Strain Fitness in Sphingobium sp. HT1-2 around GFF4602

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,594,130	-		GFF4601	0.49	-1.2
4,594,140	-		GFF4601	0.50	-0.3
4,594,152	+		GFF4601	0.51	-0.3
4,594,152	+		GFF4601	0.51	-0.2
4,594,166	+		GFF4601	0.52	-0.6
4,594,174	-		GFF4601	0.52	-1.3
4,594,202	+		GFF4601	0.54	-0.1
4,594,218	-		GFF4601	0.55	-1.2
4,594,227	-		GFF4601	0.55	+1.6
4,594,279	-		GFF4601	0.59	-0.0
4,594,284	-		GFF4601	0.59	+1.3
4,594,304	+		GFF4601	0.60	-0.5
4,594,304	+		GFF4601	0.60	+0.0
4,594,308	+		GFF4601	0.61	+0.1
4,594,310	+		GFF4601	0.61	+0.3
4,594,316	-		GFF4601	0.61	-0.5
4,594,336	-		GFF4601	0.62	+1.5
4,594,369	+		GFF4601	0.64	+1.3
4,594,399	+		GFF4601	0.66	-1.8
4,594,424	+		GFF4601	0.68	-0.0
4,594,448	+		GFF4601	0.69	+0.1
4,594,455	+		GFF4601	0.70	-0.4
4,594,465	-		GFF4601	0.70	-1.0
4,594,475	+		GFF4601	0.71	+0.8
4,594,502	+		GFF4601	0.73	-0.5
4,594,513	-		GFF4601	0.73	+0.1
4,594,546	+		GFF4601	0.76	+0.9
4,594,546	+		GFF4601	0.76	+0.9
4,594,554	-		GFF4601	0.76	-0.4
4,594,554	-		GFF4601	0.76	-1.0
4,594,554	-		GFF4601	0.76	+0.7
4,594,571	-		GFF4601	0.77	-0.7
4,594,584	+		GFF4601	0.78	+1.1
4,594,584	+		GFF4601	0.78	-0.4
4,594,584	+		GFF4601	0.78	-0.4
4,594,592	-		GFF4601	0.78	+0.2
4,594,592	-		GFF4601	0.78	-0.4
4,594,592	-		GFF4601	0.78	-0.9
4,594,592	-		GFF4601	0.78	+1.0
4,594,592	-		GFF4601	0.78	+0.6
4,594,592	-		GFF4601	0.78	-2.2
4,594,592	-		GFF4601	0.78	-0.2
4,594,594	+		GFF4601	0.79	-0.3
4,594,594	+		GFF4601	0.79	-0.1
4,594,594	+		GFF4601	0.79	-0.5
4,594,594	+		GFF4601	0.79	-0.1
4,594,602	-		GFF4601	0.79	-2.0
4,594,602	-		GFF4601	0.79	-2.6
4,594,602	-		GFF4601	0.79	-1.9
4,594,602	-		GFF4601	0.79	+0.2
4,594,602	-		GFF4601	0.79	-0.3
4,594,604	+		GFF4601	0.79	+0.2
4,594,612	+		GFF4601	0.80	-0.4
4,594,620	-		GFF4601	0.80	+0.1
4,594,625	-		GFF4601	0.81	+0.9
4,594,655	-		GFF4601	0.82	-0.1
4,594,658	+		GFF4601	0.83	-0.8
4,594,666	-		GFF4601	0.83	+1.0
4,594,682	+		GFF4601	0.84	-0.5
4,594,737	-		GFF4601	0.88	-2.0
4,594,743	+		GFF4601	0.88	-0.3
4,594,788	+				-0.5
4,594,828	+				+0.9
4,594,828	+				-1.9
4,594,828	+				-1.2
4,594,836	-				+0.7
4,594,838	-				+1.5
4,594,838	-				-0.3
4,594,868	+				-0.3
4,594,878	+				-0.8
4,594,878	+				-1.2
4,594,878	+				-0.6
4,594,878	+				-0.1
4,594,887	+				-1.6
4,594,932	+				-1.5
4,594,936	-				-0.4
4,595,088	-				-0.4
4,595,150	+				-2.4
4,595,158	-				-0.9
4,595,166	-				-1.3
4,595,172	+				-1.0
4,595,268	+		GFF4602	0.21	-2.4
4,595,276	-		GFF4602	0.22	+0.8
4,595,285	-		GFF4602	0.23	+0.9
4,595,296	+		GFF4602	0.25	-1.7
4,595,316	+		GFF4602	0.27	-1.2
4,595,316	+		GFF4602	0.27	-1.0
4,595,403	+		GFF4602	0.38	+0.5
4,595,411	-		GFF4602	0.38	-0.1
4,595,413	+		GFF4602	0.39	+1.3
4,595,413	+		GFF4602	0.39	+0.1
4,595,417	+		GFF4602	0.39	-1.0
4,595,432	+		GFF4602	0.41	+0.7
4,595,563	+		GFF4602	0.57	-2.4
4,595,563	+		GFF4602	0.57	-0.0
4,595,629	+		GFF4602	0.65	-1.2
