Strain Fitness in Sphingobium sp. HT1-2 around GFF5056

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,051,499	+				+0.6
5,051,499	+				-0.6
5,051,499	+				+0.6
5,051,530	-				-2.0
5,051,547	+				-2.0
5,051,547	+				-1.8
5,051,547	+				-1.5
5,051,547	+				+1.3
5,051,547	+				-3.4
5,051,556	-				-2.2
5,051,556	-				-2.6
5,051,707	+				-2.9
5,051,712	+				-2.0
5,051,712	+				-2.4
5,051,720	-				-2.2
5,051,720	-				-2.3
5,051,720	-				-1.0
5,051,730	-				-2.4
5,051,740	-				-0.5
5,051,740	-				-2.0
5,051,740	-				-0.3
5,051,832	+		GFF5056	0.11	-1.7
5,051,896	+		GFF5056	0.13	-2.2
5,051,915	+		GFF5056	0.14	-0.2
5,051,919	+		GFF5056	0.14	+0.3
5,051,925	+		GFF5056	0.14	-2.7
5,051,934	+		GFF5056	0.15	-0.9
5,051,965	-		GFF5056	0.16	-1.2
5,051,974	+		GFF5056	0.16	-0.5
5,051,982	-		GFF5056	0.16	-0.4
5,051,982	-		GFF5056	0.16	-2.6
5,052,023	-		GFF5056	0.18	-0.4
5,052,024	-		GFF5056	0.18	-2.2
5,052,024	-		GFF5056	0.18	+0.1
5,052,032	-		GFF5056	0.18	-2.0
5,052,034	+		GFF5056	0.18	+0.3
5,052,034	+		GFF5056	0.18	-2.1
5,052,099	-		GFF5056	0.21	-2.1
5,052,140	+		GFF5056	0.22	-1.8
5,052,152	+		GFF5056	0.23	+0.3
5,052,152	+		GFF5056	0.23	-2.8
5,052,152	+		GFF5056	0.23	-1.6
5,052,152	+		GFF5056	0.23	+1.2
5,052,152	+		GFF5056	0.23	-2.6
5,052,160	-		GFF5056	0.23	-1.3
5,052,160	-		GFF5056	0.23	-2.6
5,052,160	-		GFF5056	0.23	-0.1
5,052,160	-		GFF5056	0.23	+0.8
5,052,160	-		GFF5056	0.23	-0.3
5,052,225	-		GFF5056	0.25	+0.6
5,052,238	-		GFF5056	0.26	-1.5
5,052,238	-		GFF5056	0.26	-2.7
5,052,240	+		GFF5056	0.26	-2.9
5,052,275	+		GFF5056	0.27	+0.5
5,052,315	-		GFF5056	0.29	-0.9
5,052,346	+		GFF5056	0.30	-3.1
5,052,346	+		GFF5056	0.30	-0.4
5,052,359	+		GFF5056	0.30	+0.3
5,052,359	+		GFF5056	0.30	-2.5
5,052,378	+		GFF5056	0.31	-2.5
5,052,386	-		GFF5056	0.31	-0.5
5,052,391	-		GFF5056	0.31	-3.0
5,052,396	+		GFF5056	0.32	+0.2
5,052,415	+		GFF5056	0.32	+0.4
5,052,525	+		GFF5056	0.36	+0.5
5,052,528	+		GFF5056	0.37	+0.5
5,052,533	-		GFF5056	0.37	-0.2
5,052,536	-		GFF5056	0.37	-2.8
5,052,580	+		GFF5056	0.38	+1.3
5,052,580	+		GFF5056	0.38	-2.3
5,052,580	+		GFF5056	0.38	+0.1
5,052,580	+		GFF5056	0.38	-0.3
5,052,580	+		GFF5056	0.38	-2.0
5,052,580	+		GFF5056	0.38	+0.6
5,052,580	+		GFF5056	0.38	-2.9
5,052,580	+		GFF5056	0.38	-1.7
5,052,580	+		GFF5056	0.38	-0.1
5,052,580	+		GFF5056	0.38	+0.5
5,052,580	+		GFF5056	0.38	-0.1
5,052,580	+		GFF5056	0.38	-2.0
5,052,588	-		GFF5056	0.39	-2.9
5,052,588	-		GFF5056	0.39	-0.0
5,052,626	+		GFF5056	0.40	-2.6
