GFF5191	0.28	-0.2
5,187,164	-		GFF5191	0.28	-0.6
5,187,164	-		GFF5191	0.28	-0.6
5,187,164	-		GFF5191	0.28	+1.0
5,187,164	-		GFF5191	0.28	+0.1
5,187,164	-		GFF5191	0.28	-1.7
5,187,164	-		GFF5191	0.28	+0.3
5,187,164	-		GFF5191	0.28	+0.7
5,187,164	-		GFF5191	0.28	-0.0
5,187,166	+		GFF5191	0.28	+0.9
5,187,174	-		GFF5191	0.29	-0.5
5,187,183	+		GFF5191	0.31	+0.3
5,187,186	+		GFF5191	0.31	-1.8
5,187,186	+		GFF5191	0.31	-1.3
5,187,214	+		GFF5191	0.36	-0.6
5,187,217	-		GFF5191	0.36	-0.4
5,187,227	-		GFF5191	0.38	-0.0
5,187,227	-		GFF5191	0.38	-1.5
5,187,227	-		GFF5191	0.38	-0.8
5,187,238	+		GFF5191	0.39	-1.6
5,187,244	-		GFF5191	0.40	-2.3
5,187,252	+		GFF5191	0.42	+1.7
5,187,298	+		GFF5191	0.49	-0.2
5,187,298	-		GFF5191	0.49	-1.0
5,187,306	+		GFF5191	0.50	+0.6
5,187,306	+		GFF5191	0.50	-0.0
5,187,306	+		GFF5191	0.50	-1.3
5,187,306	+		GFF5191	0.50	-0.3
5,187,314	-		GFF5191	0.52	-0.7
5,187,329	+		GFF5191	0.54	-0.1
5,187,329	-		GFF5191	0.54	-0.7
5,187,338	+		GFF5191	0.56	-0.5
5,187,343	+		GFF5191	0.56	-0.6
5,187,351	-		GFF5191	0.58	-1.2
5,187,351	-		GFF5191	0.58	+1.1
5,187,351	-		GFF5191	0.58	-0.8
5,187,365	+		GFF5191	0.60	-1.5
5,187,373	-		GFF5191	0.61	-0.0
5,187,373	-		GFF5191	0.61	+0.1
5,187,373	-		GFF5191	0.61	-1.7
5,187,373	-		GFF5191	0.61	-1.0
5,187,373	-		GFF5191	0.61	-1.2
5,187,375	+		GFF5191	0.62	-0.1
5,187,375	+		GFF5191	0.62	-0.0
5,187,375	+		GFF5191	0.62	+0.2
5,187,375	+		GFF5191	0.62	-1.8
5,187,375	+		GFF5191	0.62	-0.6
5,187,375	+		GFF5191	0.62	-1.0
5,187,375	+		GFF5191	0.62	+0.2
5,187,375	+		GFF5191	0.62	+0.2
5,187,375	+		GFF5191	0.62	-0.2
5,187,375	+		GFF5191	0.62	+0.4
5,187,375	+		GFF5191	0.62	-0.3
5,187,375	+		GFF5191	0.62	+0.6
5,187,375	+		GFF5191	0.62	-0.1
5,187,375	+		GFF5191	0.62	-0.9
5,187,375	+		GFF5191	0.62	-1.8
5,187,380	+		GFF5191	0.62	-2.5
5,187,380	+		GFF5191	0.62	-0.0
5,187,380	+		GFF5191	0.62	-0.8
5,187,380	+		GFF5191	0.62	+0.0
5,187,383	-		GFF5191	0.63	-1.1
5,187,383	-		GFF5191	0.63	-0.3
5,187,383	-		GFF5191	0.63	-1.3
5,187,383	-		GFF5191	0.63	-0.2
5,187,383	-		GFF5191	0.63	-0.0
5,187,383	-		GFF5191	0.63	-0.1
5,187,383	-		GFF5191	0.63	-0.3
5,187,383	-		GFF5191	0.63	+1.1
5,187,383	-		GFF5191	0.63	-2.1
5,187,383	-		GFF5191	0.63	-1.9
5,187,383	-		GFF5191	0.63	-2.3
5,187,383	-		GFF5191	0.63	-0.0
5,187,383	-		GFF5191	0.63	-0.6
5,187,383	-		GFF5191	0.63	+0.4
5,187,383	-		GFF5191	0.63	-1.3
5,187,383	-		GFF5191	0.63	+0.4
5,187,383	-		GFF5191	0.63	-1.4
5,187,383	-		GFF5191	0.63	+0.2
5,187,383	-		GFF5191	0.63	+0.4
5,187,383	-		GFF5191	0.63	-0.7
5,187,383	-		GFF5191	0.63	-1.9
5,187,383	-		GFF5191	0.63	-0.7
5,187,393	-		GFF5191	0.64	+0.3
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5,187,402	-		GFF5191	0.66	-1.9
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5,187,424	+		GFF5191	0.69	-2.3
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5,187,582	+				-0.9
5,187,590	-				-1.0
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5,187,912	+				-0.7
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