Strain Fitness in Sphingobium sp. HT1-2 around GFF4763

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,759,185	+		GFF4761	0.37	-0.7
4,759,185	+		GFF4761	0.37	-1.3
4,759,186	+		GFF4761	0.37	-0.5
4,759,186	+		GFF4761	0.37	+0.4
4,759,189	-		GFF4761	0.38	-0.8
4,759,194	-		GFF4761	0.39	+0.2
4,759,198	-		GFF4761	0.39	-0.4
4,759,224	-		GFF4761	0.43	-0.3
4,759,241	+		GFF4761	0.45	-1.1
4,759,241	+		GFF4761	0.45	-0.5
4,759,241	+		GFF4761	0.45	-0.7
4,759,242	+		GFF4761	0.45	-1.8
4,759,249	-		GFF4761	0.46	-0.8
4,759,249	-		GFF4761	0.46	-0.6
4,759,249	-		GFF4761	0.46	-1.6
4,759,263	+		GFF4761	0.48	+0.4
4,759,263	+		GFF4761	0.48	-0.3
4,759,270	+		GFF4761	0.49	-1.6
4,759,271	-		GFF4761	0.49	-2.9
4,759,276	+		GFF4761	0.50	-0.8
4,759,276	+		GFF4761	0.50	-0.8
4,759,278	-		GFF4761	0.50	+0.9
4,759,278	-		GFF4761	0.50	-0.1
4,759,281	+		GFF4761	0.50	-1.9
4,759,283	-		GFF4761	0.50	-2.7
4,759,283	-		GFF4761	0.50	-1.8
4,759,285	+		GFF4761	0.51	-0.5
4,759,318	+		GFF4761	0.55	-2.1
4,759,318	+		GFF4761	0.55	-0.2
4,759,320	+		GFF4761	0.55	-0.4
4,759,374	-		GFF4761	0.63	-0.7
4,759,419	-		GFF4761	0.69	-0.6
4,759,421	+		GFF4761	0.69	+0.1
4,759,428	+		GFF4761	0.70	-0.0
4,759,428	+		GFF4761	0.70	-1.9
4,759,429	-		GFF4761	0.70	-0.3
4,759,433	+		GFF4761	0.71	-0.3
4,759,446	+		GFF4761	0.72	-0.4
4,759,457	+		GFF4761	0.74	-0.4
4,759,500	+		GFF4761	0.80	-0.2
4,759,504	+		GFF4761	0.80	+0.9
4,759,521	-		GFF4761	0.82	-0.6
4,759,523	+		GFF4761	0.83	-1.0
4,759,523	+		GFF4761	0.83	+0.5
4,759,540	-		GFF4761	0.85	-0.4
4,759,572	+		GFF4761	0.89	-0.8
4,759,573	-		GFF4761	0.89	+0.3
4,759,588	-				-1.0
4,759,608	+				-3.2
4,759,608	+				-0.3
4,759,608	+				-3.1
4,759,608	+				-3.0
4,759,613	+				-1.8
4,759,618	+				+0.3
4,759,618	+				-0.1
4,759,618	+				-0.5
4,759,618	+				-0.3
4,759,626	-				-0.2
4,759,647	-				-0.9
4,759,657	-				-2.6
4,759,662	+				+0.1
4,759,664	+				-0.8
4,759,672	-				-1.4
4,759,672	-				+0.2
4,759,672	-				-1.8
4,759,677	-				-0.3
4,759,682	+				+0.1
4,759,682	+				-0.7
4,759,686	+				-1.2
4,759,691	+				-1.2
4,759,691	+				-1.0
4,759,691	+				-2.2
4,759,691	+				-1.2
4,759,694	-				-1.1
4,759,696	+				-1.5
4,759,699	-				-0.8
4,759,700	-				-1.0
4,759,700	-				-1.5
4,759,704	-				-0.7
4,759,704	-				-0.3
4,759,717	+				-1.8
4,759,717	+				+0.3
4,759,725	-				-0.8