5,052,637	+		GFF5056	0.41	-2.0
5,052,691	-		GFF5056	0.43	-2.2
5,052,740	-		GFF5056	0.44	-2.4
5,052,745	-		GFF5056	0.45	+1.5
5,052,752	+		GFF5056	0.45	+0.9
5,052,784	-		GFF5056	0.46	-0.1
5,052,784	-		GFF5056	0.46	-2.0
5,052,807	+		GFF5056	0.47	+0.5
5,052,807	+		GFF5056	0.47	-3.0
5,052,836	+		GFF5056	0.48	-0.3
5,052,844	-		GFF5056	0.48	+0.9
5,052,857	-		GFF5056	0.49	-1.6
5,052,909	+		GFF5056	0.51	+0.4
5,052,933	-		GFF5056	0.52	-2.3
5,052,954	+		GFF5056	0.52	-2.9
5,052,962	-		GFF5056	0.53	-3.2
5,052,975	-		GFF5056	0.53	-2.1
5,052,975	-		GFF5056	0.53	-3.0
5,053,023	-		GFF5056	0.55	-1.7
5,053,108	+		GFF5056	0.58	-0.0
5,053,108	+		GFF5056	0.58	-2.5
5,053,116	-		GFF5056	0.58	-1.9
5,053,116	-		GFF5056	0.58	-0.9
5,053,116	-		GFF5056	0.58	-2.2
5,053,126	+		GFF5056	0.59	-2.5
5,053,126	+		GFF5056	0.59	-1.2
5,053,144	+		GFF5056	0.59	-4.0
5,053,144	+		GFF5056	0.59	-2.4
5,053,144	-		GFF5056	0.59	-2.2
5,053,152	-		GFF5056	0.60	-4.4
5,053,152	-		GFF5056	0.60	-2.5
5,053,158	+		GFF5056	0.60	-2.7
5,053,158	+		GFF5056	0.60	-0.3
5,053,168	+		GFF5056	0.60	-1.3
5,053,211	+		GFF5056	0.62	-2.4
5,053,241	-		GFF5056	0.63	-0.6
5,053,264	-		GFF5056	0.64	+1.0
5,053,265	-		GFF5056	0.64	-1.8
5,053,271	-		GFF5056	0.64	+1.2
5,053,273	+		GFF5056	0.64	-2.6
5,053,273	+		GFF5056	0.64	+0.5
5,053,307	+		GFF5056	0.65	+0.9
5,053,371	+		GFF5056	0.68	-3.0
5,053,378	+		GFF5056	0.68	-1.5
5,053,378	+		GFF5056	0.68	-1.9
5,053,420	-		GFF5056	0.70	+0.3
5,053,420	-		GFF5056	0.70	-1.6
5,053,431	+		GFF5056	0.70	-1.2
5,053,431	+		GFF5056	0.70	+0.5
5,053,431	+		GFF5056	0.70	-3.0
5,053,431	+		GFF5056	0.70	-2.2
5,053,431	+		GFF5056	0.70	-1.4
5,053,431	+		GFF5056	0.70	-1.4
5,053,431	+		GFF5056	0.70	-2.5
5,053,431	+		GFF5056	0.70	+0.7
5,053,431	+		GFF5056	0.70	-2.2
5,053,433	+		GFF5056	0.70	+1.3
5,053,494	-		GFF5056	0.72	+0.4
5,053,507	-		GFF5056	0.73	-1.0
5,053,517	-		GFF5056	0.73	-1.5
5,053,517	-		GFF5056	0.73	-0.5
5,053,517	-		GFF5056	0.73	-1.2
5,053,517	-		GFF5056	0.73	+1.0
5,053,530	-		GFF5056	0.74	+0.5
5,053,535	-		GFF5056	0.74	+1.0
5,053,622	-		GFF5056	0.77	-1.0
5,053,632	-		GFF5056	0.77	+0.3
5,053,763	+		GFF5056	0.82	-2.2
5,053,763	+		GFF5056	0.82	-1.4
5,053,763	+		GFF5056	0.82	+1.1
5,053,765	+		GFF5056	0.82	-1.6
5,053,770	+		GFF5056	0.83	-3.0
5,053,771	-		GFF5056	0.83	-3.0
5,053,771	-		GFF5056	0.83	-3.3
5,053,803	+		GFF5056	0.84	-1.2
5,053,803	+		GFF5056	0.84	+1.4
5,053,808	+		GFF5056	0.84	+0.5
5,053,808	+		GFF5056	0.84	-2.0
