Strain Fitness in Sphingobium sp. HT1-2 around GFF4932

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,922,010	+		GFF4930	0.60	-1.3
4,922,043	+		GFF4930	0.62	+0.1
4,922,043	+		GFF4930	0.62	+0.1
4,922,046	-		GFF4930	0.62	+0.1
4,922,059	+		GFF4930	0.63	-0.5
4,922,059	+		GFF4930	0.63	-2.0
4,922,064	+		GFF4930	0.64	-1.1
4,922,064	+		GFF4930	0.64	+0.0
4,922,065	+		GFF4930	0.64	+0.2
4,922,067	-		GFF4930	0.64	-0.1
4,922,074	+		GFF4930	0.65	+0.3
4,922,112	+		GFF4930	0.68	-0.5
4,922,151	-		GFF4930	0.71	-0.0
4,922,183	+		GFF4930	0.73	-0.1
4,922,183	+		GFF4930	0.73	-0.5
4,922,183	+		GFF4930	0.73	+0.4
4,922,191	-		GFF4930	0.74	-0.5
4,922,193	+		GFF4930	0.74	-0.8
4,922,257	-		GFF4930	0.79	-0.2
4,922,284	-		GFF4930	0.81	-2.6
4,922,328	-		GFF4930	0.85	-0.0
4,922,357	+		GFF4930	0.87	-2.7
4,922,380	+		GFF4930	0.89	+0.5
4,922,380	+		GFF4930	0.89	-0.6
4,922,390	+		GFF4930	0.90	-0.8
4,922,390	+		GFF4930	0.90	+0.2
4,922,390	+		GFF4930	0.90	+0.6
4,922,390	+		GFF4930	0.90	-2.1
4,922,390	+		GFF4930	0.90	+0.6
4,922,390	+		GFF4930	0.90	+0.0
4,922,390	+		GFF4930	0.90	-0.5
4,922,390	+		GFF4930	0.90	+0.2
4,922,390	+		GFF4930	0.90	+0.4
4,922,390	+		GFF4930	0.90	-0.2
4,922,390	+		GFF4930	0.90	-0.2
4,922,390	+		GFF4930	0.90	+0.2
4,922,390	+		GFF4930	0.90	-3.1
4,922,390	+		GFF4930	0.90	-0.9
4,922,398	-				-1.1
4,922,423	-				-0.8
4,922,449	+				+0.6
4,922,480	+				-0.7
4,922,496	+				-1.2
4,922,496	+				+1.3
4,922,496	+				-0.4
4,922,496	+				-0.6
4,922,496	+				+0.1
4,922,496	+				-1.6
4,922,496	+				-0.5
4,922,504	-				+0.2
4,922,504	-				+0.2
4,922,509	-				-0.2
4,922,513	-				+0.9
4,922,513	-				-0.6
4,922,513	-				+0.9
4,922,531	+				+0.5
4,922,535	-				-0.4
4,922,539	-				+0.4
4,922,539	-				-0.4
4,922,546	+				-0.8
4,922,556	+				-1.4
4,922,566	-				+0.3
4,922,602	+				-1.3
4,922,610	-				-0.7
4,922,660	+				-0.7
4,922,668	-				-0.8
4,922,668	-				-0.5
4,922,692	+				-0.0
4,922,727	+				-0.4
4,922,727	+				-0.9
4,922,735	-				-2.8
4,922,750	+				-0.4
4,922,864	-		GFF4931	0.49	-3.2
4,922,877	+		GFF4931	0.55	-1.3
4,922,911	+		GFF4931	0.69	+0.7
4,922,914	-		GFF4931	0.71	+0.0
4,922,921	+		GFF4931	0.74	-0.6
4,922,975	+				+0.5
4,922,977	-				-1.7
4,922,989	+				-0.4
4,922,989	+				-0.8
4,923,033	+				-0.6
4,923,035	-				-0.2
4,923,043	-				-0.3
4,923,043	-				-0.3
4,923,077	+				-0.5
4,923,085	-				-0.0
4,923,089	+		GFF4932	0.10	-0.4
