Strain Fitness in Sphingobium sp. HT1-2 around GFF4652

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,649,917	-				-0.9
4,649,934	-				-0.4
4,649,953	-				-0.8
4,649,978	-				-2.1
4,649,982	+				+0.5
4,649,982	+				+1.2
4,649,982	+				+0.5
4,649,990	-				+1.0
4,649,990	-				-0.9
4,649,990	-				+1.4
4,649,990	-				+0.8
4,649,990	-				-1.1
4,649,990	-				+0.2
4,649,990	-				+0.3
4,649,990	-				+0.8
4,649,990	-				-0.7
4,649,991	-				-0.5
4,649,995	+				+0.8
4,650,021	-				+0.7
4,650,021	-				-0.2
4,650,032	+				-2.4
4,650,047	+				+0.7
4,650,047	+				-1.4
4,650,055	-				-0.5
4,650,069	+				-1.3
4,650,074	+				+0.3
4,650,082	-				-0.9
4,650,082	-				+0.7
4,650,082	-				+0.0
4,650,084	+				-0.4
4,650,084	+				-0.6
4,650,084	+				-1.4
4,650,084	+				-2.1
4,650,084	+				-0.5
4,650,084	+				-0.1
4,650,098	+				-1.9
4,650,173	+				-0.5
4,650,186	+				-0.7
4,650,192	-				-0.9
4,650,197	-				-1.5
4,650,231	-				-0.6
4,650,243	-				-2.0
4,650,243	-				-1.2
4,650,558	+				+0.1
4,650,573	+				-0.3
4,650,591	+				+0.5
4,650,637	-				+0.2
4,650,639	-				+0.1
4,650,648	+				+1.1
4,650,656	-				-1.3
4,650,656	-				+0.7
4,650,656	-				-1.7
4,650,667	+				+1.0
4,650,670	+				-1.5
4,650,675	+				-1.0
4,650,675	-				+1.2
4,650,675	-				-0.2
4,650,677	+				-0.9
4,650,681	+				+1.2
4,650,681	+				+0.1
4,650,687	+				-0.1
4,650,689	-				-0.5
4,650,689	-				-0.3
4,650,689	-				+0.3
4,650,705	-				+0.1
4,650,720	-				-1.3
4,650,722	-				-0.4
4,650,724	+				+0.7
4,650,728	-				-0.7
4,650,760	+				-0.4
4,650,781	-				-0.9
4,650,801	-				-1.3
4,650,809	+				+0.4
4,650,815	+				-1.3
4,650,816	-				+0.2
4,650,831	+				-0.0
4,650,849	+				-1.4
4,650,849	-				-0.7
4,650,849	-				+0.3
4,650,857	-				+0.1
4,650,870	+				-0.1
4,650,880	-				-0.7
4,650,884	-				+0.0
4,650,889	-				+0.2
4,650,889	-				-1.9
4,650,889	-				+1.6
4,650,912	+				-1.5
4,650,912	+				+0.3
4,650,917	+				-2.8
4,650,917	+				-0.2
4,650,917	+				-0.7
4,650,917	+				+0.4
4,650,917	+				-1.3
4,650,917	+				-1.1
4,650,917	+				+0.6
4,650,917	+				-0.1
4,650,917	+				-2.0
4,650,917	+				+0.1
4,650,917	+				-0.1
4,650,925	-				+0.1
4,650,925	-				+0.1
4,650,925	-				-2.6
4,650,925	-				-1.0
4,650,925	-				-2.0
4,650,925	-				+0.3
4,650,925	-				-0.6
4,650,925	-				-2.1
4,650,925	-				-2.3
4,650,925	-				-0.3
