Strain Fitness in Sphingobium sp. HT1-2 around GFF5093

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,081,373	-		GFF5090	0.60	+1.0
5,081,383	-		GFF5090	0.61	-2.4
5,081,388	-		GFF5090	0.62	-0.5
5,081,438	+		GFF5090	0.69	-0.6
5,081,468	-		GFF5090	0.73	-1.0
5,081,490	-		GFF5090	0.75	-1.3
5,081,491	-		GFF5090	0.76	+0.1
5,081,497	-		GFF5090	0.76	-2.5
5,081,514	-		GFF5090	0.79	-0.6
5,081,523	+		GFF5090	0.80	-0.5
5,081,523	+		GFF5090	0.80	-0.3
5,081,559	+		GFF5090	0.85	+0.4
5,081,577	-		GFF5090	0.87	-0.7
5,081,580	+		GFF5090	0.87	-0.2
5,081,588	-		GFF5090	0.88	-1.1
5,081,588	-		GFF5090	0.88	-1.8
5,081,598	-		GFF5090	0.90	-0.2
5,081,633	+				+0.3
5,081,641	-				-2.3
5,081,641	-				-0.9
5,081,697	-				-0.0
5,081,697	-				+0.2
5,081,702	+				-0.5
5,081,710	-				-0.6
5,081,710	-				-0.5
5,081,710	-				+0.2
5,081,724	-		GFF5091	0.11	-0.6
5,081,785	-		GFF5091	0.23	+0.1
5,081,816	-		GFF5091	0.29	-0.6
5,081,839	+		GFF5091	0.34	-0.7
5,081,839	+		GFF5091	0.34	-1.6
5,081,899	+		GFF5091	0.46	-2.6
5,081,904	+		GFF5091	0.47	-0.5
5,081,907	-		GFF5091	0.47	-1.3
5,081,930	-		GFF5091	0.52	+0.3
5,081,940	+		GFF5091	0.54	+0.1
5,081,942	+		GFF5091	0.54	+0.4
5,081,956	+		GFF5091	0.57	-0.5
5,081,956	+		GFF5091	0.57	-1.5
5,081,956	+		GFF5091	0.57	-0.5
5,081,964	-		GFF5091	0.58	-0.5
5,081,969	-		GFF5091	0.59	-0.4
5,081,976	+		GFF5091	0.61	-0.0
5,081,977	+		GFF5091	0.61	-0.1
5,081,977	+		GFF5091	0.61	+1.3
5,081,977	+		GFF5091	0.61	-0.0
5,082,031	+		GFF5091	0.72	-0.5
5,082,031	+		GFF5091	0.72	-0.2
5,082,031	+		GFF5091	0.72	+0.4
5,082,031	+		GFF5091	0.72	-0.9
5,082,031	+		GFF5091	0.72	-1.1
5,082,031	+		GFF5091	0.72	-2.2
5,082,031	+		GFF5091	0.72	+0.2
5,082,031	+		GFF5091	0.72	+0.2
5,082,031	+		GFF5091	0.72	-0.0
5,082,036	+		GFF5091	0.73	-0.6
5,082,074	-		GFF5091	0.80	-1.3
5,082,079	-		GFF5091	0.81	-0.7
5,082,079	-		GFF5091	0.81	-0.9
5,082,084	-		GFF5091	0.82	+0.1
5,082,085	-		GFF5091	0.83	-0.6
5,082,127	-				-0.9
5,082,212	-		GFF5092	0.18	+0.1
5,082,291	-		GFF5092	0.68	-1.7
5,082,295	+		GFF5092	0.70	+0.4
5,082,298	-		GFF5092	0.72	-1.8
5,082,300	+		GFF5092	0.74	-0.5
5,082,303	-		GFF5092	0.75	+1.1
5,082,322	+		GFF5092	0.87	-0.3
5,082,322	-		GFF5092	0.87	-0.1
5,082,322	-		GFF5092	0.87	-1.2
5,082,374	-				+0.2
5,082,401	-		GFF5093	0.15	-1.3
5,082,417	+		GFF5093	0.23	-0.6
5,082,425	-		GFF5093	0.27	-1.2
5,082,425	-		GFF5093	0.27	-1.2
5,082,425	-		GFF5093	0.27	-1.4
5,082,425	-		GFF5093	0.27	+0.2
5,082,439	+		GFF5093	0.34	-0.0
5,082,476	+		GFF5093	0.52	-1.0
5,082,509	-		GFF5093	0.68	-3.0
5,082,548	+		GFF5093	0.87	-1.5
5,082,608	-				+0.0
5,082,622	-				-1.3
5,082,645	-				-1.6
5,082,645	-				+0.7
5,082,654	-				-0.1
5,082,693	+		GFF5094	0.13	-0.5
5,082,693	+		GFF5094	0.13	+0.3
5,082,701	-		GFF5094	0.15	-2.2
5,082,722	+		GFF5094	0.21	+0.0
5,082,722	+		GFF5094	0.21	+0.9
5,082,722	+		GFF5094	0.21	-1.0
5,082,722	+		GFF5094	0.21	-0.3
5,082,722	+		GFF5094	0.21	+1.2