4,923,169	-		GFF4932	0.20	+0.2
4,923,229	+		GFF4932	0.27	+0.5
4,923,231	+		GFF4932	0.27	+1.1
4,923,231	+		GFF4932	0.27	-0.2
4,923,239	-		GFF4932	0.28	-0.1
4,923,239	-		GFF4932	0.28	-0.5
4,923,244	+		GFF4932	0.29	+0.1
4,923,249	+		GFF4932	0.29	-0.8
4,923,249	+		GFF4932	0.29	+1.3
4,923,249	+		GFF4932	0.29	-0.4
4,923,250	+		GFF4932	0.29	+1.1
4,923,250	+		GFF4932	0.29	+0.4
4,923,255	+		GFF4932	0.30	-0.4
4,923,257	-		GFF4932	0.30	-0.4
4,923,257	-		GFF4932	0.30	-2.8
4,923,257	-		GFF4932	0.30	-1.9
4,923,288	+		GFF4932	0.34	+0.4
4,923,295	+		GFF4932	0.35	-1.1
4,923,326	-		GFF4932	0.39	-0.3
4,923,327	-		GFF4932	0.39	-2.2
4,923,330	+		GFF4932	0.39	-0.9
4,923,330	+		GFF4932	0.39	-0.5
4,923,342	-		GFF4932	0.41	-2.1
4,923,376	-		GFF4932	0.45	+0.0
4,923,434	-		GFF4932	0.52	-2.2
4,923,455	+		GFF4932	0.54	-0.3
4,923,484	+		GFF4932	0.58	-2.0
4,923,485	+		GFF4932	0.58	-0.2
4,923,492	-		GFF4932	0.59	-0.5
4,923,502	+		GFF4932	0.60	-0.6
4,923,513	+		GFF4932	0.61	-0.1
4,923,525	+		GFF4932	0.62	+1.0
4,923,525	+		GFF4932	0.62	-0.6
4,923,525	+		GFF4932	0.62	+0.0
4,923,525	+		GFF4932	0.62	+0.3
4,923,526	-		GFF4932	0.63	-0.5
4,923,531	-		GFF4932	0.63	-0.1
4,923,533	+		GFF4932	0.63	-0.5
4,923,533	-		GFF4932	0.63	+0.8
4,923,533	-		GFF4932	0.63	+0.3
4,923,566	+		GFF4932	0.67	-0.5
4,923,584	-		GFF4932	0.70	-0.7
4,923,587	+		GFF4932	0.70	-0.1
4,923,587	+		GFF4932	0.70	-0.5
4,923,589	-		GFF4932	0.70	-0.5
4,923,609	+		GFF4932	0.73	+0.5
4,923,703	+		GFF4932	0.84	-0.1
4,923,705	+		GFF4932	0.84	-0.7
4,923,710	+		GFF4932	0.85	-1.6
4,923,805	+				-0.6
4,923,831	+				-0.3
4,923,831	+				-1.0
4,923,831	+				-0.4
4,923,831	+				-1.8
4,923,839	-				-1.9
4,923,929	-				-1.3
4,923,929	-				-0.7
4,923,934	-				-0.4
4,924,006	+				-0.2
4,924,016	+				-1.2
4,924,030	+				-0.1
4,924,030	+				-0.9
4,924,031	-				-0.6
4,924,035	+				-0.9
4,924,035	+				-0.5
4,924,043	-				-0.3
4,924,076	+		GFF4933	0.11	-2.0
4,924,079	-		GFF4933	0.11	-0.5
4,924,133	+		GFF4933	0.13	+0.2
4,924,133	+		GFF4933	0.13	+0.3
4,924,153	-		GFF4933	0.14	-1.5
4,924,153	-		GFF4933	0.14	-0.1
4,924,165	+		GFF4933	0.15	-2.3
4,924,196	-		GFF4933	0.16	-1.1
4,924,212	+		GFF4933	0.17	-0.3
4,924,230	-		GFF4933	0.18	+0.1
4,924,240	+		GFF4933	0.18	-0.8
4,924,243	-		GFF4933	0.18	-0.2
4,924,243	-		GFF4933	0.18	-0.5
4,924,253	-		GFF4933	0.19	-0.3
4,924,253	-		GFF4933	0.19	-0.2
4,924,258	+		GFF4933	0.19	-0.4
4,924,263	+		GFF4933	0.19	-0.6
