Strain Fitness in Sphingobium sp. HT1-2 around GFF4874

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,859,265	-		GFF4872	0.69	-0.2
4,859,265	-		GFF4872	0.69	+0.2
4,859,265	-		GFF4872	0.69	+0.8
4,859,265	-		GFF4872	0.69	-0.8
4,859,265	-		GFF4872	0.69	-2.3
4,859,265	-		GFF4872	0.69	+0.3
4,859,265	-		GFF4872	0.69	-0.2
4,859,265	-		GFF4872	0.69	-1.0
4,859,266	+		GFF4872	0.69	-1.0
4,859,292	+		GFF4872	0.70	+0.6
4,859,300	-		GFF4872	0.71	+0.2
4,859,314	+		GFF4872	0.72	-1.8
4,859,314	+		GFF4872	0.72	-1.4
4,859,314	+		GFF4872	0.72	-1.1
4,859,319	+		GFF4872	0.72	+1.5
4,859,319	+		GFF4872	0.72	-0.3
4,859,322	-		GFF4872	0.72	-1.3
4,859,322	-		GFF4872	0.72	-0.1
4,859,322	-		GFF4872	0.72	-0.3
4,859,322	-		GFF4872	0.72	-1.0
4,859,324	+		GFF4872	0.72	-0.7
4,859,332	-		GFF4872	0.73	+0.1
4,859,332	-		GFF4872	0.73	+0.5
4,859,337	+		GFF4872	0.73	-0.7
4,859,345	+		GFF4872	0.73	-0.8
4,859,359	+		GFF4872	0.74	+0.1
4,859,367	+		GFF4872	0.75	+0.5
4,859,384	+		GFF4872	0.76	-0.9
4,859,392	-		GFF4872	0.76	-0.4
4,859,402	+		GFF4872	0.77	-0.8
4,859,402	+		GFF4872	0.77	-0.8
4,859,402	+		GFF4872	0.77	+0.8
4,859,402	+		GFF4872	0.77	+0.5
4,859,402	+		GFF4872	0.77	-1.6
4,859,402	+		GFF4872	0.77	+0.1
4,859,402	+		GFF4872	0.77	-1.1
4,859,402	+		GFF4872	0.77	+0.5
4,859,402	+		GFF4872	0.77	-0.4
4,859,402	+		GFF4872	0.77	-2.5
4,859,402	+		GFF4872	0.77	-0.6
4,859,402	+		GFF4872	0.77	-1.5
4,859,402	+		GFF4872	0.77	-0.5
4,859,402	+		GFF4872	0.77	-0.2
4,859,402	+		GFF4872	0.77	-0.8
4,859,402	+		GFF4872	0.77	-2.7
4,859,402	+		GFF4872	0.77	-0.4
4,859,402	+		GFF4872	0.77	-0.5
4,859,402	+		GFF4872	0.77	-0.3
4,859,402	+		GFF4872	0.77	-1.1
4,859,402	+		GFF4872	0.77	+0.4
4,859,402	+		GFF4872	0.77	-1.4
4,859,402	+		GFF4872	0.77	+0.1
4,859,402	+		GFF4872	0.77	+0.3
4,859,402	+		GFF4872	0.77	-0.3
4,859,402	+		GFF4872	0.77	+1.1
4,859,402	+		GFF4872	0.77	+0.1
4,859,402	+		GFF4872	0.77	-0.8
4,859,408	-		GFF4872	0.77	-0.6
4,859,408	-		GFF4872	0.77	+0.5
4,859,410	-		GFF4872	0.77	+0.0
4,859,410	-		GFF4872	0.77	+0.8
4,859,410	-		GFF4872	0.77	+0.1
4,859,410	-		GFF4872	0.77	-0.3
4,859,410	-		GFF4872	0.77	-0.8
4,859,410	-		GFF4872	0.77	-0.1
4,859,410	-		GFF4872	0.77	-1.4
4,859,410	-		GFF4872	0.77	-0.4
4,859,410	-		GFF4872	0.77	-1.8
