Strain Fitness in Sphingobium sp. HT1-2 around GFF4601

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,592,370	+		GFF4600	0.16	-2.4
4,592,377	+		GFF4600	0.17	-1.1
4,592,418	-		GFF4600	0.20	-0.9
4,592,418	-		GFF4600	0.20	-2.6
4,592,442	-		GFF4600	0.22	-0.2
4,592,490	+		GFF4600	0.26	-0.3
4,592,501	-		GFF4600	0.27	-1.7
4,592,529	-		GFF4600	0.30	-2.6
4,592,550	+		GFF4600	0.32	-1.3
4,592,554	-		GFF4600	0.32	-0.6
4,592,571	-		GFF4600	0.34	+0.4
4,592,601	-		GFF4600	0.36	+0.5
4,592,602	-		GFF4600	0.36	-1.5
4,592,604	+		GFF4600	0.36	+1.5
4,592,604	+		GFF4600	0.36	-0.4
4,592,604	+		GFF4600	0.36	+0.5
4,592,604	+		GFF4600	0.36	+0.4
4,592,604	+		GFF4600	0.36	-0.5
4,592,604	+		GFF4600	0.36	+0.2
4,592,604	+		GFF4600	0.36	-0.7
4,592,604	+		GFF4600	0.36	-0.7
4,592,604	+		GFF4600	0.36	+0.2
4,592,604	+		GFF4600	0.36	-1.7
4,592,609	+		GFF4600	0.37	+1.1
4,592,609	+		GFF4600	0.37	-0.6
4,592,609	+		GFF4600	0.37	+0.5
4,592,612	-		GFF4600	0.37	-0.4
4,592,612	-		GFF4600	0.37	-0.1
4,592,612	-		GFF4600	0.37	-0.6
4,592,612	-		GFF4600	0.37	+0.4
4,592,612	-		GFF4600	0.37	+1.2
4,592,612	-		GFF4600	0.37	-1.5
4,592,612	-		GFF4600	0.37	-1.4
4,592,612	-		GFF4600	0.37	+1.2
4,592,612	-		GFF4600	0.37	+0.1
4,592,612	-		GFF4600	0.37	-1.0
4,592,612	-		GFF4600	0.37	-1.3
4,592,612	-		GFF4600	0.37	-0.5
4,592,617	-		GFF4600	0.38	-0.2
4,592,624	+		GFF4600	0.38	-0.2
4,592,658	-		GFF4600	0.41	-0.9
4,592,681	+		GFF4600	0.43	-2.2
4,592,689	+		GFF4600	0.44	+1.6
4,592,689	-		GFF4600	0.44	-0.7
4,592,758	+		GFF4600	0.50	+0.4
4,592,766	-		GFF4600	0.50	+0.5
4,592,773	+		GFF4600	0.51	-1.4
4,592,774	-		GFF4600	0.51	-1.0
4,592,774	-		GFF4600	0.51	-0.8
4,592,779	-		GFF4600	0.52	+1.0
4,592,783	+		GFF4600	0.52	-0.2
4,592,791	+		GFF4600	0.53	+0.1
4,592,791	-		GFF4600	0.53	-1.1
4,592,796	+		GFF4600	0.53	-1.0
4,592,806	-		GFF4600	0.54	-1.7
4,592,866	+		GFF4600	0.59	+0.4
4,592,874	-		GFF4600	0.60	-1.8
4,592,942	-		GFF4600	0.66	-2.7
4,592,945	+		GFF4600	0.66	+0.2
4,592,970	+		GFF4600	0.68	+0.4
4,592,992	+		GFF4600	0.70	-0.4
4,592,992	+		GFF4600	0.70	-1.0
4,592,995	-		GFF4600	0.70	-0.4
4,593,000	-		GFF4600	0.71	+0.7
4,593,000	-		GFF4600	0.71	-0.6
4,593,006	-		GFF4600	0.71	+0.6
4,593,012	-		GFF4600	0.72	-1.9
4,593,037	-		GFF4600	0.74	-0.2
4,593,076	+		GFF4600	0.77	-2.6
4,593,084	-		GFF4600	0.78	-0.0
4,593,089	-		GFF4600	0.79	+1.0
4,593,093	+		GFF4600	0.79	-0.2
4,593,093	+		GFF4600	0.79	-1.0
4,593,128	-		GFF4600	0.82	-1.1
4,593,128	-		GFF4600	0.82	+1.2
4,593,128	-		GFF4600	0.82	-0.1
4,593,140	+		GFF4600	0.83	-1.1
4,593,140	+		GFF4600	0.83	-0.2
4,593,145	+		GFF4600	0.83	+0.7
4,593,145	+		GFF4600	0.83	-0.6
4,593,148	-		GFF4600	0.84	-1.1
4,593,148	-		GFF4600	0.84	+0.1
4,593,159	+		GFF4600	0.85	-0.9
4,593,172	-		GFF4600	0.86	-0.9
4,593,177	+		GFF4600	0.86	-0.9