4,650,925	-				-0.0
4,650,925	-				-0.0
4,650,925	-				-0.0
4,650,925	-				-0.4
4,650,925	-				+0.2
4,650,925	-				+0.3
4,650,925	-				-1.0
4,650,958	+		GFF4652	0.12	-0.5
4,650,985	-		GFF4652	0.17	+0.2
4,650,994	-		GFF4652	0.18	-1.9
4,651,002	-		GFF4652	0.19	-0.2
4,651,021	-		GFF4652	0.22	+1.0
4,651,023	-		GFF4652	0.23	-1.1
4,651,042	-		GFF4652	0.26	+0.3
4,651,055	+		GFF4652	0.28	+0.3
4,651,055	+		GFF4652	0.28	+0.5
4,651,055	+		GFF4652	0.28	-0.2
4,651,061	+		GFF4652	0.29	+0.6
4,651,062	+		GFF4652	0.29	+0.3
4,651,063	-		GFF4652	0.29	-1.1
4,651,069	-		GFF4652	0.30	-1.4
4,651,102	+		GFF4652	0.35	+1.7
4,651,104	+		GFF4652	0.36	-1.8
4,651,148	+		GFF4652	0.43	+0.9
4,651,148	+		GFF4652	0.43	-0.2
4,651,148	-		GFF4652	0.43	-1.5
4,651,156	-		GFF4652	0.44	+0.7
4,651,171	+		GFF4652	0.46	-2.2
4,651,171	-		GFF4652	0.46	+0.3
4,651,189	-		GFF4652	0.49	+0.8
4,651,195	+		GFF4652	0.50	-0.2
4,651,195	+		GFF4652	0.50	-1.3
4,651,195	+		GFF4652	0.50	-0.0
4,651,196	+		GFF4652	0.50	+0.1
4,651,196	+		GFF4652	0.50	-0.0
4,651,196	+		GFF4652	0.50	-2.3
4,651,201	+		GFF4652	0.51	-0.2
4,651,201	+		GFF4652	0.51	-2.8
4,651,204	-		GFF4652	0.52	-0.9
4,651,204	-		GFF4652	0.52	-1.3
4,651,204	-		GFF4652	0.52	+0.5
4,651,204	-		GFF4652	0.52	+0.3
4,651,204	-		GFF4652	0.52	-0.0
4,651,204	-		GFF4652	0.52	-0.0
4,651,206	+		GFF4652	0.52	-0.6
4,651,206	+		GFF4652	0.52	+0.4
4,651,209	-		GFF4652	0.52	-0.3
4,651,211	-		GFF4652	0.53	-0.5
4,651,214	-		GFF4652	0.53	-2.0
4,651,214	-		GFF4652	0.53	-0.8
4,651,214	-		GFF4652	0.53	+0.6
4,651,214	-		GFF4652	0.53	-0.1
4,651,214	-		GFF4652	0.53	+0.7
4,651,214	-		GFF4652	0.53	+0.6
4,651,228	-		GFF4652	0.55	+0.5
4,651,241	+		GFF4652	0.57	-0.3
4,651,246	+		GFF4652	0.58	+0.4
4,651,246	+		GFF4652	0.58	-0.3
4,651,246	+		GFF4652	0.58	-0.6
4,651,246	+		GFF4652	0.58	-0.5
4,651,254	-		GFF4652	0.59	+0.3
4,651,254	-		GFF4652	0.59	-0.6
4,651,254	-		GFF4652	0.59	-0.8
4,651,254	-		GFF4652	0.59	-0.6
4,651,269	+		GFF4652	0.62	-1.6
4,651,289	+		GFF4652	0.65	-0.5
4,651,298	-		GFF4652	0.67	-1.1
4,651,310	+		GFF4652	0.68	-0.0
4,651,311	-		GFF4652	0.69	+0.8
4,651,319	+		GFF4652	0.70	-0.6
4,651,325	+		GFF4652	0.71	-0.4
4,651,330	+		GFF4652	0.72	-1.3
4,651,330	+		GFF4652	0.72	-3.1
4,651,330	+		GFF4652	0.72	-0.3
4,651,330	+		GFF4652	0.72	-0.5
4,651,330	+		GFF4652	0.72	-0.1
