Strain Fitness in Sphingobium sp. HT1-2 around GFF5034

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,028,038	+		GFF5033	0.38	-1.7
5,028,047	+		GFF5033	0.38	-0.7
5,028,055	-		GFF5033	0.39	+0.9
5,028,062	+		GFF5033	0.39	+0.6
5,028,062	+		GFF5033	0.39	-0.3
5,028,112	+		GFF5033	0.43	-0.9
5,028,117	+		GFF5033	0.43	-0.5
5,028,122	+		GFF5033	0.44	+0.7
5,028,130	-		GFF5033	0.44	+0.9
5,028,130	-		GFF5033	0.44	-0.7
5,028,151	+		GFF5033	0.46	+1.2
5,028,152	-		GFF5033	0.46	-2.5
5,028,190	-		GFF5033	0.49	+0.8
5,028,191	-		GFF5033	0.49	+1.5
5,028,247	+		GFF5033	0.53	-1.3
5,028,247	+		GFF5033	0.53	-0.1
5,028,248	+		GFF5033	0.53	+0.6
5,028,248	+		GFF5033	0.53	+0.5
5,028,250	-		GFF5033	0.53	-0.9
5,028,255	-		GFF5033	0.54	-1.5
5,028,256	-		GFF5033	0.54	-0.9
5,028,256	-		GFF5033	0.54	+0.8
5,028,256	-		GFF5033	0.54	+0.7
5,028,256	-		GFF5033	0.54	-0.1
5,028,267	+		GFF5033	0.55	-0.8
5,028,285	-		GFF5033	0.56	+0.7
5,028,290	-		GFF5033	0.56	-0.3
5,028,306	+		GFF5033	0.57	-1.3
5,028,314	-		GFF5033	0.58	+0.1
5,028,314	-		GFF5033	0.58	+1.0
5,028,324	+		GFF5033	0.59	+1.9
5,028,332	-		GFF5033	0.59	+0.2
5,028,332	-		GFF5033	0.59	+1.1
5,028,350	-		GFF5033	0.61	-1.6
5,028,357	+		GFF5033	0.61	-2.0
5,028,367	+		GFF5033	0.62	-0.6
5,028,369	-		GFF5033	0.62	-2.3
5,028,375	-		GFF5033	0.63	-0.4
5,028,375	-		GFF5033	0.63	-0.4
5,028,388	-		GFF5033	0.63	+0.2
5,028,422	+		GFF5033	0.66	-0.9
5,028,436	+		GFF5033	0.67	-1.6
5,028,446	+		GFF5033	0.68	+1.7
5,028,456	+		GFF5033	0.69	-0.5
5,028,456	+		GFF5033	0.69	+0.8
5,028,480	+		GFF5033	0.70	-0.5
5,028,480	+		GFF5033	0.70	-1.3
5,028,504	+		GFF5033	0.72	-0.7
5,028,512	-		GFF5033	0.73	-0.9
5,028,513	+		GFF5033	0.73	-0.3
5,028,523	+		GFF5033	0.73	-0.1
5,028,534	+		GFF5033	0.74	-0.1
5,028,539	+		GFF5033	0.75	+0.2
5,028,544	+		GFF5033	0.75	-1.5
5,028,552	+		GFF5033	0.76	-1.6
5,028,552	+		GFF5033	0.76	-1.4
5,028,552	+		GFF5033	0.76	+0.4
5,028,557	+		GFF5033	0.76	+1.0
5,028,562	+		GFF5033	0.76	-1.3
5,028,570	+		GFF5033	0.77	+0.5
5,028,570	-		GFF5033	0.77	-1.0
5,028,579	+		GFF5033	0.78	+1.5
5,028,584	+		GFF5033	0.78	+0.9
5,028,587	-		GFF5033	0.78	+0.3
5,028,592	-		GFF5033	0.79	+0.0
5,028,592	-		GFF5033	0.79	-0.5
5,028,597	-		GFF5033	0.79	-2.6
5,028,638	+		GFF5033	0.82	+1.0
5,028,646	+		GFF5033	0.83	+1.2
5,028,646	+		GFF5033	0.83	+0.9
5,028,646	+		GFF5033	0.83	+2.0
5,028,654	-		GFF5033	0.83	-1.3
5,028,654	-		GFF5033	0.83	-1.8
5,028,710	+		GFF5033	0.87	-1.2
5,028,713	-		GFF5033	0.88	-0.1
5,028,715	+		GFF5033	0.88	-0.1
5,028,715	+		GFF5033	0.88	+0.9
5,028,718	-		GFF5033	0.88	-2.3
5,028,723	-		GFF5033	0.88	+1.2
5,028,723	-		GFF5033	0.88	+0.3
5,028,723	-		GFF5033	0.88	+0.1