4,595,629	+		GFF4602	0.65	+2.3
4,595,641	+		GFF4602	0.66	-1.3
4,595,641	+		GFF4602	0.66	-1.1
4,595,641	+		GFF4602	0.66	+0.4
4,595,649	-		GFF4602	0.67	-1.3
4,595,649	-		GFF4602	0.67	+0.6
4,595,667	-		GFF4602	0.69	-0.1
4,595,673	+		GFF4602	0.70	+1.2
4,595,681	-		GFF4602	0.71	+0.1
4,595,681	-		GFF4602	0.71	-1.2
4,595,695	-		GFF4602	0.73	-0.1
4,595,695	-		GFF4602	0.73	-0.4
4,595,712	-		GFF4602	0.75	+0.5
4,595,714	-		GFF4602	0.75	+0.8
4,595,714	-		GFF4602	0.75	+1.3
4,595,723	+		GFF4602	0.76	+0.3
4,595,731	-		GFF4602	0.77	-0.0
4,595,829	+		GFF4602	0.89	+0.8
4,595,834	+		GFF4602	0.89	-0.2
4,595,842	-				-0.9
4,595,852	-				+0.7
4,595,868	-				-0.4
4,595,918	+				-0.9
4,595,924	+				-0.3
4,595,948	+				-1.4
4,596,015	-				-0.5
4,596,028	+				+0.9
4,596,107	-		GFF4603	0.12	+0.2
4,596,109	+		GFF4603	0.13	+1.1
4,596,109	+		GFF4603	0.13	+0.3
4,596,126	+		GFF4603	0.14	+0.8
4,596,126	+		GFF4603	0.14	+0.1
4,596,134	-		GFF4603	0.14	+0.4
4,596,134	-		GFF4603	0.14	-0.7
4,596,134	-		GFF4603	0.14	+0.1
4,596,157	-		GFF4603	0.16	-1.3
4,596,163	+		GFF4603	0.16	+0.3
4,596,254	-		GFF4603	0.22	+0.2
4,596,260	+		GFF4603	0.22	-0.4
4,596,270	+		GFF4603	0.23	-0.8
4,596,270	+		GFF4603	0.23	+0.3
4,596,304	+		GFF4603	0.25	+1.1
4,596,313	-		GFF4603	0.25	+0.1
4,596,353	-		GFF4603	0.28	-0.7
4,596,363	+		GFF4603	0.28	+0.3
4,596,363	+		GFF4603	0.28	-0.6
4,596,382	+		GFF4603	0.30	-1.5
4,596,390	-		GFF4603	0.30	+0.5
4,596,390	-		GFF4603	0.30	-0.6
4,596,411	+		GFF4603	0.31	+0.7
4,596,411	+		GFF4603	0.31	+0.2
4,596,411	+		GFF4603	0.31	-0.9
4,596,411	+		GFF4603	0.31	-1.3
4,596,411	-		GFF4603	0.31	-0.0
4,596,419	-		GFF4603	0.32	-0.5
4,596,419	-		GFF4603	0.32	-1.4
4,596,421	-		GFF4603	0.32	+0.4
4,596,432	+		GFF4603	0.33	-1.0
4,596,460	-		GFF4603	0.34	-0.0
4,596,491	-		GFF4603	0.36	-2.1
4,596,503	+		GFF4603	0.37	-1.9
4,596,508	-		GFF4603	0.37	-1.7
4,596,552	-		GFF4603	0.40	-0.8
4,596,552	-		GFF4603	0.40	+0.4
4,596,558	+		GFF4603	0.41	-2.5
4,596,581	+		GFF4603	0.42	-0.1
4,596,581	+		GFF4603	0.42	-0.7
4,596,581	+		GFF4603	0.42	+1.9
4,596,584	-		GFF4603	0.42	-1.7
4,596,589	-		GFF4603	0.43	+0.2
4,596,589	-		GFF4603	0.43	-0.7
4,596,589	-		GFF4603	0.43	-0.7
4,596,604	+		GFF4603	0.43	-1.4
4,596,611	+		GFF4603	0.44	+1.0
4,596,625	-		GFF4603	0.45	+1.3
4,596,644	+		GFF4603	0.46	-1.2
4,596,663	-		GFF4603	0.47	-1.4
4,596,673	+		GFF4603	0.48	+0.6
4,596,681	+		GFF4603	0.48	-1.3
4,596,688	+		GFF4603	0.49	-0.2
4,596,691	+		GFF4603	0.49	+0.1
4,596,696	+		GFF4603	0.49	+0.7
4,596,696	+		GFF4603	0.49	+2.1
4,596,699	-		GFF4603	0.49	-0.5
4,596,765	-		GFF4603	0.54	-1.7
4,596,782	+		GFF4603	0.55	-0.8
4,596,803	+		GFF4603	0.56	-2.6
4,596,803	+		GFF4603	0.56	+0.3
4,596,803	+		GFF4603	0.56	+0.1
4,596,822	+		GFF4603	0.57	+0.0
4,596,827	+		GFF4603	0.57	-1.1
4,596,830	-		GFF4603	0.58	+0.3
4,596,832	-		GFF4603	0.58	-1.0
4,596,852	+		GFF4603	0.59	+0.6
4,596,852	+		GFF4603	0.59	+0.3
4,596,852	-		GFF4603	0.59	+0.2