4,859,410	-		GFF4872	0.77	-0.5
4,859,410	-		GFF4872	0.77	+0.1
4,859,410	-		GFF4872	0.77	-0.7
4,859,410	-		GFF4872	0.77	+0.3
4,859,410	-		GFF4872	0.77	+0.1
4,859,410	-		GFF4872	0.77	-0.1
4,859,410	-		GFF4872	0.77	+0.1
4,859,410	-		GFF4872	0.77	-1.6
4,859,410	-		GFF4872	0.77	+0.5
4,859,410	-		GFF4872	0.77	-0.3
4,859,410	-		GFF4872	0.77	+0.5
4,859,410	-		GFF4872	0.77	-0.8
4,859,410	-		GFF4872	0.77	-0.8
4,859,410	-		GFF4872	0.77	+0.6
4,859,410	-		GFF4872	0.77	-0.2
4,859,410	-		GFF4872	0.77	+0.3
4,859,410	-		GFF4872	0.77	-0.1
4,859,410	-		GFF4872	0.77	-1.6
4,859,410	-		GFF4872	0.77	-0.1
4,859,410	-		GFF4872	0.77	-1.4
4,859,410	-		GFF4872	0.77	-1.9
4,859,410	-		GFF4872	0.77	-0.4
4,859,410	-		GFF4872	0.77	+0.1
4,859,410	-		GFF4872	0.77	-0.7
4,859,410	-		GFF4872	0.77	-1.0
4,859,410	-		GFF4872	0.77	-0.9
4,859,410	-		GFF4872	0.77	-0.4
4,859,410	-		GFF4872	0.77	-0.6
4,859,410	-		GFF4872	0.77	-0.3
4,859,410	-		GFF4872	0.77	-0.5
4,859,420	-		GFF4872	0.78	-0.4
4,859,424	+		GFF4872	0.78	-1.2
4,859,426	-		GFF4872	0.78	-2.0
4,859,433	+		GFF4872	0.79	-0.1
4,859,454	+		GFF4872	0.80	-1.4
4,859,462	-		GFF4872	0.80	+0.7
4,859,480	+		GFF4872	0.82	+0.1
4,859,488	-		GFF4872	0.82	-0.7
4,859,490	+		GFF4872	0.82	-2.2
4,859,507	+		GFF4872	0.83	+0.7
4,859,507	+		GFF4872	0.83	-0.3
4,859,508	-		GFF4872	0.83	+0.8
4,859,515	-		GFF4872	0.84	-2.2
4,859,537	+		GFF4872	0.85	-0.2
4,859,537	+		GFF4872	0.85	+0.4
4,859,537	+		GFF4872	0.85	-1.4
4,859,537	+		GFF4872	0.85	-1.4
4,859,545	-		GFF4872	0.85	-0.4
4,859,545	-		GFF4872	0.85	-1.0
4,859,545	-		GFF4872	0.85	-2.7
4,859,545	-		GFF4872	0.85	-1.9
4,859,545	-		GFF4872	0.85	-2.2
4,859,545	-		GFF4872	0.85	-1.0
4,859,545	-		GFF4872	0.85	-1.0
4,859,558	+		GFF4872	0.86	-0.5
4,859,566	-		GFF4872	0.87	+0.3
4,859,570	+		GFF4872	0.87	-1.1
4,859,571	-		GFF4872	0.87	-0.7
4,859,571	-		GFF4872	0.87	-0.6
4,859,571	-		GFF4872	0.87	-0.8
4,859,591	+		GFF4872	0.88	+0.3
4,859,599	-		GFF4872	0.89	+1.0
4,859,604	+		GFF4872	0.89	+0.6
4,859,604	+		GFF4872	0.89	-1.0
4,859,604	+		GFF4872	0.89	-0.7
4,859,604	+		GFF4872	0.89	-2.0
4,859,604	+		GFF4872	0.89	-0.2
4,859,604	+		GFF4872	0.89	+1.0
4,859,604	+		GFF4872	0.89	-0.2
4,859,607	+		GFF4872	0.89	+0.5
4,859,610	+		GFF4872	0.89	-0.9
4,859,612	-		GFF4872	0.89	-0.6
