Strain Fitness in Sphingobium sp. HT1-2 around GFF4947

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,938,548	-		GFF4946	0.37	+1.2
4,938,558	-		GFF4946	0.38	+1.3
4,938,593	-		GFF4946	0.40	-1.3
4,938,616	+		GFF4946	0.42	-0.4
4,938,634	+		GFF4946	0.43	-0.1
4,938,677	+		GFF4946	0.46	-1.5
4,938,677	+		GFF4946	0.46	-0.4
4,938,677	+		GFF4946	0.46	-1.5
4,938,677	+		GFF4946	0.46	-2.5
4,938,677	+		GFF4946	0.46	+0.6
4,938,677	+		GFF4946	0.46	-1.0
4,938,684	+		GFF4946	0.46	-1.4
4,938,685	-		GFF4946	0.46	+0.7
4,938,685	-		GFF4946	0.46	+0.5
4,938,685	-		GFF4946	0.46	-0.5
4,938,685	-		GFF4946	0.46	-0.0
4,938,685	-		GFF4946	0.46	-0.4
4,938,685	-		GFF4946	0.46	-1.2
4,938,685	-		GFF4946	0.46	+0.4
4,938,685	-		GFF4946	0.46	-0.9
4,938,685	-		GFF4946	0.46	-0.6
4,938,692	-		GFF4946	0.47	+0.4
4,938,692	-		GFF4946	0.47	+0.9
4,938,779	+		GFF4946	0.52	-1.7
4,938,789	+		GFF4946	0.53	-3.0
4,938,805	-		GFF4946	0.54	+1.0
4,938,814	+		GFF4946	0.55	+0.3
4,938,838	-		GFF4946	0.56	-0.8
4,938,885	+		GFF4946	0.59	+1.2
4,938,898	+		GFF4946	0.60	-0.6
4,938,898	+		GFF4946	0.60	+0.4
4,938,906	-		GFF4946	0.61	-0.1
4,938,906	-		GFF4946	0.61	-0.1
4,938,906	-		GFF4946	0.61	-1.4
4,938,906	-		GFF4946	0.61	+0.1
4,938,918	+		GFF4946	0.62	-0.9
4,938,936	+		GFF4946	0.63	-0.1
4,938,963	+		GFF4946	0.65	-1.1
4,938,963	+		GFF4946	0.65	+0.5
4,938,963	+		GFF4946	0.65	+0.3
4,938,963	+		GFF4946	0.65	+0.3
4,938,963	+		GFF4946	0.65	-0.4
4,938,963	+		GFF4946	0.65	-0.7
4,938,968	+		GFF4946	0.65	-2.0
4,938,971	-		GFF4946	0.65	-1.6
4,938,971	-		GFF4946	0.65	-0.5
4,938,982	+		GFF4946	0.66	-0.6
4,939,031	+		GFF4946	0.69	-1.1
4,939,031	+		GFF4946	0.69	-0.2
4,939,031	+		GFF4946	0.69	+0.5
4,939,031	+		GFF4946	0.69	-1.5
4,939,036	+		GFF4946	0.70	-1.2
4,939,036	+		GFF4946	0.70	-0.3
4,939,036	+		GFF4946	0.70	-2.1
4,939,039	-		GFF4946	0.70	-1.0
4,939,041	+		GFF4946	0.70	-0.1
4,939,041	+		GFF4946	0.70	-2.3
4,939,044	-		GFF4946	0.70	+0.1
4,939,049	-		GFF4946	0.70	-0.6
4,939,049	-		GFF4946	0.70	+0.6
4,939,063	+		GFF4946	0.71	-0.5
4,939,067	-		GFF4946	0.72	-0.6
4,939,084	+		GFF4946	0.73	-1.2
4,939,126	+		GFF4946	0.76	-1.1
4,939,126	+		GFF4946	0.76	-1.1
4,939,129	-		GFF4946	0.76	-2.3
4,939,134	-		GFF4946	0.76	+0.4
4,939,134	-		GFF4946	0.76	+0.7
4,939,134	-		GFF4946	0.76	-1.5
4,939,134	-		GFF4946	0.76	-0.5
4,939,134	-		GFF4946	0.76	-1.5
4,939,134	-		GFF4946	0.76	-1.3
4,939,134	-		GFF4946	0.76	+1.4
4,939,134	-		GFF4946	0.76	-1.1
4,939,134	-		GFF4946	0.76	-1.1
4,939,144	+		GFF4946	0.77	-0.9
4,939,152	-		GFF4946	0.77	-0.6
4,939,152	-		GFF4946	0.77	-1.9
4,939,154	-		GFF4946	0.77	-1.1
4,939,154	-		GFF4946	0.77	-0.4
4,939,178	+		GFF4946	0.79	-0.2
4,939,178	+		GFF4946	0.79	-0.2
4,939,186	-		GFF4946	0.80	-0.4
