Strain Fitness in Sphingobium sp. HT1-2 around GFF4994

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,991,407	+		GFF4991	0.48	+0.2
4,991,407	+		GFF4991	0.48	-0.5
4,991,415	-		GFF4991	0.49	-0.3
4,991,421	+		GFF4991	0.50	-0.2
4,991,421	+		GFF4991	0.50	-1.5
4,991,421	+		GFF4991	0.50	+0.1
4,991,429	-		GFF4991	0.52	+0.3
4,991,429	-		GFF4991	0.52	+0.2
4,991,429	-		GFF4991	0.52	+0.7
4,991,429	-		GFF4991	0.52	-1.6
4,991,435	-		GFF4991	0.53	+0.2
4,991,449	+		GFF4991	0.56	-0.2
4,991,449	+		GFF4991	0.56	-0.1
4,991,449	+		GFF4991	0.56	+0.8
4,991,449	+		GFF4991	0.56	+0.5
4,991,449	+		GFF4991	0.56	+0.5
4,991,457	-		GFF4991	0.57	-0.3
4,991,457	-		GFF4991	0.57	-0.4
4,991,457	-		GFF4991	0.57	-0.6
4,991,457	-		GFF4991	0.57	+1.2
4,991,459	+		GFF4991	0.58	-1.3
4,991,459	+		GFF4991	0.58	+1.0
4,991,459	+		GFF4991	0.58	-0.3
4,991,459	+		GFF4991	0.58	-1.5
4,991,459	+		GFF4991	0.58	+0.8
4,991,463	+		GFF4991	0.58	+1.0
4,991,467	-		GFF4991	0.59	+1.1
4,991,467	-		GFF4991	0.59	-0.1
4,991,467	-		GFF4991	0.59	-0.9
4,991,467	-		GFF4991	0.59	+1.5
4,991,467	-		GFF4991	0.59	+1.1
4,991,467	-		GFF4991	0.59	+0.7
4,991,512	+		GFF4991	0.68	-0.8
4,991,520	-		GFF4991	0.70	+1.0
4,991,523	+		GFF4991	0.70	-1.5
4,991,530	-		GFF4991	0.72	-0.1
4,991,550	-		GFF4991	0.75	-0.1
4,991,550	-		GFF4991	0.75	-1.3
4,991,550	-		GFF4991	0.75	+0.9
4,991,586	-		GFF4991	0.82	+0.2
4,991,610	+		GFF4991	0.87	+0.2
4,991,610	+		GFF4991	0.87	+0.1
4,991,610	+		GFF4991	0.87	-0.5
4,991,618	-		GFF4991	0.89	-0.0
4,991,618	-		GFF4991	0.89	+0.2
4,991,618	-		GFF4991	0.89	-0.2
4,991,640	-				-1.7
4,991,643	+				+1.1
4,991,658	+				+1.1
4,991,670	+				-0.1
4,991,670	+				+0.9
4,991,670	+				-0.7
4,991,678	-				-1.9
4,991,685	+				-0.8
4,991,711	+				+0.5
4,991,746	+				+1.7
4,991,749	-				-0.3
4,991,749	-				+0.6
4,991,774	+				+0.9
4,991,783	+				-1.6
4,991,846	-				+0.2
4,991,857	+				-0.3
4,991,860	-				-1.3
4,991,860	-				+0.5
4,991,879	+				-1.0
4,991,887	+				-0.1
4,991,947	-		GFF4992	0.47	+1.6
4,992,040	-				+0.9
4,992,040	-				+1.3
4,992,098	+				+0.1
4,992,098	+				-0.6
4,992,127	-				-0.3
4,992,127	-				+0.0
4,992,131	-				+1.5
4,992,185	-				-0.4
4,992,230	+				+0.1
4,992,230	+				-0.4
4,992,235	+				-1.0
4,992,243	-				+0.9
4,992,243	-				-0.9
4,992,245	+				+0.2
4,992,265	+				-0.2
