Strain Fitness in Sphingobium sp. HT1-2 around GFF5155

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,146,240	+		GFF5154	0.14	-1.9
5,146,248	-		GFF5154	0.15	-0.9
5,146,254	-		GFF5154	0.15	-1.2
5,146,254	-		GFF5154	0.15	-0.6
5,146,254	-		GFF5154	0.15	-1.6
5,146,254	-		GFF5154	0.15	-0.2
5,146,254	-		GFF5154	0.15	+0.5
5,146,274	-		GFF5154	0.17	-0.6
5,146,295	-		GFF5154	0.19	+0.1
5,146,300	-		GFF5154	0.20	+0.7
5,146,311	-		GFF5154	0.21	-0.8
5,146,319	+		GFF5154	0.22	-2.1
5,146,325	-		GFF5154	0.22	-0.4
5,146,326	+		GFF5154	0.22	-0.2
5,146,326	-		GFF5154	0.22	-0.3
5,146,326	-		GFF5154	0.22	+0.6
5,146,327	-		GFF5154	0.22	-0.5
5,146,334	-		GFF5154	0.23	+0.2
5,146,344	+		GFF5154	0.24	-1.5
5,146,344	+		GFF5154	0.24	-0.9
5,146,344	+		GFF5154	0.24	+0.3
5,146,344	+		GFF5154	0.24	-1.1
5,146,344	+		GFF5154	0.24	+0.2
5,146,345	-		GFF5154	0.24	-1.4
5,146,349	+		GFF5154	0.25	+1.4
5,146,349	+		GFF5154	0.25	-0.9
5,146,349	+		GFF5154	0.25	-0.6
5,146,352	-		GFF5154	0.25	-1.5
5,146,352	-		GFF5154	0.25	-3.2
5,146,352	-		GFF5154	0.25	-1.5
5,146,352	-		GFF5154	0.25	+0.4
5,146,352	-		GFF5154	0.25	-0.0
5,146,352	-		GFF5154	0.25	+1.5
5,146,352	-		GFF5154	0.25	+0.9
5,146,352	-		GFF5154	0.25	-1.1
5,146,361	+		GFF5154	0.26	-0.8
5,146,369	-		GFF5154	0.26	+0.2
5,146,369	-		GFF5154	0.26	-1.0
5,146,369	-		GFF5154	0.26	-1.2
5,146,385	+		GFF5154	0.28	+0.7
5,146,385	+		GFF5154	0.28	+0.3
5,146,385	+		GFF5154	0.28	-1.9
5,146,386	-		GFF5154	0.28	-0.3
5,146,393	-		GFF5154	0.29	+0.2
5,146,414	+		GFF5154	0.31	-0.8
5,146,423	+		GFF5154	0.32	+0.2
5,146,431	-		GFF5154	0.32	-1.8
5,146,431	-		GFF5154	0.32	+0.1
5,146,431	-		GFF5154	0.32	+0.7
5,146,471	+		GFF5154	0.36	-0.1
5,146,472	-		GFF5154	0.36	+1.2
5,146,492	-		GFF5154	0.38	-1.4
5,146,492	-		GFF5154	0.38	+0.9
5,146,508	-		GFF5154	0.40	-0.1
5,146,512	+		GFF5154	0.40	-0.1
5,146,512	+		GFF5154	0.40	-0.2
5,146,542	-		GFF5154	0.43	-0.5
5,146,542	-		GFF5154	0.43	-0.6
5,146,542	-		GFF5154	0.43	+0.1
5,146,555	+		GFF5154	0.44	-1.0
5,146,557	+		GFF5154	0.45	-1.7
5,146,557	+		GFF5154	0.45	-0.2
5,146,557	+		GFF5154	0.45	+0.9
5,146,563	+		GFF5154	0.45	+0.4
5,146,563	+		GFF5154	0.45	+0.9
5,146,565	-		GFF5154	0.45	-0.1
5,146,565	-		GFF5154	0.45	-0.5
5,146,565	-		GFF5154	0.45	-0.4
5,146,565	-		GFF5154	0.45	-1.5
5,146,565	-		GFF5154	0.45	-2.4
5,146,573	+		GFF5154	0.46	+0.8
5,146,573	+		GFF5154	0.46	-0.7
5,146,573	+		GFF5154	0.46	+1.1