4,593,188	+		GFF4600	0.87	+1.4
4,593,188	+		GFF4600	0.87	-1.0
4,593,218	-		GFF4600	0.90	-1.2
4,593,231	+				-1.2
4,593,234	+				-0.9
4,593,242	-				-0.2
4,593,337	+				+0.6
4,593,345	-				+0.9
4,593,345	-				+1.2
4,593,388	-				+0.2
4,593,437	-				+0.9
4,593,471	-				+0.2
4,593,495	+				+0.1
4,593,495	+				+0.7
4,593,495	+				-0.4
4,593,495	+				-0.2
4,593,505	+				+1.0
4,593,539	+		GFF4601	0.12	-0.2
4,593,540	-		GFF4601	0.12	+0.0
4,593,549	+		GFF4601	0.13	-0.7
4,593,549	+		GFF4601	0.13	-1.9
4,593,560	-		GFF4601	0.13	-1.5
4,593,585	+		GFF4601	0.15	-0.3
4,593,585	+		GFF4601	0.15	-0.9
4,593,600	+		GFF4601	0.16	-0.9
4,593,600	+		GFF4601	0.16	+0.0
4,593,600	+		GFF4601	0.16	-1.0
4,593,600	+		GFF4601	0.16	+0.6
4,593,600	+		GFF4601	0.16	-0.1
4,593,600	+		GFF4601	0.16	+0.2
4,593,600	+		GFF4601	0.16	-0.6
4,593,600	+		GFF4601	0.16	+0.3
4,593,600	+		GFF4601	0.16	-0.9
4,593,608	-		GFF4601	0.16	+0.5
4,593,608	-		GFF4601	0.16	-0.9
4,593,608	-		GFF4601	0.16	+0.3
4,593,608	-		GFF4601	0.16	-1.5
4,593,608	-		GFF4601	0.16	+0.9
4,593,608	-		GFF4601	0.16	-1.0
4,593,608	-		GFF4601	0.16	-0.1
4,593,616	+		GFF4601	0.17	+0.3
4,593,616	+		GFF4601	0.17	+1.1
4,593,618	-		GFF4601	0.17	+0.9
4,593,624	-		GFF4601	0.17	-0.2
4,593,624	-		GFF4601	0.17	+0.7
4,593,626	+		GFF4601	0.17	+0.1
4,593,715	+		GFF4601	0.23	+0.1
4,593,742	-		GFF4601	0.25	-0.3
4,593,847	-		GFF4601	0.31	+0.7
4,593,902	+		GFF4601	0.35	+0.7
4,593,902	+		GFF4601	0.35	+0.6
4,593,910	-		GFF4601	0.35	-2.0
4,593,910	-		GFF4601	0.35	-0.0
4,593,910	-		GFF4601	0.35	+1.2
4,593,910	-		GFF4601	0.35	-0.5
4,593,910	-		GFF4601	0.35	-0.5
4,593,912	+		GFF4601	0.35	+0.2
4,593,929	+		GFF4601	0.37	-0.4
4,593,932	-		GFF4601	0.37	+0.3
4,593,937	-		GFF4601	0.37	-0.7
4,593,937	-		GFF4601	0.37	-1.3
4,593,937	-		GFF4601	0.37	-1.5
4,593,947	-		GFF4601	0.38	+0.2
4,593,947	-		GFF4601	0.38	-0.4
4,594,000	+		GFF4601	0.41	+0.1
4,594,000	+		GFF4601	0.41	+0.0
4,594,008	-		GFF4601	0.42	+0.2
4,594,008	-		GFF4601	0.42	-1.1
4,594,008	-		GFF4601	0.42	-0.4
4,594,008	-		GFF4601	0.42	-0.3
4,594,008	-		GFF4601	0.42	-2.7
4,594,130	-		GFF4601	0.49	-1.2
4,594,140	-		GFF4601	0.50	-0.3
4,594,152	+		GFF4601	0.51	-0.3
4,594,152	+		GFF4601	0.51	-0.2
4,594,166	+		GFF4601	0.52	-0.6
4,594,174	-		GFF4601	0.52	-1.3
4,594,202	+		GFF4601	0.54	-0.1
4,594,218	-		GFF4601	0.55	-1.2
4,594,227	-		GFF4601	0.55	+1.6
4,594,279	-		GFF4601	0.59	-0.0
4,594,284	-		GFF4601	0.59	+1.3
4,594,304	+		GFF4601	0.60	-0.5
4,594,304	+		GFF4601	0.60	+0.0
4,594,308	+		GFF4601	0.61	+0.1
4,594,310	+		GFF4601	0.61	+0.3
4,594,316	-		GFF4601	0.61	-0.5
4,594,336	-		GFF4601	0.62	+1.5
4,594,369	+		GFF4601	0.64	+1.3
4,594,399	+		GFF4601	0.66	-1.8
4,594,424	+		GFF4601	0.68	-0.0
4,594,448	+		GFF4601	0.69	+0.1
4,594,455	+		GFF4601	0.70	-0.4
4,594,465	-		GFF4601	0.70	-1.0