4,651,338	-		GFF4652	0.73	+1.0
4,651,338	-		GFF4652	0.73	-1.1
4,651,338	-		GFF4652	0.73	+0.3
4,651,358	+		GFF4652	0.76	-0.1
4,651,365	-		GFF4652	0.77	+0.5
4,651,375	+		GFF4652	0.79	-0.8
4,651,375	+		GFF4652	0.79	+0.9
4,651,399	+		GFF4652	0.83	-1.8
4,651,403	+		GFF4652	0.83	+0.1
4,651,435	+		GFF4652	0.88	+0.2
4,651,435	+		GFF4652	0.88	+0.2
4,651,435	+		GFF4652	0.88	+1.1
4,651,435	+		GFF4652	0.88	-0.3
4,651,435	+		GFF4652	0.88	+0.2
4,651,442	-		GFF4652	0.89	-0.4
4,651,443	-		GFF4652	0.90	+1.3
4,651,448	-				-1.0
4,651,459	-				-2.0
4,651,474	+				+0.4
4,651,474	+				-0.6
4,651,474	+				-0.3
4,651,483	-				-1.0
4,651,491	+				+0.5
4,651,496	+				-0.6
4,651,506	+				+1.0
4,651,517	+				-1.3
4,651,558	-				+0.2
4,651,560	+				+0.3
4,651,568	-				-2.6
4,651,568	-				-0.2
4,651,643	-		GFF4653	0.20	-1.4
4,651,645	-		GFF4653	0.20	+0.7
4,651,718	-		GFF4653	0.40	+0.0
4,651,761	+		GFF4653	0.52	+0.1
4,651,761	+		GFF4653	0.52	-1.3
4,651,769	-		GFF4653	0.54	+0.1
4,651,787	+		GFF4653	0.59	-1.7
4,651,787	+		GFF4653	0.59	-1.7
4,651,787	+		GFF4653	0.59	-0.4
4,651,787	+		GFF4653	0.59	+0.1
4,651,787	+		GFF4653	0.59	-2.0
4,651,789	+		GFF4653	0.59	-0.5
4,651,797	-		GFF4653	0.61	-1.3
4,651,797	-		GFF4653	0.61	+0.2
4,651,813	+		GFF4653	0.66	-1.4
4,651,813	+		GFF4653	0.66	+0.4
4,651,813	+		GFF4653	0.66	-0.5
4,651,813	+		GFF4653	0.66	-0.5
4,651,821	-		GFF4653	0.68	+0.2
4,651,821	-		GFF4653	0.68	+0.0
4,651,821	-		GFF4653	0.68	+1.8
4,651,843	+		GFF4653	0.74	-0.7
4,651,844	-		GFF4653	0.74	-0.3
4,651,869	-		GFF4653	0.81	-1.3
4,651,906	-				-0.8
4,651,906	-				-0.5
4,651,916	-				-0.4
4,651,916	-				+0.6
4,651,923	-				+0.6
4,651,923	-				-2.5
4,651,962	-				+0.4
4,651,970	+				+0.7
4,651,978	-				-1.7
4,651,978	-				-0.2
4,651,978	-				-0.9
4,651,982	+				-0.6
4,651,993	+				-3.0
4,651,993	+				+0.0
4,651,998	+				-0.1
4,651,998	+				+0.5
4,652,000	-				+0.8
4,652,000	-				+0.2
4,652,000	-				-0.1
4,652,001	-				+0.1
4,652,006	-				+0.4
4,652,006	-				-1.4
4,652,006	-				+0.6
4,652,008	+				-0.3
4,652,008	+				+0.3
4,652,008	+				-1.5
4,652,008	+				-2.7
4,652,014	+				+0.1
4,652,014	+				+0.4
4,652,014	+				+1.4
4,652,016	-				+0.7
4,652,016	-				-1.0
4,652,016	-				+1.8
4,652,016	-				-1.7
4,652,016	-				-1.3
4,652,016	-				-0.2
4,652,016	-				-0.5
4,652,016	-				-0.2