4,992,323	-		GFF4993	0.25	-1.0
4,992,341	+		GFF4993	0.43	-0.3
4,992,353	+		GFF4993	0.55	+0.1
4,992,353	+		GFF4993	0.55	-0.3
4,992,353	+		GFF4993	0.55	+0.4
4,992,359	-		GFF4993	0.61	+0.4
4,992,359	-		GFF4993	0.61	+1.1
4,992,360	+		GFF4993	0.62	+0.1
4,992,360	+		GFF4993	0.62	+0.2
4,992,361	-		GFF4993	0.63	-0.5
4,992,361	-		GFF4993	0.63	+0.3
4,992,361	-		GFF4993	0.63	+1.7
4,992,364	-		GFF4993	0.66	+1.2
4,992,374	+		GFF4993	0.75	-1.3
4,992,374	+		GFF4993	0.75	+1.3
4,992,374	+		GFF4993	0.75	-0.8
4,992,374	+		GFF4993	0.75	+0.4
4,992,381	+		GFF4993	0.82	-0.1
4,992,381	+		GFF4993	0.82	-1.6
4,992,382	-		GFF4993	0.83	+0.6
4,992,382	-		GFF4993	0.83	-0.1
4,992,382	-		GFF4993	0.83	-0.5
4,992,389	-				+0.4
4,992,419	+		GFF4994	0.14	-0.1
4,992,419	+		GFF4994	0.14	-0.0
4,992,427	-		GFF4994	0.19	-0.1
4,992,474	+		GFF4994	0.50	+0.1
4,992,487	-		GFF4994	0.58	-1.0
4,992,487	-		GFF4994	0.58	+0.3
4,992,491	+		GFF4994	0.61	-0.2
4,992,494	-		GFF4994	0.63	+0.4
4,992,494	-		GFF4994	0.63	-1.1
4,992,496	+		GFF4994	0.64	+0.1
4,992,504	-		GFF4994	0.69	-0.2
4,992,504	-		GFF4994	0.69	-0.3
4,992,514	-		GFF4994	0.76	+1.4
4,992,531	+		GFF4994	0.87	+0.3
4,992,531	+		GFF4994	0.87	-0.2
4,992,531	+		GFF4994	0.87	+0.3
4,992,531	+		GFF4994	0.87	-0.5
4,992,531	+		GFF4994	0.87	+0.6
4,992,531	+		GFF4994	0.87	+1.0
4,992,531	+		GFF4994	0.87	+1.9
4,992,531	+		GFF4994	0.87	-0.7
4,992,531	+		GFF4994	0.87	-1.1
4,992,531	+		GFF4994	0.87	-1.8
4,992,539	-				-0.8
4,992,539	-				+0.4
4,992,539	-				-0.6
4,992,539	-				+0.0
4,992,575	+				+1.2
4,992,575	+				-0.5
4,992,575	+				-0.6
4,992,575	+				-0.3
4,992,575	+				+1.0
4,992,575	+				+0.1
4,992,575	+				+1.3
4,992,575	+				+0.3
4,992,575	+				-0.5
4,992,575	+				+0.2
4,992,575	+				+0.1
4,992,575	+				+0.5
4,992,575	+				-0.4
4,992,575	+				+1.0
4,992,575	+				-1.9
4,992,575	+				+0.4
4,992,575	+				+0.6
4,992,575	+				+0.1
4,992,575	+				-0.5
4,992,583	-				-0.3
4,992,583	-				-1.0
4,992,583	-				-0.2
4,992,583	-				-0.7
4,992,583	-				-0.3
4,992,583	-				-0.2
4,992,583	-				-0.3
4,992,583	-				-0.6
4,992,583	-				+0.8
4,992,583	-				+0.2
4,992,583	-				-1.6
4,992,583	-				+0.1
4,992,583	-				-0.0
4,992,583	-				+1.0
4,992,583	-				-1.9
4,992,583	-				+1.0
4,992,583	-				+0.2
4,992,583	-				+0.7
4,992,583	-				-0.3
4,992,583	-				+0.5
4,992,583	-				+1.0