4,759,725	-				+0.5
4,759,725	-				+0.2
4,759,743	+				-0.0
4,759,751	-				+0.1
4,759,769	-		GFF4762	0.14	-0.6
4,759,769	-		GFF4762	0.14	-1.9
4,759,769	-		GFF4762	0.14	-2.0
4,759,791	+		GFF4762	0.20	-0.8
4,759,796	+		GFF4762	0.22	-1.8
4,759,809	+		GFF4762	0.25	-0.8
4,759,809	+		GFF4762	0.25	-1.0
4,759,809	+		GFF4762	0.25	-0.5
4,759,833	+		GFF4762	0.32	-0.9
4,759,838	+		GFF4762	0.34	-1.9
4,759,841	-		GFF4762	0.34	-1.0
4,759,841	-		GFF4762	0.34	-1.7
4,759,854	-		GFF4762	0.38	-1.2
4,759,856	-		GFF4762	0.39	-0.2
4,759,914	+		GFF4762	0.55	-1.2
4,759,937	+		GFF4762	0.62	-0.4
4,759,938	-		GFF4762	0.62	-0.0
4,759,965	-		GFF4762	0.70	-0.4
4,759,971	-		GFF4762	0.72	-0.7
4,759,972	-		GFF4762	0.72	-0.2
4,759,986	+		GFF4762	0.76	-1.5
4,759,989	-		GFF4762	0.77	-0.3
4,759,991	+		GFF4762	0.77	-2.1
4,759,991	+		GFF4762	0.77	+1.1
4,759,991	+		GFF4762	0.77	-0.8
4,759,991	+		GFF4762	0.77	-1.3
4,759,994	-		GFF4762	0.78	-0.2
4,759,999	-		GFF4762	0.79	-2.5
4,759,999	-		GFF4762	0.79	-1.9
4,759,999	-		GFF4762	0.79	-0.9
4,759,999	-		GFF4762	0.79	-0.7
4,759,999	-		GFF4762	0.79	-0.1
4,759,999	-		GFF4762	0.79	-0.3
4,759,999	-		GFF4762	0.79	-1.3
4,759,999	-		GFF4762	0.79	-0.8
4,759,999	-		GFF4762	0.79	-0.8
4,760,000	-		GFF4762	0.80	-1.3
4,760,007	-		GFF4762	0.82	-2.4
4,760,012	-		GFF4762	0.83	-0.5
4,760,026	+		GFF4762	0.87	-0.8
4,760,031	+		GFF4762	0.89	-0.3
4,760,033	+		GFF4762	0.89	+0.1
4,760,034	-		GFF4762	0.89	-0.7
4,760,039	+				-0.0
4,760,039	-				-1.4
4,760,039	-				-1.5
4,760,039	-				-1.1
4,760,039	-				-1.4
4,760,040	+				-1.2
4,760,041	+				-1.1
4,760,048	-				-0.2
4,760,050	+				-1.1
4,760,058	-				-0.0
4,760,058	-				+0.9
4,760,058	-				-0.9
4,760,063	-				-1.7
4,760,105	+				-0.4
4,760,110	+				+0.5
4,760,110	+				-0.6
4,760,110	+				-1.0
4,760,111	+				+0.1
4,760,111	+				-2.2
4,760,118	-				-1.4
4,760,118	-				+1.0
4,760,119	-				-1.2
4,760,119	-				+0.1
4,760,119	-				-0.5
4,760,119	-				-0.4
4,760,124	-				-1.3
4,760,129	+				-2.0
4,760,139	+				-1.0
4,760,141	-				-2.5
4,760,141	-				-2.3
4,760,148	+				-1.3
4,760,155	-				-2.1
4,760,183	+				-0.6
4,760,188	+				+0.4
4,760,196	+				-0.5
4,760,196	-				-0.6
4,760,201	-				-0.9
4,760,225	+				-0.7
4,760,225	+				-0.1
4,760,225	+				-0.5
4,760,239	+				-1.1
4,760,256	-		GFF4763	0.11	-0.7
4,760,257	-		GFF4763	0.11	-1.2