4,939,205	+		GFF4946	0.81	-0.4
4,939,266	+		GFF4946	0.85	+0.9
4,939,328	+		GFF4946	0.89	-1.1
4,939,328	+		GFF4946	0.89	+0.3
4,939,328	+		GFF4946	0.89	-0.8
4,939,333	+		GFF4946	0.89	-0.8
4,939,336	-		GFF4946	0.90	-0.4
4,939,336	-		GFF4946	0.90	-0.6
4,939,336	-		GFF4946	0.90	-0.1
4,939,336	-		GFF4946	0.90	-0.5
4,939,336	-		GFF4946	0.90	-0.4
4,939,365	+				+1.2
4,939,365	+				-0.6
4,939,427	-				+0.1
4,939,456	-				+0.3
4,939,481	-				-0.0
4,939,481	-				-1.1
4,939,540	+				-1.9
4,939,540	+				+0.4
4,939,551	+				-0.1
4,939,578	+				-1.4
4,939,578	+				-3.1
4,939,583	+				-2.3
4,939,586	-				-1.1
4,939,586	-				-1.5
4,939,586	-				-1.5
4,939,601	+				-3.4
4,939,602	+				-0.8
4,939,604	-				-2.3
4,939,630	+				-0.9
4,939,647	+				-0.4
4,939,657	+		GFF4947	0.10	-0.6
4,939,661	-		GFF4947	0.10	-1.8
4,939,661	-		GFF4947	0.10	-3.1
4,939,670	-		GFF4947	0.11	-1.2
4,939,672	+		GFF4947	0.11	+0.9
4,939,694	+		GFF4947	0.13	-2.1
4,939,710	+		GFF4947	0.14	-1.6
4,939,716	-		GFF4947	0.15	-3.8
4,939,730	+		GFF4947	0.16	-0.6
4,939,738	-		GFF4947	0.17	-1.0
4,939,760	+		GFF4947	0.18	-1.3
4,939,760	+		GFF4947	0.18	-3.0
4,939,760	+		GFF4947	0.18	-2.5
4,939,760	+		GFF4947	0.18	-1.3
4,939,760	+		GFF4947	0.18	-2.1
4,939,763	-		GFF4947	0.19	+0.2
4,939,763	-		GFF4947	0.19	-2.7
4,939,765	+		GFF4947	0.19	-2.0
4,939,768	-		GFF4947	0.19	-2.1
4,939,768	-		GFF4947	0.19	-0.6
4,939,768	-		GFF4947	0.19	-0.5
4,939,773	-		GFF4947	0.19	-2.1
4,939,773	-		GFF4947	0.19	-3.4
4,939,809	-		GFF4947	0.22	-1.1
4,939,832	+		GFF4947	0.24	-0.1
4,939,872	-		GFF4947	0.27	-1.4
4,939,930	+		GFF4947	0.32	-1.7
4,939,936	+		GFF4947	0.33	-2.7
4,939,936	+		GFF4947	0.33	-1.6
4,939,944	-		GFF4947	0.33	-2.4
4,939,944	-		GFF4947	0.33	-2.1
4,939,944	-		GFF4947	0.33	-2.1
4,939,944	-		GFF4947	0.33	-0.7
4,939,945	-		GFF4947	0.33	-2.3
4,939,955	-		GFF4947	0.34	-0.4
4,939,958	+		GFF4947	0.34	-1.1
4,939,966	-		GFF4947	0.35	-0.1
4,939,967	+		GFF4947	0.35	-2.1
4,939,988	-		GFF4947	0.37	-2.8
4,940,001	-		GFF4947	0.38	-2.3
4,940,027	-		GFF4947	0.40	+0.2
4,940,074	+		GFF4947	0.44	-2.1
4,940,082	-		GFF4947	0.44	-0.4
4,940,083	+		GFF4947	0.44	-2.4
4,940,091	+		GFF4947	0.45	-0.0
4,940,120	-		GFF4947	0.47	-1.0
4,940,130	+		GFF4947	0.48	-1.6
4,940,130	+		GFF4947	0.48	-1.4
4,940,130	+		GFF4947	0.48	-3.4
4,940,138	-		GFF4947	0.49	-0.4
4,940,219	-		GFF4947	0.55	+0.0
4,940,234	-		GFF4947	0.57	-1.0
4,940,245	-		GFF4947	0.58	-1.7
4,940,249	+		GFF4947	0.58	-1.5
4,940,249	+		GFF4947	0.58	-2.7
4,940,249	+		GFF4947	0.58	-1.7
4,940,249	+		GFF4947	0.58	-1.6
4,940,249	+		GFF4947	0.58	-0.7
4,940,249	+		GFF4947	0.58	-1.1
4,940,249	-		GFF4947	0.58	-1.8
4,940,257	-		GFF4947	0.59	-2.6
4,940,257	-		GFF4947	0.59	-1.6
4,940,257	-		GFF4947	0.59	-1.5