4,992,639	+				+0.3
4,992,639	+				-0.0
4,992,647	-				-0.4
4,992,647	-				+1.3
4,992,647	-				-0.9
4,992,647	-				+0.2
4,992,651	-				+0.7
4,992,668	-				+0.5
4,992,706	+				-0.5
4,992,761	+				+0.7
4,992,771	+				+0.7
4,992,771	+				-0.7
4,992,771	+				-0.5
4,992,771	+				-1.3
4,992,771	+				-0.4
4,992,773	+				-0.0
4,992,779	-				+0.9
4,992,828	-				+0.3
4,992,862	+				-1.3
4,992,944	+				-0.8
4,992,946	+				+1.0
4,992,974	+				-0.6
4,992,974	+				+0.7
4,992,988	+				+1.5
4,993,004	-				+1.7
4,993,012	+				-0.2
4,993,012	+				-0.5
4,993,012	+				-0.8
4,993,025	-				+0.7
4,993,028	+				+1.1
4,993,028	+				-0.6
4,993,028	+				+0.6
4,993,028	+				-0.1
4,993,036	-				+0.9
4,993,036	-				+0.8
4,993,036	-				-1.7
4,993,036	-				+0.3
4,993,050	+				-0.9
4,993,074	+		GFF4995	0.17	+0.5
4,993,082	-		GFF4995	0.20	-0.9
4,993,084	+		GFF4995	0.20	-0.7
4,993,084	+		GFF4995	0.20	-0.1
4,993,087	+		GFF4995	0.21	+1.5
4,993,092	-		GFF4995	0.23	+0.5
4,993,097	-		GFF4995	0.25	-0.9
4,993,107	+		GFF4995	0.28	+0.3
4,993,107	+		GFF4995	0.28	-1.0
4,993,107	+		GFF4995	0.28	+0.1
4,993,107	+		GFF4995	0.28	-0.5
4,993,115	-		GFF4995	0.30	+1.0
4,993,115	-		GFF4995	0.30	+0.6
4,993,115	-		GFF4995	0.30	+0.8
4,993,124	-		GFF4995	0.33	-0.1
4,993,125	-		GFF4995	0.34	+0.8
4,993,136	+		GFF4995	0.37	+0.3
4,993,291	+		GFF4995	0.87	+0.6
4,993,291	+		GFF4995	0.87	+0.3
4,993,294	-		GFF4995	0.88	-0.1
4,993,294	-		GFF4995	0.88	-0.3
4,993,296	+		GFF4995	0.89	-0.7
4,993,299	-				+0.4
4,993,318	+				-0.3
4,993,329	+				-2.0
4,993,329	+				+0.2
4,993,339	+				-1.1
4,993,376	+				-0.1
4,993,383	-				+0.1
4,993,384	-				+1.0
4,993,384	-				+0.2
4,993,439	+				+0.1
4,993,439	+				-1.0
4,993,439	+				-0.0
4,993,447	-				-1.5
4,993,447	-				+0.8
4,993,447	-				+0.3
4,993,449	+				+0.8
4,993,457	-				-0.9
4,993,476	+				-0.9
4,993,500	+				-0.4
4,993,500	+				-1.0
4,993,500	+				+0.9
4,993,500	+				-0.8
4,993,508	-				-0.8
4,993,518	-				-1.1
4,993,522	-				-0.6
4,993,548	+				-0.2
4,993,548	+				+1.1
4,993,548	+				-0.3
4,993,548	+				-1.8
4,993,548	+				-0.7
4,993,548	+				+0.6
4,993,548	+				+0.8
4,993,548	+				-0.6
4,993,548	+				-0.3
4,993,548	+				-0.9
4,993,548	+				-1.8
4,993,548	+				-0.1
4,993,548	+				-0.0
4,993,548	+				+0.3
4,993,548	+				+0.5
4,993,548	+				+0.1
4,993,548	+				-0.1