5,146,573	+		GFF5154	0.46	-2.3
5,146,578	+		GFF5154	0.47	+0.2
5,146,581	-		GFF5154	0.47	-0.2
5,146,581	-		GFF5154	0.47	-2.4
5,146,581	-		GFF5154	0.47	-0.5
5,146,581	-		GFF5154	0.47	+0.4
5,146,584	+		GFF5154	0.47	+0.4
5,146,584	+		GFF5154	0.47	-0.9
5,146,618	-		GFF5154	0.50	-1.8
5,146,640	+		GFF5154	0.53	-2.3
5,146,640	+		GFF5154	0.53	-0.7
5,146,640	+		GFF5154	0.53	+0.4
5,146,640	+		GFF5154	0.53	-0.5
5,146,640	+		GFF5154	0.53	+0.2
5,146,640	+		GFF5154	0.53	+0.8
5,146,652	+		GFF5154	0.54	-0.8
5,146,680	-		GFF5154	0.56	-1.0
5,146,685	-		GFF5154	0.57	-1.4
5,146,696	+		GFF5154	0.58	-0.1
5,146,696	+		GFF5154	0.58	-2.6
5,146,704	+		GFF5154	0.59	-1.3
5,146,704	+		GFF5154	0.59	-1.5
5,146,709	+		GFF5154	0.59	-2.4
5,146,709	+		GFF5154	0.59	-0.1
5,146,709	+		GFF5154	0.59	-1.8
5,146,709	+		GFF5154	0.59	-1.2
5,146,724	+		GFF5154	0.61	+0.7
5,146,724	+		GFF5154	0.61	+0.4
5,146,724	+		GFF5154	0.61	+0.7
5,146,724	+		GFF5154	0.61	-0.7
5,146,724	+		GFF5154	0.61	-2.2
5,146,724	+		GFF5154	0.61	+0.1
5,146,726	-		GFF5154	0.61	-1.1
5,146,728	+		GFF5154	0.61	-1.8
5,146,732	-		GFF5154	0.61	+0.2
5,146,732	-		GFF5154	0.61	-1.5
5,146,732	-		GFF5154	0.61	-2.8
5,146,732	-		GFF5154	0.61	-0.7
5,146,732	-		GFF5154	0.61	-0.5
5,146,732	-		GFF5154	0.61	-1.2
5,146,732	-		GFF5154	0.61	-0.7
5,146,733	+		GFF5154	0.62	-0.7
5,146,736	-		GFF5154	0.62	-2.7
5,146,736	-		GFF5154	0.62	+0.8
5,146,763	-		GFF5154	0.64	+1.1
5,146,769	-		GFF5154	0.65	+0.3
5,146,770	-		GFF5154	0.65	-2.4
5,146,773	-		GFF5154	0.65	-0.1
5,146,826	-		GFF5154	0.71	-0.0
5,146,838	+		GFF5154	0.72	+0.4
5,146,849	+		GFF5154	0.73	-0.5
5,146,849	+		GFF5154	0.73	-0.3
5,146,849	+		GFF5154	0.73	+1.1
5,146,849	-		GFF5154	0.73	-0.3
5,146,863	+		GFF5154	0.74	-1.9
5,146,887	+		GFF5154	0.76	-0.1
5,146,897	+		GFF5154	0.77	+0.1
5,146,897	+		GFF5154	0.77	+0.8
5,146,897	+		GFF5154	0.77	+0.8
5,146,897	+		GFF5154	0.77	-1.2
5,146,897	+		GFF5154	0.77	-2.1
5,146,897	+		GFF5154	0.77	-0.5
5,146,897	+		GFF5154	0.77	-2.0
5,146,900	-		GFF5154	0.78	-0.5
5,146,905	-		GFF5154	0.78	+1.2
5,146,905	-		GFF5154	0.78	+0.0
5,146,905	-		GFF5154	0.78	-2.6
5,146,905	-		GFF5154	0.78	-1.1
5,146,905	-		GFF5154	0.78	+0.4
5,146,905	-		GFF5154	0.78	+0.9
5,146,905	-		GFF5154	0.78	+0.0
5,146,905	-		GFF5154	0.78	-1.6
5,146,905	-		GFF5154	0.78	-0.8
5,146,905	-		GFF5154	0.78	-2.1
5,146,905	-		GFF5154	0.78	+0.1
5,146,905	-		GFF5154	0.78	+0.1
5,146,905	-		GFF5154	0.78	-1.3