5,028,730	+		GFF5033	0.89	-1.5
5,028,738	-		GFF5033	0.89	-0.4
5,028,769	-				-0.5
5,028,785	-				+0.9
5,028,785	-				-0.5
5,028,785	-				+1.1
5,028,787	+				+0.5
5,028,874	-				-1.6
5,028,911	+				-0.3
5,029,024	-				+0.3
5,029,123	-				+0.1
5,029,145	+		GFF5034	0.11	-1.8
5,029,158	-		GFF5034	0.12	-0.1
5,029,158	-		GFF5034	0.12	+1.6
5,029,227	+		GFF5034	0.18	+0.1
5,029,227	+		GFF5034	0.18	-0.8
5,029,231	+		GFF5034	0.18	+1.0
5,029,239	-		GFF5034	0.19	-0.1
5,029,267	+		GFF5034	0.22	-0.8
5,029,275	-		GFF5034	0.22	-0.5
5,029,298	+		GFF5034	0.24	-0.1
5,029,306	+		GFF5034	0.25	-1.1
5,029,306	+		GFF5034	0.25	-1.4
5,029,306	+		GFF5034	0.25	-2.1
5,029,326	-		GFF5034	0.27	-0.6
5,029,332	+		GFF5034	0.27	-1.1
5,029,340	-		GFF5034	0.28	+0.9
5,029,346	+		GFF5034	0.28	-1.6
5,029,354	-		GFF5034	0.29	+0.2
5,029,354	-		GFF5034	0.29	-0.4
5,029,357	+		GFF5034	0.29	+0.8
5,029,357	+		GFF5034	0.29	-2.4
5,029,360	-		GFF5034	0.30	+1.8
5,029,364	+		GFF5034	0.30	+0.2
5,029,365	-		GFF5034	0.30	+0.3
5,029,371	+		GFF5034	0.31	-0.1
5,029,375	+		GFF5034	0.31	-0.3
5,029,375	+		GFF5034	0.31	+0.0
5,029,389	-		GFF5034	0.32	+0.3
5,029,389	-		GFF5034	0.32	+0.4
5,029,410	-		GFF5034	0.34	-0.6
5,029,420	-		GFF5034	0.35	-0.0
5,029,436	+		GFF5034	0.36	+0.4
5,029,436	+		GFF5034	0.36	+0.9
5,029,443	+		GFF5034	0.37	+1.2
5,029,444	-		GFF5034	0.37	-1.1
5,029,444	-		GFF5034	0.37	+1.2
5,029,467	+		GFF5034	0.39	-0.1
5,029,467	+		GFF5034	0.39	+1.0
5,029,474	-		GFF5034	0.39	+1.7
5,029,475	-		GFF5034	0.40	+0.3
5,029,481	+		GFF5034	0.40	+0.1
5,029,481	+		GFF5034	0.40	-0.1
5,029,481	+		GFF5034	0.40	+0.5
5,029,486	+		GFF5034	0.41	+0.9
5,029,486	+		GFF5034	0.41	-1.1
5,029,487	-		GFF5034	0.41	-0.0
5,029,494	-		GFF5034	0.41	+0.2
5,029,494	-		GFF5034	0.41	+0.0
5,029,494	-		GFF5034	0.41	+1.5
5,029,494	-		GFF5034	0.41	+0.8
5,029,494	-		GFF5034	0.41	+1.5
5,029,494	-		GFF5034	0.41	-0.2
5,029,538	-		GFF5034	0.45	-1.2
5,029,559	+		GFF5034	0.47	+0.5
5,029,559	-		GFF5034	0.47	-1.8
5,029,613	+		GFF5034	0.52	-0.5
5,029,621	-		GFF5034	0.52	-0.3
5,029,621	-		GFF5034	0.52	+0.8
5,029,621	-		GFF5034	0.52	-0.5
5,029,636	+		GFF5034	0.54	-0.5
5,029,642	+		GFF5034	0.54	-1.2
5,029,642	+		GFF5034	0.54	-1.3
5,029,651	-		GFF5034	0.55	+0.7
5,029,651	-		GFF5034	0.55	+1.0
5,029,651	-		GFF5034	0.55	-0.9
5,029,656	-		GFF5034	0.55	+2.0
5,029,690	+		GFF5034	0.58	+1.0
5,029,710	+		GFF5034	0.60	+0.1
5,029,710	+		GFF5034	0.60	+1.4
5,029,710	+		GFF5034	0.60	+0.6
5,029,715	+		GFF5034	0.60	-0.2
5,029,715	+		GFF5034	0.60	+1.5
5,029,715	+		GFF5034	0.60	+0.1
5,029,715	+		GFF5034	0.60	-0.1
5,029,715	+		GFF5034	0.60	+0.3
5,029,715	+		GFF5034	0.60	+0.2
5,029,715	+		GFF5034	0.60	+1.2