4,760,258	+		GFF4763	0.11	-0.6
4,760,269	+		GFF4763	0.12	-0.1
4,760,294	+		GFF4763	0.15	-1.0
4,760,302	+		GFF4763	0.16	-0.4
4,760,302	+		GFF4763	0.16	+0.4
4,760,302	+		GFF4763	0.16	-1.9
4,760,304	+		GFF4763	0.16	-0.6
4,760,305	-		GFF4763	0.16	-1.0
4,760,310	-		GFF4763	0.17	-0.5
4,760,310	-		GFF4763	0.17	-3.0
4,760,312	-		GFF4763	0.17	-1.3
4,760,323	+		GFF4763	0.18	+0.4
4,760,389	+		GFF4763	0.26	-0.4
4,760,431	+		GFF4763	0.31	-0.7
4,760,472	+		GFF4763	0.36	-2.6
4,760,480	-		GFF4763	0.36	-0.0
4,760,493	+		GFF4763	0.38	-1.0
4,760,549	+		GFF4763	0.44	-1.8
4,760,562	-		GFF4763	0.46	-0.6
4,760,595	+		GFF4763	0.50	+1.4
4,760,595	+		GFF4763	0.50	-1.3
4,760,603	-		GFF4763	0.51	-1.5
4,760,623	+		GFF4763	0.53	-1.8
4,760,623	+		GFF4763	0.53	-1.1
4,760,623	+		GFF4763	0.53	-1.3
4,760,631	-		GFF4763	0.54	-0.8
4,760,631	-		GFF4763	0.54	-1.7
4,760,646	+		GFF4763	0.56	+0.1
4,760,660	+		GFF4763	0.57	-1.2
4,760,666	+		GFF4763	0.58	-1.3
4,760,669	+		GFF4763	0.58	-0.2
4,760,674	+		GFF4763	0.59	-0.8
4,760,677	-		GFF4763	0.59	+0.2
4,760,677	-		GFF4763	0.59	-0.6
4,760,682	-		GFF4763	0.60	-1.7
4,760,682	-		GFF4763	0.60	-0.5
4,760,695	-		GFF4763	0.61	-0.2
4,760,700	-		GFF4763	0.62	+0.1
4,760,747	+		GFF4763	0.67	-0.3
4,760,768	+		GFF4763	0.70	-0.5
4,760,776	-		GFF4763	0.70	-1.3
4,760,811	-		GFF4763	0.74	-0.1
4,760,842	+		GFF4763	0.78	-0.5
4,760,847	+		GFF4763	0.79	-2.5
4,760,852	+		GFF4763	0.79	-2.0
4,760,860	-		GFF4763	0.80	-1.5
4,760,921	+		GFF4763	0.87	-0.7
4,760,938	-		GFF4763	0.89	-0.6
4,760,944	+		GFF4763	0.90	-1.8
4,760,952	+				-0.6
4,760,953	+				-1.1
4,760,954	+				-0.1
4,760,960	+				-2.7
4,760,982	+				-1.8
4,760,987	+				-1.7
4,760,990	-				+0.0
4,760,995	-				+0.1
4,760,995	-				-1.6
4,761,001	-				+0.4
4,761,003	+				-2.9
4,761,011	-				+0.7
4,761,011	-				-0.6
4,761,019	+				-0.4
4,761,026	+				-0.5
4,761,026	+				-0.3
4,761,026	+				-2.0
4,761,027	-				-1.7
4,761,063	+				-0.3
4,761,071	-				-2.4
4,761,071	-				+0.1
4,761,080	-				-0.7
4,761,122	+				-2.6
4,761,129	+				-2.0
4,761,129	+				-4.5
4,761,138	+				-1.6
4,761,141	+				-3.9
4,761,156	-				-2.5
4,761,156	-				-0.8
4,761,176	-				-2.5
4,761,180	+				-2.9
4,761,188	-				-4.2
4,761,188	-				-1.2
4,761,232	-		GFF4764	0.10	-1.8
4,761,239	-		GFF4764	0.11	-2.4
4,761,277	-		GFF4764	0.14	-2.1