4,859,612	-		GFF4872	0.89	+0.0
4,859,612	-		GFF4872	0.89	+0.1
4,859,612	-		GFF4872	0.89	-1.0
4,859,612	-		GFF4872	0.89	-0.9
4,859,612	-		GFF4872	0.89	-1.9
4,859,613	-		GFF4872	0.89	+0.3
4,859,621	-		GFF4872	0.90	-0.9
4,859,626	-				-1.3
4,859,646	-				+0.2
4,859,648	+				-0.5
4,859,648	-				+0.2
4,859,649	+				-0.4
4,859,658	+				+1.8
4,859,658	+				+0.1
4,859,658	+				-0.5
4,859,658	+				-0.4
4,859,658	+				+0.0
4,859,663	+				-0.6
4,859,666	-				-0.1
4,859,666	-				-1.7
4,859,666	-				-1.5
4,859,666	-				-0.1
4,859,666	-				-0.5
4,859,666	-				-1.5
4,859,666	-				+0.5
4,859,666	-				-0.1
4,859,666	-				+0.3
4,859,667	-				-1.1
4,859,676	-				-0.2
4,859,676	-				+1.3
4,859,676	-				-1.3
4,859,681	+				-0.1
4,859,681	+				+0.2
4,859,681	+				-2.0
4,859,689	-				-0.9
4,859,689	-				-1.7
4,859,689	-				-0.2
4,859,691	+				+0.0
4,859,694	-				-0.3
4,859,699	-				-1.2
4,859,709	-				+0.8
4,859,713	+				-0.4
4,859,713	+				-0.7
4,859,721	-				-1.0
4,859,721	-				-2.0
4,859,721	-				-1.4
4,859,721	-				+0.1
4,859,721	-				-0.5
4,859,726	+				+1.6
4,859,750	+				-0.9
4,859,758	-				-0.9
4,859,767	+				+0.8
4,859,767	+				+1.5
4,859,767	+				+0.5
4,859,777	-				-0.7
4,859,777	-				-0.6
4,859,787	-				-1.1
4,859,792	-				-0.8
4,859,792	-				+0.0
4,859,792	-				-0.1
4,859,957	+		GFF4873	0.32	-1.1
4,859,965	-		GFF4873	0.34	-0.6
4,859,970	-		GFF4873	0.35	+1.6
4,859,992	-		GFF4873	0.40	+0.9
4,860,026	-		GFF4873	0.49	+0.1
4,860,036	-		GFF4873	0.51	+1.0
4,860,036	-		GFF4873	0.51	-0.7
4,860,039	+		GFF4873	0.52	-1.5
4,860,047	-		GFF4873	0.54	-1.2
4,860,088	-		GFF4873	0.64	+0.8
4,860,094	-		GFF4873	0.66	-0.2
4,860,111	+		GFF4873	0.70	+0.2
4,860,119	-		GFF4873	0.72	-0.3
4,860,130	+		GFF4873	0.75	+0.0
4,860,131	+		GFF4873	0.75	-1.4
4,860,139	-		GFF4873	0.77	+0.1
4,860,141	+		GFF4873	0.77	-2.1
4,860,151	+		GFF4873	0.80	-1.5
4,860,154	+		GFF4873	0.81	-2.5
4,860,167	+		GFF4873	0.84	+0.9
4,860,175	-		GFF4873	0.86	-1.3
4,860,175	-		GFF4873	0.86	-1.9
4,860,175	-		GFF4873	0.86	-1.5
4,860,204	+				+1.3
4,860,209	+				-1.8
4,860,217	-				+0.4
4,860,219	+				-0.7
4,860,219	+				-0.1
4,860,219	+				-0.0
4,860,219	+				-0.5
4,860,222	-				-0.7
4,860,222	-				+0.5
4,860,225	-				+0.9
4,860,227	-				+0.8