5,029,718	-		GFF5034	0.61	+1.3
5,029,723	-		GFF5034	0.61	+0.7
5,029,723	-		GFF5034	0.61	+0.9
5,029,723	-		GFF5034	0.61	+1.8
5,029,723	-		GFF5034	0.61	+0.0
5,029,727	+		GFF5034	0.61	+0.0
5,029,728	+		GFF5034	0.62	+0.3
5,029,742	+		GFF5034	0.63	+0.1
5,029,751	-		GFF5034	0.64	-0.4
5,029,753	+		GFF5034	0.64	+1.4
5,029,753	+		GFF5034	0.64	-0.2
5,029,753	+		GFF5034	0.64	+1.0
5,029,753	+		GFF5034	0.64	-0.2
5,029,753	+		GFF5034	0.64	+0.4
5,029,753	+		GFF5034	0.64	+0.1
5,029,753	+		GFF5034	0.64	-0.0
5,029,753	+		GFF5034	0.64	+0.7
5,029,753	+		GFF5034	0.64	+0.8
5,029,753	+		GFF5034	0.64	-0.5
5,029,761	-		GFF5034	0.64	-1.5
5,029,761	-		GFF5034	0.64	+0.0
5,029,761	-		GFF5034	0.64	+0.6
5,029,761	-		GFF5034	0.64	-0.3
5,029,761	-		GFF5034	0.64	-0.3
5,029,761	-		GFF5034	0.64	+0.6
5,029,761	-		GFF5034	0.64	+0.9
5,029,761	-		GFF5034	0.64	+1.5
5,029,766	-		GFF5034	0.65	-0.0
5,029,766	-		GFF5034	0.65	-1.1
5,029,766	-		GFF5034	0.65	+2.0
5,029,790	+		GFF5034	0.67	+0.7
5,029,795	+		GFF5034	0.67	-0.5
5,029,810	-		GFF5034	0.69	+0.3
5,029,817	-		GFF5034	0.69	-0.9
5,029,817	-		GFF5034	0.69	+0.2
5,029,817	-		GFF5034	0.69	+0.1
5,029,822	-		GFF5034	0.70	-0.5
5,029,823	+		GFF5034	0.70	-0.9
5,029,824	+		GFF5034	0.70	+1.5
5,029,829	+		GFF5034	0.70	-1.7
5,029,829	+		GFF5034	0.70	-0.2
5,029,831	-		GFF5034	0.70	+0.7
5,029,835	+		GFF5034	0.71	-0.7
5,029,837	-		GFF5034	0.71	-0.1
5,029,881	+		GFF5034	0.75	-1.3
5,029,881	+		GFF5034	0.75	-0.2
5,029,881	+		GFF5034	0.75	-1.0
5,029,889	-		GFF5034	0.76	+0.6
5,029,889	-		GFF5034	0.76	+0.0
5,029,889	-		GFF5034	0.76	+0.9
5,029,889	-		GFF5034	0.76	+0.5
5,029,929	-		GFF5034	0.79	+1.7
5,029,933	-		GFF5034	0.79	+0.0
5,029,935	+		GFF5034	0.80	+0.3
5,029,935	+		GFF5034	0.80	-0.3
5,029,943	-		GFF5034	0.80	+0.3
5,029,943	-		GFF5034	0.80	+0.2
5,029,953	+		GFF5034	0.81	+1.2
5,029,961	-		GFF5034	0.82	-0.9
5,029,974	+		GFF5034	0.83	-1.9
5,029,982	-		GFF5034	0.84	+0.5
5,029,997	+		GFF5034	0.85	+0.2
5,029,997	-		GFF5034	0.85	+0.7
5,029,999	+		GFF5034	0.85	-1.2
5,029,999	+		GFF5034	0.85	+0.4
5,030,011	-		GFF5034	0.86	+0.7
5,030,018	+		GFF5034	0.87	+0.4
5,030,019	-		GFF5034	0.87	-0.4
5,030,026	-		GFF5034	0.87	+0.0
5,030,026	-		GFF5034	0.87	+1.1
5,030,037	+		GFF5034	0.88	+0.0
5,030,047	-		GFF5034	0.89	+0.3
5,030,053	+		GFF5034	0.90	+1.0
5,030,069	-				+0.1
5,030,076	+				+0.7
5,030,084	-				+1.1
5,030,088	+				-1.5
5,030,088	+				+1.2
5,030,088	+				+1.1
5,030,088	+				-0.7
5,030,096	+				+0.5
5,030,096	-				+0.3
5,030,096	-				+0.5
5,030,096	-				+0.8
5,030,096	-				-0.1
5,030,096	-				-0.1
5,030,125	+				-0.1
5,030,125	+				-1.2
5,030,125	+				+0.1
5,030,125	+				-0.8
5,030,125	+				+1.3
5,030,125	+				+0.1