4,924,263	+		GFF4933	0.19	+0.3
4,924,263	+		GFF4933	0.19	-0.6
4,924,263	+		GFF4933	0.19	-1.2
4,924,263	+		GFF4933	0.19	+0.3
4,924,271	-		GFF4933	0.19	+0.6
4,924,271	-		GFF4933	0.19	-1.0
4,924,271	-		GFF4933	0.19	-0.3
4,924,278	+		GFF4933	0.20	+0.7
4,924,278	+		GFF4933	0.20	-0.2
4,924,278	+		GFF4933	0.20	+0.5
4,924,286	-		GFF4933	0.20	-1.9
4,924,286	-		GFF4933	0.20	-0.2
4,924,294	+		GFF4933	0.20	+0.1
4,924,353	+		GFF4933	0.23	-1.3
4,924,376	+		GFF4933	0.24	-1.1
4,924,376	+		GFF4933	0.24	+0.0
4,924,376	+		GFF4933	0.24	+0.8
4,924,376	+		GFF4933	0.24	+0.7
4,924,376	+		GFF4933	0.24	+0.1
4,924,376	+		GFF4933	0.24	+0.2
4,924,376	+		GFF4933	0.24	-0.4
4,924,376	+		GFF4933	0.24	-1.6
4,924,376	+		GFF4933	0.24	+1.6
4,924,376	+		GFF4933	0.24	-0.4
4,924,376	+		GFF4933	0.24	-2.3
4,924,376	+		GFF4933	0.24	-0.0
4,924,384	-		GFF4933	0.24	-0.8
4,924,384	-		GFF4933	0.24	+0.1
4,924,384	-		GFF4933	0.24	-1.3
4,924,384	-		GFF4933	0.24	-1.0
4,924,384	-		GFF4933	0.24	+0.3
4,924,384	-		GFF4933	0.24	-0.9
4,924,384	-		GFF4933	0.24	-0.6
4,924,384	-		GFF4933	0.24	-0.7
4,924,407	-		GFF4933	0.26	+0.5
4,924,469	-		GFF4933	0.28	-2.5
4,924,485	+		GFF4933	0.29	+0.1
4,924,485	+		GFF4933	0.29	+0.4
4,924,485	+		GFF4933	0.29	+0.7
4,924,485	+		GFF4933	0.29	-0.2
4,924,493	-		GFF4933	0.29	-0.8
4,924,493	-		GFF4933	0.29	-0.2
4,924,493	-		GFF4933	0.29	-0.8
4,924,493	-		GFF4933	0.29	+0.2
4,924,493	-		GFF4933	0.29	+0.5
4,924,503	+		GFF4933	0.30	-0.5
4,924,511	-		GFF4933	0.30	+0.8
4,924,511	-		GFF4933	0.30	-0.4
4,924,538	-		GFF4933	0.31	-0.0
4,924,547	+		GFF4933	0.32	+1.5
4,924,547	+		GFF4933	0.32	-0.6
4,924,547	+		GFF4933	0.32	-0.2
4,924,555	-		GFF4933	0.32	-0.9
4,924,642	-		GFF4933	0.36	-0.9
4,924,642	-		GFF4933	0.36	+0.1
4,924,660	+		GFF4933	0.37	+0.7
4,924,660	+		GFF4933	0.37	+0.8
4,924,686	+		GFF4933	0.38	-0.7
4,924,686	+		GFF4933	0.38	-0.8
4,924,722	+		GFF4933	0.40	-0.8
4,924,722	+		GFF4933	0.40	-0.4
4,924,722	+		GFF4933	0.40	-1.4
4,924,729	-		GFF4933	0.40	-1.0
4,924,730	-		GFF4933	0.40	+0.1
4,924,730	-		GFF4933	0.40	-0.6
4,924,738	+		GFF4933	0.40	-0.3
4,924,738	+		GFF4933	0.40	-0.7
4,924,738	+		GFF4933	0.40	-0.7
4,924,745	+		GFF4933	0.41	-0.1
4,924,746	-		GFF4933	0.41	-0.9
4,924,746	-		GFF4933	0.41	-2.3
4,924,746	-		GFF4933	0.41	+0.3
4,924,751	-		GFF4933	0.41	+0.7
4,924,784	+		GFF4933	0.43	+0.1
4,924,810	-		GFF4933	0.44	-0.5
4,924,837	-		GFF4933	0.45	+1.4