5,082,722	+		GFF5094	0.21	+0.3
5,082,722	+		GFF5094	0.21	-0.4
5,082,730	-		GFF5094	0.23	+0.2
5,082,730	-		GFF5094	0.23	-1.1
5,082,775	+		GFF5094	0.36	-3.4
5,082,779	-		GFF5094	0.37	+0.8
5,082,805	-		GFF5094	0.44	-1.0
5,082,812	+		GFF5094	0.46	-0.6
5,082,830	+		GFF5094	0.51	-0.9
5,082,830	+		GFF5094	0.51	+0.3
5,082,830	+		GFF5094	0.51	-0.7
5,082,830	+		GFF5094	0.51	-0.7
5,082,830	+		GFF5094	0.51	-1.2
5,082,830	+		GFF5094	0.51	+0.0
5,082,830	+		GFF5094	0.51	-0.6
5,082,830	+		GFF5094	0.51	-0.5
5,082,830	+		GFF5094	0.51	-1.5
5,082,830	+		GFF5094	0.51	-1.3
5,082,830	+		GFF5094	0.51	-0.6
5,082,838	-		GFF5094	0.53	+0.3
5,082,838	-		GFF5094	0.53	+0.4
5,082,838	-		GFF5094	0.53	+0.1
5,082,838	-		GFF5094	0.53	-0.5
5,082,838	-		GFF5094	0.53	-0.1
5,082,838	-		GFF5094	0.53	-1.1
5,082,838	-		GFF5094	0.53	+0.4
5,082,838	-		GFF5094	0.53	-1.5
5,082,892	+		GFF5094	0.68	+0.3
5,082,928	-		GFF5094	0.78	-0.6
5,082,933	-		GFF5094	0.80	+0.5
5,082,954	+		GFF5094	0.86	-0.8
5,083,000	+				-0.1
5,083,011	+				-0.4
5,083,016	+				-0.4
5,083,016	+				-1.3
5,083,024	-				-2.0
5,083,024	-				+0.0
5,083,024	-				+0.2
5,083,053	+				-1.6
5,083,053	+				-1.3
5,083,079	+		GFF5095	0.10	-0.3
5,083,079	+		GFF5095	0.10	-1.3
5,083,081	+		GFF5095	0.10	+1.2
5,083,087	-		GFF5095	0.12	-0.8
5,083,105	+		GFF5095	0.15	-1.1
5,083,105	+		GFF5095	0.15	-0.4
5,083,126	-		GFF5095	0.19	+0.7
5,083,148	+		GFF5095	0.24	-0.9
5,083,156	-		GFF5095	0.25	+0.0
5,083,169	-		GFF5095	0.28	-0.8
5,083,187	-		GFF5095	0.31	-0.0
5,083,202	-		GFF5095	0.34	-0.5
5,083,216	+		GFF5095	0.37	-0.4
5,083,218	-		GFF5095	0.37	-0.3
5,083,241	+		GFF5095	0.42	-1.0
5,083,246	+		GFF5095	0.43	-0.2
5,083,262	+		GFF5095	0.46	-1.7
5,083,289	+		GFF5095	0.51	-0.3
5,083,294	+		GFF5095	0.52	+0.7
5,083,299	+		GFF5095	0.53	-0.5
5,083,310	-		GFF5095	0.55	+0.1
5,083,313	+		GFF5095	0.56	-1.0
5,083,350	+		GFF5095	0.63	-2.3
5,083,378	+		GFF5095	0.69	-2.0
5,083,384	+		GFF5095	0.70	-0.4
5,083,391	+		GFF5095	0.71	-0.3
5,083,391	+		GFF5095	0.71	-0.7
5,083,391	+		GFF5095	0.71	+0.5
5,083,391	+		GFF5095	0.71	-0.6
5,083,391	+		GFF5095	0.71	-1.5
5,083,392	+		GFF5095	0.71	-0.2
5,083,392	+		GFF5095	0.71	-1.2
5,083,392	+		GFF5095	0.71	+1.1
5,083,392	+		GFF5095	0.71	-0.4
5,083,394	-		GFF5095	0.72	-0.9
5,083,399	-		GFF5095	0.73	-0.2
5,083,399	-		GFF5095	0.73	-1.0
5,083,400	-		GFF5095	0.73	-0.4
5,083,400	-		GFF5095	0.73	-1.5
5,083,418	+		GFF5095	0.76	-1.8
5,083,418	+		GFF5095	0.76	-1.5
5,083,426	-		GFF5095	0.78	-2.6
5,083,495	+				+0.1
5,083,495	+				-1.2
5,083,503	-				-0.2
5,083,503	-				-1.0
5,083,503	-				-0.3
5,083,503	-				-0.4
5,083,527	+				-0.9
5,083,535	-				-1.7
5,083,535	-				-2.5
5,083,535	-				+0.1
5,083,535	-				-2.0
5,083,539	+				-1.2
5,083,539	+				-0.0
5,083,545	-				-1.1
5,083,546	+				+0.7
5,083,547	-				-2.1
5,083,547	-				-0.6
5,083,547	-				-1.7
5,083,552	+				-1.1
5,083,554	-				-0.8
5,083,562	+				-1.1
5,083,562	+				+1.2
5,083,570	-				-2.0