4,860,227	-				-0.7
4,860,232	-				-0.8
4,860,249	+				-2.0
4,860,249	+				-0.4
4,860,249	+				-0.1
4,860,249	+				-0.8
4,860,257	-				-0.3
4,860,257	-				-1.0
4,860,257	-				-0.6
4,860,257	-				+0.7
4,860,257	-				+1.3
4,860,257	-				-1.0
4,860,257	-				+0.1
4,860,288	+				+0.7
4,860,289	-				-0.4
4,860,291	-				-0.3
4,860,305	+				-1.7
4,860,315	+		GFF4874	0.12	-0.2
4,860,318	-		GFF4874	0.13	-0.3
4,860,323	-		GFF4874	0.14	-1.5
4,860,330	+		GFF4874	0.16	+0.6
4,860,330	-		GFF4874	0.16	-0.4
4,860,330	-		GFF4874	0.16	-0.1
4,860,341	-		GFF4874	0.19	-0.9
4,860,377	-		GFF4874	0.28	-1.5
4,860,411	-		GFF4874	0.36	-2.5
4,860,416	+		GFF4874	0.38	-0.0
4,860,416	+		GFF4874	0.38	+0.7
4,860,416	+		GFF4874	0.38	-0.9
4,860,418	+		GFF4874	0.38	-0.2
4,860,424	-		GFF4874	0.40	-0.3
4,860,426	-		GFF4874	0.40	+0.1
4,860,426	-		GFF4874	0.40	-2.0
4,860,461	-		GFF4874	0.49	+0.9
4,860,487	+		GFF4874	0.55	-1.0
4,860,487	+		GFF4874	0.55	-1.0
4,860,492	+		GFF4874	0.56	-0.2
4,860,492	+		GFF4874	0.56	-0.4
4,860,492	+		GFF4874	0.56	+0.6
4,860,492	+		GFF4874	0.56	+0.8
4,860,492	+		GFF4874	0.56	-0.7
4,860,500	-		GFF4874	0.58	-0.1
4,860,500	-		GFF4874	0.58	+0.3
4,860,500	-		GFF4874	0.58	+1.4
4,860,546	+		GFF4874	0.70	-0.2
4,860,554	-		GFF4874	0.72	-1.8
4,860,554	-		GFF4874	0.72	-0.8
4,860,554	-		GFF4874	0.72	-0.6
4,860,554	-		GFF4874	0.72	-1.8
4,860,554	-		GFF4874	0.72	+0.1
4,860,559	+		GFF4874	0.73	-0.7
4,860,574	+		GFF4874	0.77	-0.5
4,860,584	-		GFF4874	0.79	-0.6
4,860,602	-		GFF4874	0.84	-0.5
4,860,611	+		GFF4874	0.86	-2.9
4,860,611	+		GFF4874	0.86	+0.1
4,860,611	+		GFF4874	0.86	-1.9
4,860,619	-		GFF4874	0.88	+1.1
4,860,619	-		GFF4874	0.88	-1.5
4,860,619	-		GFF4874	0.88	-0.7
4,860,619	-		GFF4874	0.88	-1.4
4,860,644	+				-0.5
4,860,644	+				+0.0
4,860,644	+				+1.0
4,860,644	+				-0.2
4,860,644	+				-0.7
4,860,644	+				+0.9
4,860,644	+				+0.0
4,860,652	-				+0.2
4,860,652	-				-0.5
4,860,652	-				-1.0
4,860,652	-				+0.5
4,860,652	-				-1.7
4,860,661	+				+0.4
4,860,663	+				+0.6
4,860,676	+				-0.2
4,860,705	+				+0.5
4,860,705	+				-0.5
4,860,705	+				-2.0
4,860,727	+				-1.1
4,860,727	+				-0.9
4,860,732	+				-1.1
4,860,732	+				-0.3
4,860,732	+				+0.2
4,860,732	+				+0.1
4,860,735	-				-0.4
4,860,736	+				-0.1