5,030,125	+				+0.4
5,030,125	+				-0.3
5,030,133	-				+0.0
5,030,133	-				+1.6
5,030,133	-				+0.2
5,030,140	+				+0.2
5,030,153	+				+0.8
5,030,159	-				+0.7
5,030,216	+				-1.7
5,030,216	+				+1.4
5,030,216	+				-0.0
5,030,216	+				+1.2
5,030,216	+				+0.5
5,030,216	+				+0.9
5,030,223	+				+0.0
5,030,224	+				-0.1
5,030,224	+				+0.4
5,030,224	-				-0.5
5,030,224	-				+0.9
5,030,224	-				+0.0
5,030,232	-				+0.0
5,030,232	-				-0.4
5,030,234	+				-0.5
5,030,239	+				+0.1
5,030,242	-				+0.5
5,030,242	-				+0.1
5,030,242	-				-0.1
5,030,242	-				-0.4
5,030,261	-				-1.6
5,030,264	+				-1.2
5,030,264	+				+0.0
5,030,264	+				-0.2
5,030,282	-				+1.5
5,030,328	-				+0.4
5,030,342	-				+0.2
5,030,348	+				-0.5
5,030,353	+				+0.3
5,030,353	+				-1.6
5,030,353	+				+0.7
5,030,353	+				-0.8
5,030,353	+				+2.1
5,030,353	+				+0.5
5,030,353	+				-0.8
5,030,361	-				+0.2
5,030,361	-				+1.7
5,030,361	-				-1.8
5,030,361	-				+0.9
5,030,361	-				+1.7
5,030,361	-				+0.5
5,030,361	-				+0.1
5,030,361	-				+0.0
5,030,361	-				-0.8
5,030,361	-				+0.8
5,030,378	+				-1.0
5,030,378	+				+1.0
5,030,378	+				-0.6
5,030,410	+				-1.6
5,030,410	+				+0.5
5,030,410	-				+0.9
5,030,415	+				-0.6
5,030,418	-				-0.5
5,030,432	+				+0.4
5,030,433	+				+1.2
5,030,438	+				+0.0
5,030,443	+				+1.1
5,030,456	+				+1.0
5,030,517	+				-0.2
5,030,517	+				+0.6
5,030,520	-				-0.8
5,030,525	-				+0.6
5,030,525	-				+2.0
5,030,532	+				-0.4
5,030,540	-				-1.6
5,030,540	-				+1.5
5,030,540	-				+0.2
5,030,540	-				-0.2
5,030,540	-				-0.0
5,030,540	-				-0.4
5,030,561	+				+0.1
5,030,561	+				+0.1
5,030,569	-				+0.7
5,030,650	+				+0.3
5,030,658	-				+0.3
5,030,663	+				+0.1
5,030,663	+				-0.6
5,030,663	+				+1.0
5,030,668	+				-1.6
5,030,668	+				+1.3
5,030,668	+				+0.8
5,030,671	-				+0.9
5,030,671	-				-1.5
5,030,671	-				+0.1
5,030,671	-				-2.0
5,030,673	+				-0.5
5,030,678	+				+0.1
5,030,680	-				-0.8
5,030,686	+				+0.3
5,030,686	+				-0.6
5,030,727	-				+0.1
5,030,731	+				-0.7
5,030,749	-				-0.0
5,030,809	+				+0.2
5,030,825	+				+0.5
5,030,825	+				+1.6
5,030,830	+				-0.9
5,030,830	+				-1.7
5,030,838	-				+1.4
5,030,847	-				+0.1
5,030,873	+				-0.9
5,030,875	-				+0.4
5,030,881	-				+0.2
5,030,882	-				-0.4
5,030,913	+				+0.3
5,030,931	-				+1.5
5,030,939	-				+0.1
5,030,943	+				-1.6
5,030,966	+		GFF5035	0.11	-0.5
5,030,966	+		GFF5035	0.11	+0.7
5,030,974	-		GFF5035	0.12	+0.7
5,030,974	-		GFF5035	0.12	+0.1
5,030,974	-		GFF5035	0.12	-2.2
5,031,018	+		GFF5035	0.16	+0.7
5,031,031	-		GFF5035	0.17	-1.0
5,031,070	-		GFF5035	0.21	+1.2
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