5,146,912	-		GFF5154	0.79	+0.9
5,146,928	+		GFF5154	0.80	+0.1
5,146,928	+		GFF5154	0.80	-1.6
5,146,933	+		GFF5154	0.81	-3.1
5,146,933	+		GFF5154	0.81	+0.2
5,146,933	+		GFF5154	0.81	+0.4
5,146,933	+		GFF5154	0.81	+0.1
5,146,933	+		GFF5154	0.81	-2.2
5,146,933	+		GFF5154	0.81	+1.5
5,146,933	+		GFF5154	0.81	-2.4
5,146,938	+		GFF5154	0.81	-0.1
5,146,938	+		GFF5154	0.81	-0.8
5,146,938	+		GFF5154	0.81	-2.8
5,146,938	+		GFF5154	0.81	-0.6
5,146,941	-		GFF5154	0.82	+1.4
5,146,941	-		GFF5154	0.82	-1.6
5,146,941	-		GFF5154	0.82	+0.4
5,146,941	-		GFF5154	0.82	-0.3
5,146,941	-		GFF5154	0.82	+0.5
5,146,941	-		GFF5154	0.82	+0.4
5,146,943	+		GFF5154	0.82	-1.6
5,146,943	+		GFF5154	0.82	+0.8
5,146,943	+		GFF5154	0.82	+1.0
5,146,943	+		GFF5154	0.82	+0.0
5,146,945	+		GFF5154	0.82	-1.6
5,146,946	-		GFF5154	0.82	+0.3
5,146,951	-		GFF5154	0.83	-1.4
5,146,951	-		GFF5154	0.83	-1.5
5,146,951	-		GFF5154	0.83	+0.7
5,146,951	-		GFF5154	0.83	+0.6
5,146,951	-		GFF5154	0.83	+0.1
5,146,953	-		GFF5154	0.83	+0.5
5,146,957	+		GFF5154	0.83	-0.4
5,146,974	-		GFF5154	0.85	-0.7
5,146,976	+		GFF5154	0.85	-1.0
5,146,976	+		GFF5154	0.85	+0.7
5,147,002	+		GFF5154	0.87	-0.8
5,147,002	+		GFF5154	0.87	-0.4
5,147,010	+		GFF5154	0.88	+0.2
5,147,010	+		GFF5154	0.88	-1.9
5,147,010	+		GFF5154	0.88	-0.9
5,147,010	+		GFF5154	0.88	-0.5
5,147,012	+		GFF5154	0.88	-0.7
5,147,018	-		GFF5154	0.89	-1.3
5,147,050	-				-0.1
5,147,051	-				-0.1
5,147,057	+				-2.1
5,147,060	-				+0.7
5,147,062	+				-1.1
5,147,065	-				-0.1
5,147,067	+				+1.3
5,147,090	-				+0.4
5,147,096	-				-0.1
5,147,101	+				+1.2
5,147,104	-				-2.4
5,147,125	+				-0.5
5,147,127	+				-0.5
5,147,135	-				+0.4
5,147,144	+				-1.8
5,147,161	-				+0.2
5,147,164	+				-1.1
5,147,170	-				-0.2
5,147,190	+				-0.9
5,147,198	-				-0.6
5,147,198	-				-0.5
5,147,198	-				-1.6
5,147,203	-				-0.3
5,147,203	-				-0.6
5,147,203	-				-0.3
5,147,208	-				-1.1
5,147,208	-				-0.1
5,147,208	-				-2.0
5,147,220	-				+0.5
5,147,220	-				-2.3
5,147,220	-				+0.8
5,147,230	+				-0.6
5,147,238	-				-0.9
5,147,279	+				+0.8
5,147,279	+				+0.6
5,147,279	+				-1.0
5,147,279	+				-0.4
5,147,279	+				-0.8
5,147,279	+				-0.3
5,147,280	+				-0.4
5,147,280	+				-1.4
5,147,282	-				-0.8
5,147,282	-				-1.0
5,147,284	+				+1.2
5,147,284	+				-1.8
5,147,286	+				-2.1
5,147,294	+				+0.1
5,147,306	+				-0.5
5,147,316	+				-1.2
5,147,316	+				-0.2
5,147,334	-				-0.5