4,652,022	-				+1.4
4,652,022	-				+0.1
4,652,027	+				+0.4
4,652,049	+				-0.8
4,652,057	-				-1.9
4,652,066	+				-0.9
4,652,074	+				+0.1
4,652,074	+				-0.1
4,652,074	+				-1.6
4,652,074	+				-0.8
4,652,074	+				+0.0
4,652,077	-				+0.4
4,652,079	+				+0.0
4,652,079	+				+0.1
4,652,082	-				-0.1
4,652,082	-				-1.7
4,652,087	-				+0.6
4,652,087	-				+1.2
4,652,110	-				-1.0
4,652,121	-				+0.3
4,652,132	+				-2.3
4,652,140	-				+0.3
4,652,140	-				+0.6
4,652,166	-				+0.3
4,652,167	-				-2.6
4,652,184	+				+0.6
4,652,198	+				+1.0
4,652,198	+				-0.6
4,652,206	+				-2.4
4,652,206	-				-0.1
4,652,214	-				+0.6
4,652,218	+				-1.1
4,652,223	+				-1.4
4,652,224	+				+0.1
4,652,226	-				-0.7
4,652,237	+				-0.1
4,652,247	+				-1.0
4,652,247	+				+0.3
4,652,255	-				+0.6
4,652,272	-				-1.8
4,652,272	-				+0.8
4,652,274	+				+0.0
4,652,282	-				-1.6
4,652,284	+				-0.1
4,652,289	+				+1.1
4,652,290	+				+0.3
4,652,293	-				+0.7
4,652,295	+				-0.3
4,652,295	+				-0.6
4,652,295	+				+0.7
4,652,295	+				-1.1
4,652,295	+				+0.4
4,652,295	+				-1.8
4,652,295	+				+0.5
4,652,295	+				+0.1
4,652,303	-				+1.6
4,652,303	-				+0.4
4,652,303	-				-0.7
4,652,303	-				-1.5
4,652,308	-				-0.3
4,652,310	+				-1.1
4,652,310	+				+0.3
4,652,310	+				-0.5
4,652,310	+				+1.2
4,652,310	+				+0.8
4,652,311	+				-0.5
4,652,318	-				-1.3
4,652,318	-				-0.5
4,652,318	-				+0.1
4,652,319	-				+0.0
4,652,350	+				-1.8
4,652,358	-				-0.3
4,652,372	-				+0.6
4,652,374	-				+0.0
4,652,374	-				+0.1
4,652,374	-				-1.8
4,652,377	+				-0.6
4,652,384	+				-2.2
4,652,385	-				-0.7
4,652,385	-				-0.5
4,652,394	+				+0.4
4,652,394	+				-1.5
4,652,402	-				-2.0
4,652,402	-				-1.8
4,652,402	-				+1.1
4,652,402	-				-1.3
4,652,420	+				-2.0
4,652,420	+				+0.5
4,652,422	+				-1.8
4,652,422	+				-0.6
4,652,427	+				-1.3
4,652,428	-				+0.4
4,652,437	-				-0.9
4,652,466	+				+0.6
4,652,472	+				-0.0
4,652,476	+				-1.2
4,652,476	+				-1.3
4,652,476	+				-1.3
4,652,476	+				-1.4
4,652,476	+				-1.4
4,652,476	+				-1.0
4,652,476	+				+0.2
4,652,476	+				-0.4
4,652,476	+				-1.3
4,652,476	+				-0.7
4,652,480	-				-0.7
4,652,484	-				-0.1
4,652,484	-				-0.2
4,652,484	-				-0.6
4,652,484	-				+0.9
4,652,484	-				+0.3
4,652,484	-				-0.8
4,652,484	-				+0.6
4,652,484	-				-0.3