4,940,257	-		GFF4947	0.59	+0.9
4,940,257	-		GFF4947	0.59	+0.4
4,940,257	-		GFF4947	0.59	-2.0
4,940,257	-		GFF4947	0.59	-1.4
4,940,257	-		GFF4947	0.59	-2.0
4,940,257	-		GFF4947	0.59	-1.2
4,940,257	-		GFF4947	0.59	-1.5
4,940,257	-		GFF4947	0.59	-2.6
4,940,280	-		GFF4947	0.60	-1.4
4,940,334	+		GFF4947	0.65	-1.6
4,940,334	+		GFF4947	0.65	-1.4
4,940,338	-		GFF4947	0.65	-1.4
4,940,398	+		GFF4947	0.70	-2.7
4,940,433	-		GFF4947	0.73	-1.7
4,940,445	+		GFF4947	0.74	-1.8
4,940,445	+		GFF4947	0.74	-1.6
4,940,445	+		GFF4947	0.74	-1.4
4,940,450	+		GFF4947	0.74	-3.1
4,940,455	+		GFF4947	0.74	-2.7
4,940,455	+		GFF4947	0.74	-0.1
4,940,455	+		GFF4947	0.74	-1.3
4,940,458	-		GFF4947	0.75	-2.6
4,940,458	-		GFF4947	0.75	-0.4
4,940,458	-		GFF4947	0.75	-2.6
4,940,463	-		GFF4947	0.75	-2.3
4,940,476	+		GFF4947	0.76	-0.6
4,940,476	+		GFF4947	0.76	-1.1
4,940,476	+		GFF4947	0.76	-1.1
4,940,476	+		GFF4947	0.76	-1.0
4,940,484	-		GFF4947	0.77	-4.2
4,940,541	-		GFF4947	0.81	-1.4
4,940,555	-		GFF4947	0.83	-0.6
4,940,622	+		GFF4947	0.88	-3.2
4,940,648	+				-1.9
4,940,650	+				-2.4
4,940,658	-				-1.5
4,940,662	+				-2.5
4,940,665	-				-2.8
4,940,670	-				-2.2
4,940,690	-				-3.5
4,940,693	+				-1.6
4,940,718	+				-0.1
4,940,736	+				-1.6
4,940,736	-				-1.4
4,940,766	+				+0.6
4,940,787	+				-2.6
4,940,787	+				+0.3
4,940,787	+				-2.0
4,940,787	-				-0.5
4,940,795	-				-1.2
4,940,826	-				+1.5
4,940,827	+				-2.0
4,940,851	-				-1.3
4,940,910	-		GFF4948	0.16	-1.8
4,941,014	+		GFF4948	0.29	+1.2
4,941,014	+		GFF4948	0.29	-0.7
4,941,014	+		GFF4948	0.29	+0.3
4,941,017	-		GFF4948	0.29	-0.4
4,941,022	-		GFF4948	0.30	+0.0
4,941,022	-		GFF4948	0.30	-0.8
4,941,086	+		GFF4948	0.38	+0.5
4,941,118	+		GFF4948	0.42	-0.3
4,941,118	+		GFF4948	0.42	-0.7
4,941,118	+		GFF4948	0.42	+0.5
4,941,187	-		GFF4948	0.50	-1.4
4,941,188	-		GFF4948	0.51	-0.3
4,941,188	-		GFF4948	0.51	-0.1
4,941,193	-		GFF4948	0.51	-0.1
4,941,315	-		GFF4948	0.67	-0.8
4,941,331	-		GFF4948	0.69	-0.0
4,941,334	+		GFF4948	0.69	-0.3
4,941,375	-		GFF4948	0.74	-1.5
4,941,418	+		GFF4948	0.79	-2.4
4,941,420	+		GFF4948	0.80	-0.4
4,941,421	-		GFF4948	0.80	+0.4
4,941,421	-		GFF4948	0.80	-0.8
4,941,426	-		GFF4948	0.81	-0.5
4,941,426	-		GFF4948	0.81	+0.0
4,941,426	-		GFF4948	0.81	+1.2
4,941,426	-		GFF4948	0.81	-0.9
4,941,453	-		GFF4948	0.84	-0.4
4,941,465	-		GFF4948	0.85	+0.6
4,941,466	-		GFF4948	0.86	+0.4
4,941,503	+				-0.2
4,941,518	+				-0.8
4,941,521	-				-0.8
4,941,523	+				+0.9
4,941,568	-				+0.3
4,941,695	+		GFF4949	0.16	+0.4
4,941,700	+		GFF4949	0.17	-0.4
4,941,700	+		GFF4949	0.17	+0.3
4,941,700	+		GFF4949	0.17	-0.8
4,941,703	-		GFF4949	0.17	-0.2
4,941,708	-		GFF4949	0.18	+0.2
4,941,711	+		GFF4949	0.18	+0.8