5,147,347	+				+0.5
5,147,354	+				+0.5
5,147,354	+				-1.2
5,147,362	-				-0.4
5,147,362	-				-0.7
5,147,362	-				+1.0
5,147,382	+				-1.8
5,147,382	+				-1.6
5,147,382	+				+0.2
5,147,393	+		GFF5155	0.11	+0.5
5,147,419	-		GFF5155	0.12	-0.9
5,147,419	-		GFF5155	0.12	-1.8
5,147,426	-		GFF5155	0.13	-3.2
5,147,426	-		GFF5155	0.13	+0.4
5,147,426	-		GFF5155	0.13	-2.1
5,147,426	-		GFF5155	0.13	-1.0
5,147,426	-		GFF5155	0.13	-0.8
5,147,490	-		GFF5155	0.17	+0.2
5,147,568	+		GFF5155	0.23	-0.5
5,147,568	+		GFF5155	0.23	-1.8
5,147,568	+		GFF5155	0.23	+0.5
5,147,568	+		GFF5155	0.23	-1.2
5,147,592	+		GFF5155	0.24	-2.5
5,147,604	+		GFF5155	0.25	-0.8
5,147,609	+		GFF5155	0.26	-1.4
5,147,620	+		GFF5155	0.26	-0.2
5,147,623	-		GFF5155	0.26	+0.4
5,147,629	-		GFF5155	0.27	-0.7
5,147,631	+		GFF5155	0.27	+0.6
5,147,633	+		GFF5155	0.27	-0.1
5,147,648	-		GFF5155	0.28	-0.1
5,147,648	-		GFF5155	0.28	+0.3
5,147,648	-		GFF5155	0.28	-0.4
5,147,685	+		GFF5155	0.31	-1.2
5,147,685	+		GFF5155	0.31	-1.3
5,147,685	+		GFF5155	0.31	-1.2
5,147,685	+		GFF5155	0.31	+1.1
5,147,715	+		GFF5155	0.33	-0.6
5,147,723	-		GFF5155	0.33	-1.2
5,147,723	-		GFF5155	0.33	+0.5
5,147,725	-		GFF5155	0.34	+0.4
5,147,736	+		GFF5155	0.34	-0.8
5,147,736	+		GFF5155	0.34	+0.4
5,147,744	-		GFF5155	0.35	+1.4
5,147,744	-		GFF5155	0.35	-1.1
5,147,744	-		GFF5155	0.35	+0.9
5,147,744	-		GFF5155	0.35	-0.6
5,147,759	+		GFF5155	0.36	-1.9
5,147,760	+		GFF5155	0.36	-1.6
5,147,762	+		GFF5155	0.36	-1.0
5,147,770	+		GFF5155	0.37	+0.1
5,147,778	-		GFF5155	0.37	+0.5
5,147,811	+		GFF5155	0.39	-2.4
5,147,811	+		GFF5155	0.39	+1.4
5,147,811	+		GFF5155	0.39	-0.8
5,147,811	+		GFF5155	0.39	-1.2
5,147,811	+		GFF5155	0.39	-0.6
5,147,815	+		GFF5155	0.40	-2.1
5,147,819	-		GFF5155	0.40	+0.3
5,147,819	-		GFF5155	0.40	-2.5
5,147,819	-		GFF5155	0.40	+0.8
5,147,819	-		GFF5155	0.40	-2.0
5,147,819	-		GFF5155	0.40	+0.7
5,147,852	+		GFF5155	0.42	-1.8
5,147,857	+		GFF5155	0.43	-1.7
5,147,860	-		GFF5155	0.43	+0.6
5,147,865	+		GFF5155	0.43	-0.7
5,147,871	+		GFF5155	0.44	-1.6
5,147,871	+		GFF5155	0.44	+0.8
5,147,879	-		GFF5155	0.44	-0.8
5,147,901	-		GFF5155	0.46	+1.0
5,147,914	-		GFF5155	0.47	+0.9
5,147,914	-		GFF5155	0.47	-1.6
5,147,934	+		GFF5155	0.48	-1.0
5,147,944	+		GFF5155	0.49	+0.4
5,147,952	-		GFF5155	0.49	-0.9
5,147,997	+		GFF5155	0.52	-1.3
5,147,997	+		GFF5155	0.52	+0.0
5,147,997	+		GFF5155	0.52	-1.1
5,147,997	+		GFF5155	0.52	+0.2