4,860,737	+				-2.2
4,860,737	+				-1.1
4,860,740	-				+0.6
4,860,740	-				+0.8
4,860,741	+				-0.4
4,860,745	-				+0.5
4,860,751	+				-2.0
4,860,751	+				+0.2
4,860,758	+				+0.2
4,860,759	-				+0.2
4,860,765	-				+0.6
4,860,771	+				-1.0
4,860,772	-				-0.6
4,860,773	-				+0.0
4,860,773	-				+0.9
4,860,775	+				-0.0
4,860,775	+				-2.9
4,860,781	-				-0.0
4,860,783	-				-0.3
4,860,788	-				-1.8
4,860,809	+				-1.9
4,860,809	+				-1.8
4,860,809	+				-0.0
4,860,809	+				+0.5
4,860,809	+				-0.5
4,860,809	+				-0.4
4,860,814	+				-0.2
4,860,814	+				+0.2
4,860,814	+				-0.2
4,860,814	+				+0.8
4,860,814	+				-0.8
4,860,816	+				-2.0
4,860,817	-				-2.2
4,860,817	-				+0.2
4,860,817	-				-1.8
4,860,817	-				-0.1
4,860,817	-				-0.9
4,860,822	-				-0.9
4,860,822	-				-0.4
4,860,822	-				+0.1
4,860,822	-				-0.9
4,860,833	+				+1.4
4,860,833	+				+0.5
4,860,841	-				-0.7
4,860,841	-				+0.4
4,860,854	-				+0.1
4,860,856	+				-1.9
4,860,874	+				+0.1
4,860,882	-		GFF4875	0.10	-2.0
4,860,909	+		GFF4875	0.12	+0.2
4,860,927	+		GFF4875	0.13	-1.1
4,860,927	+		GFF4875	0.13	-1.3
4,860,927	-		GFF4875	0.13	-0.5
4,860,928	+		GFF4875	0.13	-0.5
4,860,931	+		GFF4875	0.13	-3.1
4,860,941	-		GFF4875	0.13	-0.8
4,861,007	-		GFF4875	0.17	+0.5
4,861,011	-		GFF4875	0.17	-1.3
4,861,037	-		GFF4875	0.19	-1.1
4,861,039	+		GFF4875	0.19	-1.0
4,861,042	-		GFF4875	0.19	-2.9
4,861,060	+		GFF4875	0.20	-0.8
4,861,063	-		GFF4875	0.20	+0.5
4,861,068	-		GFF4875	0.20	-0.0
4,861,072	-		GFF4875	0.21	-0.0
4,861,074	-		GFF4875	0.21	+0.5
4,861,074	-		GFF4875	0.21	+0.2
4,861,087	-		GFF4875	0.22	+0.1
4,861,091	+		GFF4875	0.22	-0.4
4,861,091	+		GFF4875	0.22	+0.4
4,861,117	+		GFF4875	0.23	+1.3
4,861,124	-		GFF4875	0.24	-2.2
4,861,125	-		GFF4875	0.24	-0.7
4,861,125	-		GFF4875	0.24	-0.8
4,861,125	-		GFF4875	0.24	-1.5
4,861,126	+		GFF4875	0.24	-0.6
4,861,126	+		GFF4875	0.24	+0.1
4,861,126	+		GFF4875	0.24	-1.0
4,861,126	-		GFF4875	0.24	-2.0
4,861,126	-		GFF4875	0.24	-0.9
4,861,134	-		GFF4875	0.24	-0.0
4,861,134	-		GFF4875	0.24	+0.7
4,861,146	+		GFF4875	0.25	-1.0
4,861,185	+		GFF4875	0.27	-0.3
4,861,185	+		GFF4875	0.27	-1.4
4,861,213	+		GFF4875	0.29	-0.7
4,861,213	+		GFF4875	0.29	-0.7
4,861,213	+		GFF4875	0.29	-0.6