5,053,808	+		GFF5056	0.84	+1.1
5,053,809	+		GFF5056	0.84	-0.0
5,053,811	-		GFF5056	0.84	-3.4
5,053,816	-		GFF5056	0.84	-0.9
5,053,816	-		GFF5056	0.84	-2.8
5,053,816	-		GFF5056	0.84	+0.3
5,053,816	-		GFF5056	0.84	-2.1
5,053,816	-		GFF5056	0.84	+0.1
5,053,832	+		GFF5056	0.85	-1.4
5,053,850	-		GFF5056	0.85	-0.4
5,053,865	-		GFF5056	0.86	-0.5
5,053,867	+		GFF5056	0.86	-2.7
5,053,867	+		GFF5056	0.86	-3.6
5,053,867	+		GFF5056	0.86	-0.5
5,053,867	+		GFF5056	0.86	+0.1
5,053,867	+		GFF5056	0.86	-2.0
5,053,869	-		GFF5056	0.86	-0.3
5,053,870	-		GFF5056	0.86	+0.9
5,053,870	-		GFF5056	0.86	-2.9
5,053,870	-		GFF5056	0.86	+0.6
5,053,874	-		GFF5056	0.86	-2.0
5,053,875	-		GFF5056	0.86	+0.3
5,053,875	-		GFF5056	0.86	-1.7
5,053,875	-		GFF5056	0.86	-0.0
5,053,875	-		GFF5056	0.86	-1.6
5,053,894	+		GFF5056	0.87	-0.1
5,053,948	-		GFF5056	0.89	+0.4
5,054,017	+				+0.0
5,054,017	+				-0.6
5,054,053	-				+0.5
5,054,076	-				+0.3
5,054,249	-				-0.4
5,054,280	+				+1.3
5,054,280	+				-0.2
5,054,290	+				+0.1
5,054,290	+				+0.8
5,054,298	-				+0.1
5,054,298	-				+1.1
5,054,358	-				+0.8
5,054,358	-				+0.3
5,054,370	+				-0.1
5,054,389	-				+0.9
5,054,407	+				-0.0
5,054,415	-				-0.9
5,054,512	-				+0.7
5,054,600	-				-0.3
5,054,611	+				+0.9
5,054,611	+				+1.0
5,054,641	+				+0.9
5,054,674	+				+0.7
5,054,728	+		GFF5057	0.10	+0.6
5,054,736	-		GFF5057	0.11	+0.9
5,054,736	-		GFF5057	0.11	+1.5
5,054,736	-		GFF5057	0.11	+0.5
5,054,736	-		GFF5057	0.11	+0.6
5,054,741	-		GFF5057	0.12	+1.2
5,054,745	-		GFF5057	0.12	-1.1
5,054,779	+		GFF5057	0.16	+1.3
5,054,838	+		GFF5057	0.23	+2.1
5,054,868	+		GFF5057	0.27	-0.6
5,054,883	+		GFF5057	0.29	+2.6
5,054,883	+		GFF5057	0.29	+1.1
5,054,895	+		GFF5057	0.30	-0.3
5,054,906	+		GFF5057	0.31	+0.0
5,054,906	+		GFF5057	0.31	+1.0
5,054,909	-		GFF5057	0.32	+2.3
5,054,914	-		GFF5057	0.32	+0.6
5,054,915	-		GFF5057	0.32	-0.7
5,054,916	-		GFF5057	0.33	-1.3
5,054,956	+		GFF5057	0.37	-0.8
5,054,976	+		GFF5057	0.40	+0.5
5,054,976	+		GFF5057	0.40	-0.3
5,054,976	+		GFF5057	0.40	+0.4
5,055,039	+		GFF5057	0.47	-1.4
5,055,047	+		GFF5057	0.48	+0.0
5,055,055	-		GFF5057	0.49	+1.4
5,055,087	-		GFF5057	0.53	+0.4
5,055,099	-		GFF5057	0.54	+0.2
5,055,108	+		GFF5057	0.55	-1.0
5,055,146	-		GFF5057	0.60	+0.8
5,055,184	-		GFF5057	0.64	+0.4
5,055,194	-		GFF5057	0.66	+0.0
5,055,233	+		GFF5057	0.70	+1.7
5,055,240	+		GFF5057	0.71	-0.5
5,055,240	+		GFF5057	0.71	-0.2
5,055,240	+		GFF5057	0.71	+0.2
5,055,240	+		GFF5057	0.71	-0.7