4,594,475	+		GFF4601	0.71	+0.8
4,594,502	+		GFF4601	0.73	-0.5
4,594,513	-		GFF4601	0.73	+0.1
4,594,546	+		GFF4601	0.76	+0.9
4,594,546	+		GFF4601	0.76	+0.9
4,594,554	-		GFF4601	0.76	-0.4
4,594,554	-		GFF4601	0.76	-1.0
4,594,554	-		GFF4601	0.76	+0.7
4,594,571	-		GFF4601	0.77	-0.7
4,594,584	+		GFF4601	0.78	+1.1
4,594,584	+		GFF4601	0.78	-0.4
4,594,584	+		GFF4601	0.78	-0.4
4,594,592	-		GFF4601	0.78	+0.2
4,594,592	-		GFF4601	0.78	-0.4
4,594,592	-		GFF4601	0.78	-0.9
4,594,592	-		GFF4601	0.78	+1.0
4,594,592	-		GFF4601	0.78	+0.6
4,594,592	-		GFF4601	0.78	-2.2
4,594,592	-		GFF4601	0.78	-0.2
4,594,594	+		GFF4601	0.79	-0.3
4,594,594	+		GFF4601	0.79	-0.1
4,594,594	+		GFF4601	0.79	-0.5
4,594,594	+		GFF4601	0.79	-0.1
4,594,602	-		GFF4601	0.79	-2.0
4,594,602	-		GFF4601	0.79	-2.6
4,594,602	-		GFF4601	0.79	-1.9
4,594,602	-		GFF4601	0.79	+0.2
4,594,602	-		GFF4601	0.79	-0.3
4,594,604	+		GFF4601	0.79	+0.2
4,594,612	+		GFF4601	0.80	-0.4
4,594,620	-		GFF4601	0.80	+0.1
4,594,625	-		GFF4601	0.81	+0.9
4,594,655	-		GFF4601	0.82	-0.1
4,594,658	+		GFF4601	0.83	-0.8
4,594,666	-		GFF4601	0.83	+1.0
4,594,682	+		GFF4601	0.84	-0.5
4,594,737	-		GFF4601	0.88	-2.0
4,594,743	+		GFF4601	0.88	-0.3
4,594,788	+				-0.5
4,594,828	+				+0.9
4,594,828	+				-1.9
4,594,828	+				-1.2
4,594,836	-				+0.7
4,594,838	-				+1.5
4,594,838	-				-0.3
4,594,868	+				-0.3
4,594,878	+				-0.8
4,594,878	+				-1.2
4,594,878	+				-0.6
4,594,878	+				-0.1
4,594,887	+				-1.6
4,594,932	+				-1.5
4,594,936	-				-0.4
4,595,088	-				-0.4
4,595,150	+				-2.4
4,595,158	-				-0.9
4,595,166	-				-1.3
4,595,172	+				-1.0
4,595,268	+		GFF4602	0.21	-2.4
4,595,276	-		GFF4602	0.22	+0.8
4,595,285	-		GFF4602	0.23	+0.9
4,595,296	+		GFF4602	0.25	-1.7
4,595,316	+		GFF4602	0.27	-1.2
4,595,316	+		GFF4602	0.27	-1.0
4,595,403	+		GFF4602	0.38	+0.5
4,595,411	-		GFF4602	0.38	-0.1
4,595,413	+		GFF4602	0.39	+1.3
4,595,413	+		GFF4602	0.39	+0.1
4,595,417	+		GFF4602	0.39	-1.0
4,595,432	+		GFF4602	0.41	+0.7
4,595,563	+		GFF4602	0.57	-2.4
4,595,563	+		GFF4602	0.57	-0.0
4,595,629	+		GFF4602	0.65	-1.2
4,595,629	+		GFF4602	0.65	+2.3
4,595,641	+		GFF4602	0.66	-1.3
4,595,641	+		GFF4602	0.66	-1.1
4,595,641	+		GFF4602	0.66	+0.4
4,595,649	-		GFF4602	0.67	-1.3
4,595,649	-		GFF4602	0.67	+0.6
4,595,667	-		GFF4602	0.69	-0.1
4,595,673	+		GFF4602	0.70	+1.2
4,595,681	-		GFF4602	0.71	+0.1
4,595,681	-		GFF4602	0.71	-1.2
4,595,695	-		GFF4602	0.73	-0.1
4,595,695	-		GFF4602	0.73	-0.4
4,595,712	-		GFF4602	0.75	+0.5
4,595,714	-		GFF4602	0.75	+0.8
4,595,714	-		GFF4602	0.75	+1.3
4,595,723	+		GFF4602	0.76	+0.3
4,595,731	-		GFF4602	0.77	-0.0
4,595,829	+		GFF4602	0.89	+0.8
4,595,834	+		GFF4602	0.89	-0.2
4,595,842	-				-0.9
4,595,852	-				+0.7
4,595,868	-				-0.4
4,595,918	+				-0.9
4,595,924	+				-0.3