5,147,997	+		GFF5155	0.52	-0.5
5,147,997	+		GFF5155	0.52	+0.0
5,148,005	-		GFF5155	0.53	-0.1
5,148,005	-		GFF5155	0.53	-1.2
5,148,005	-		GFF5155	0.53	-2.1
5,148,005	-		GFF5155	0.53	-0.6
5,148,005	-		GFF5155	0.53	-0.9
5,148,029	+		GFF5155	0.55	-0.1
5,148,030	+		GFF5155	0.55	-1.2
5,148,030	+		GFF5155	0.55	-0.2
5,148,088	+		GFF5155	0.59	+1.5
5,148,093	+		GFF5155	0.59	-0.8
5,148,093	+		GFF5155	0.59	-0.9
5,148,097	+		GFF5155	0.59	-0.3
5,148,101	-		GFF5155	0.60	-2.3
5,148,101	-		GFF5155	0.60	-0.2
5,148,101	-		GFF5155	0.60	+0.6
5,148,101	-		GFF5155	0.60	+0.4
5,148,101	-		GFF5155	0.60	+0.4
5,148,101	-		GFF5155	0.60	-0.3
5,148,103	-		GFF5155	0.60	-1.7
5,148,105	-		GFF5155	0.60	+0.4
5,148,130	+		GFF5155	0.62	-0.4
5,148,132	-		GFF5155	0.62	+1.1
5,148,137	-		GFF5155	0.62	-0.8
5,148,151	+		GFF5155	0.63	-0.1
5,148,152	-		GFF5155	0.63	+0.4
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5,148,196	-		GFF5155	0.66	+0.6
5,148,196	-		GFF5155	0.66	-2.1
5,148,247	+		GFF5155	0.70	-0.3
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5,148,261	+		GFF5155	0.71	-2.1
5,148,291	+		GFF5155	0.73	-1.8
5,148,301	+		GFF5155	0.73	-1.6
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5,148,385	+		GFF5155	0.79	-1.8
5,148,388	-		GFF5155	0.79	+0.1
5,148,397	-		GFF5155	0.80	-2.2
5,148,399	+		GFF5155	0.80	-1.4
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5,148,409	-		GFF5155	0.81	-0.7
5,148,414	-		GFF5155	0.81	+0.3
5,148,414	-		GFF5155	0.81	-0.3
5,148,415	+		GFF5155	0.81	-0.9
5,148,430	-		GFF5155	0.82	-1.2
5,148,445	+		GFF5155	0.83	+0.1
5,148,445	+		GFF5155	0.83	+0.1
5,148,454	-		GFF5155	0.84	-0.9
5,148,454	-		GFF5155	0.84	-2.4
5,148,454	-		GFF5155	0.84	-2.8
5,148,470	+		GFF5155	0.85	-2.1
5,148,499	-		GFF5155	0.87	-0.0
5,148,501	-		GFF5155	0.87	+0.4
5,148,551	+				+0.1
5,148,569	-				-0.8
5,148,580	-				-3.4
5,148,580	-				-0.2
5,148,580	-				-0.9
5,148,585	-				+0.7
5,148,585	-				+0.7
5,148,627	+				+1.1
5,148,652	+				+0.8
5,148,658	+				-0.4
5,148,711	+				-0.2
5,148,711	+				+1.3
5,148,711	+				-1.5
5,148,711	+				-1.1
5,148,711	+				-0.2
5,148,719	-				-0.5
5,148,719	-				+0.5
5,148,719	-				-0.1
5,148,719	-				-0.6
5,148,719	-				+0.0
5,148,724	+				-2.0
5,148,756	+				-1.0
5,148,761	+				-1.0
5,148,761	+				+0.5
5,148,761	+				-1.4
5,148,761	+				+0.5
5,148,769	-				+0.4
5,148,769	-				+0.0
5,148,769	-				+0.6
5,148,783	-				+0.4
5,148,792	+		GFF5156	0.11	+0.8