4,861,213	+		GFF4875	0.29	-0.3
4,861,213	+		GFF4875	0.29	+0.6
4,861,213	+		GFF4875	0.29	-0.6
4,861,213	+		GFF4875	0.29	+0.6
4,861,213	+		GFF4875	0.29	-2.0
4,861,213	+		GFF4875	0.29	+0.5
4,861,213	-		GFF4875	0.29	-1.1
4,861,214	-		GFF4875	0.29	-0.8
4,861,221	-		GFF4875	0.29	+0.2
4,861,221	-		GFF4875	0.29	-0.4
4,861,221	-		GFF4875	0.29	-1.4
4,861,221	-		GFF4875	0.29	+0.0
4,861,221	-		GFF4875	0.29	+0.2
4,861,231	-		GFF4875	0.30	-0.9
4,861,252	+		GFF4875	0.31	+1.4
4,861,252	+		GFF4875	0.31	-0.7
4,861,277	-		GFF4875	0.32	-0.2
4,861,300	+		GFF4875	0.34	-3.0
4,861,300	-		GFF4875	0.34	-1.5
4,861,315	+		GFF4875	0.34	-1.7
4,861,331	+		GFF4875	0.35	-0.2
4,861,336	-		GFF4875	0.36	+0.3
4,861,337	+		GFF4875	0.36	-0.1
4,861,362	-		GFF4875	0.37	-0.2
4,861,401	-		GFF4875	0.39	-2.0
4,861,407	-		GFF4875	0.40	-0.7
4,861,423	-		GFF4875	0.40	-0.4
4,861,425	+		GFF4875	0.41	-2.4
4,861,425	+		GFF4875	0.41	-0.3
4,861,425	+		GFF4875	0.41	-0.4
4,861,444	+		GFF4875	0.42	-1.1
4,861,444	-		GFF4875	0.42	-1.3
4,861,470	+		GFF4875	0.43	+0.1
4,861,470	+		GFF4875	0.43	+0.5
4,861,470	+		GFF4875	0.43	-1.4
4,861,470	+		GFF4875	0.43	-1.7
4,861,470	+		GFF4875	0.43	+0.5
4,861,478	-		GFF4875	0.44	-1.8
4,861,478	-		GFF4875	0.44	+0.2
4,861,478	-		GFF4875	0.44	+0.3
4,861,478	-		GFF4875	0.44	+0.1
4,861,478	-		GFF4875	0.44	-0.1
4,861,518	-		GFF4875	0.46	-0.9
4,861,520	+		GFF4875	0.46	-0.3
4,861,520	+		GFF4875	0.46	+1.2
4,861,523	-		GFF4875	0.46	-1.0
4,861,528	-		GFF4875	0.46	-0.1
4,861,543	-		GFF4875	0.47	-0.9
4,861,554	+		GFF4875	0.48	+0.8
4,861,560	+		GFF4875	0.48	-0.1
4,861,569	-		GFF4875	0.49	-0.1
4,861,579	+		GFF4875	0.49	-0.8
4,861,588	+		GFF4875	0.50	+0.8
4,861,593	+		GFF4875	0.50	-2.0
4,861,613	+		GFF4875	0.51	+0.9
4,861,613	+		GFF4875	0.51	-1.2
4,861,621	-		GFF4875	0.52	+0.6
4,861,621	-		GFF4875	0.52	-1.5
4,861,627	+		GFF4875	0.52	-0.2
4,861,627	+		GFF4875	0.52	-1.0
4,861,627	+		GFF4875	0.52	+0.3
4,861,627	+		GFF4875	0.52	+1.1
4,861,627	+		GFF4875	0.52	+1.8
4,861,627	+		GFF4875	0.52	+0.5
4,861,635	-		GFF4875	0.52	-0.8
4,861,635	-		GFF4875	0.52	-0.4
4,861,635	-		GFF4875	0.52	-0.5
4,861,635	-		GFF4875	0.52	-2.1
4,861,635	-		GFF4875	0.52	-0.8
4,861,635	-		GFF4875	0.52	-2.2
4,861,635	-		GFF4875	0.52	+0.5
4,861,635	-		GFF4875	0.52	-0.0