4,761,289	-		GFF4764	0.14	-2.4
4,761,324	-		GFF4764	0.17	-2.3
4,761,324	-		GFF4764	0.17	-0.5
4,761,332	-		GFF4764	0.18	-2.9
4,761,362	+		GFF4764	0.20	-1.9
4,761,388	-		GFF4764	0.22	-2.2
4,761,388	-		GFF4764	0.22	-1.6
4,761,393	+		GFF4764	0.22	-2.2
4,761,393	+		GFF4764	0.22	-1.7
4,761,393	+		GFF4764	0.22	-2.4
4,761,410	+		GFF4764	0.23	-1.7
4,761,411	+		GFF4764	0.23	-1.9
4,761,411	-		GFF4764	0.23	-1.4
4,761,416	-		GFF4764	0.24	-2.5
4,761,416	-		GFF4764	0.24	-3.1
4,761,437	-		GFF4764	0.25	-3.6
4,761,439	+		GFF4764	0.25	-1.5
4,761,441	+		GFF4764	0.25	-2.7
4,761,442	-		GFF4764	0.25	-3.1
4,761,447	-		GFF4764	0.26	-1.9
4,761,449	-		GFF4764	0.26	-1.8
4,761,452	+		GFF4764	0.26	-2.5
4,761,469	+		GFF4764	0.27	-2.9
4,761,477	-		GFF4764	0.28	-3.2
4,761,493	-		GFF4764	0.29	-3.2
4,761,494	-		GFF4764	0.29	-0.8
4,761,496	+		GFF4764	0.29	-2.9
4,761,519	+		GFF4764	0.31	-3.1
4,761,551	+		GFF4764	0.33	-3.4
4,761,567	-		GFF4764	0.34	-2.0
4,761,567	-		GFF4764	0.34	-2.0
4,761,588	+		GFF4764	0.36	-3.1
4,761,588	+		GFF4764	0.36	-2.7
4,761,588	+		GFF4764	0.36	-2.0
4,761,588	+		GFF4764	0.36	-0.1
4,761,596	-		GFF4764	0.36	-2.1
4,761,596	-		GFF4764	0.36	-3.8
4,761,596	-		GFF4764	0.36	-2.0
4,761,596	-		GFF4764	0.36	-2.9
4,761,596	-		GFF4764	0.36	-3.7
4,761,598	+		GFF4764	0.37	-2.1
4,761,598	+		GFF4764	0.37	-2.3
4,761,598	+		GFF4764	0.37	-1.8
4,761,606	-		GFF4764	0.37	-2.3
4,761,619	-		GFF4764	0.38	-3.0
4,761,634	-		GFF4764	0.39	-2.4
4,761,644	-		GFF4764	0.40	-1.3
4,761,644	-		GFF4764	0.40	-2.9
4,761,644	-		GFF4764	0.40	-3.1
4,761,644	-		GFF4764	0.40	-3.0
4,761,699	-		GFF4764	0.44	-2.7
4,761,701	+		GFF4764	0.44	-0.9
4,761,772	-		GFF4764	0.49	-0.8
4,761,814	-		GFF4764	0.52	-2.5
4,761,827	+		GFF4764	0.53	-3.0
4,761,850	-		GFF4764	0.55	-2.3
4,761,852	+		GFF4764	0.55	-4.0
4,761,875	-		GFF4764	0.56	-1.9
4,761,875	-		GFF4764	0.56	-1.7
4,761,879	+		GFF4764	0.57	-2.2
4,761,887	-		GFF4764	0.57	-2.2
4,761,898	-		GFF4764	0.58	-2.1
4,761,911	+		GFF4764	0.59	-2.9
4,761,926	+		GFF4764	0.60	-2.7
4,761,926	+		GFF4764	0.60	-2.0
4,761,926	+		GFF4764	0.60	-1.6
4,761,926	+		GFF4764	0.60	-2.2
4,761,926	+		GFF4764	0.60	-1.6
4,761,926	+		GFF4764	0.60	-1.8
4,761,926	+		GFF4764	0.60	-1.8
4,761,932	-		GFF4764	0.60	-2.0
4,761,934	-		GFF4764	0.61	-3.1
4,761,942	-		GFF4764	0.61	-1.6
4,762,015	-		GFF4764	0.66	-2.7