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5,148,800	-		GFF5156	0.14	-1.0
5,148,800	-		GFF5156	0.14	-0.5
5,148,873	+		GFF5156	0.42	-0.8
5,148,888	+		GFF5156	0.47	-0.3
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5,148,888	+		GFF5156	0.47	-0.9
5,148,888	+		GFF5156	0.47	-0.1
5,148,888	+		GFF5156	0.47	-0.5
5,148,896	-		GFF5156	0.50	-2.1
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5,148,898	+		GFF5156	0.51	+0.8
5,148,906	-		GFF5156	0.54	-0.5
5,148,945	+		GFF5156	0.69	-1.2
5,148,968	+		GFF5156	0.78	+0.2
5,148,979	+		GFF5156	0.82	-1.6
5,148,979	+		GFF5156	0.82	+0.2
5,148,979	+		GFF5156	0.82	+0.8
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5,149,021	+				-0.8
5,149,021	+				+1.2
5,149,026	+				+0.7
5,149,027	+				+0.6
5,149,027	+				+1.1
5,149,029	-				-0.6
5,149,029	-				+0.6
5,149,031	+				-1.6
5,149,042	+				+1.2
5,149,042	+				-0.6
5,149,045	-				-1.6
5,149,047	+				-2.4
5,149,047	+				-1.5
5,149,055	-				+0.4
5,149,057	+				-1.4
5,149,070	+				+0.9
5,149,070	-				-0.2
5,149,336	+				-1.6
5,149,336	+				-0.5
5,149,336	+				-1.6
5,149,336	+				-0.1
5,149,341	+				-1.8
5,149,341	+				+2.2
5,149,341	+				-0.0
5,149,341	+				+0.3
5,149,341	+				-0.3
5,149,344	+				-1.9
5,149,346	+				+0.1
5,149,354	+				+0.8
5,149,380	+				-0.1
5,149,386	+				-0.7
5,149,388	-				-0.1
5,149,388	-				+0.6
5,149,394	-				+0.1
5,149,403	-				+0.8
5,149,411	-				-2.4
5,149,411	-				+0.8
5,149,426	+				+0.5
5,149,431	-				-1.1
5,149,434	-				+1.3
5,149,446	+				-1.5
5,149,454	-				-0.1
5,149,456	-				-1.2
5,149,456	-				-2.1
5,149,475	-				-0.5
5,149,482	-				+0.5
5,149,500	-				-0.3
5,149,510	-				-1.8
5,149,533	+				-0.8
5,149,533	+				+0.5
5,149,535	+				-2.0
5,149,548	-				-0.2
5,149,549	-				+0.1
5,149,554	+				+1.4
5,149,554	+				+1.5
5,149,562	-				+0.2
5,149,566	-				-0.4
5,149,570	-				-0.6
5,149,572	+				+0.3
5,149,594	-				-1.8
5,149,594	-				+1.3
5,149,598	-				-1.8
5,149,604	-				+0.6
5,149,609	+				-2.2
5,149,619	+				-1.2
5,149,619	-				-1.0
5,149,628	-				-1.8
5,149,628	-				-0.4
5,149,645	-				-1.4
5,149,649	+				-1.1
5,149,657	-				-1.9
5,149,657	-				-0.1
5,149,657	-				+0.5
5,149,676	+				+0.4
5,149,676	+				-1.6
5,149,676	+				+0.0
5,149,676	+				-1.1
5,149,683	+				-1.5
5,149,683	+				-0.7
5,149,683	+				-0.8
5,149,683	+				+0.1
5,149,683	+				+0.2
5,149,683	+				+1.5
5,149,683	+				-1.1
5,149,684	-				+0.3