Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4593 and GFF4594 are separated by 402 nucleotides GFF4594 and GFF4595 are separated by 4 nucleotides GFF4595 and GFF4596 are separated by 21 nucleotides
GFF4593 - hypothetical protein, at 4,586,176 to 4,587,456
GFF4593
GFF4594 - miscellaneous; unknown, at 4,587,859 to 4,587,987
GFF4594
GFF4595 - '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11, at 4,587,992 to 4,588,297
GFF4595
GFF4596 - hypothetical protein, at 4,588,319 to 4,589,482
GFF4596
Position (kb) 4587
4588
4589 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4587.011 kb on - strand, within GFF4593 at 4587.087 kb on - strand, within GFF4593 at 4587.088 kb on - strand, within GFF4593 at 4587.113 kb on - strand, within GFF4593 at 4587.127 kb on + strand, within GFF4593 at 4587.164 kb on + strand, within GFF4593 at 4587.172 kb on - strand, within GFF4593 at 4587.220 kb on + strand, within GFF4593 at 4587.237 kb on + strand, within GFF4593 at 4587.252 kb on + strand, within GFF4593 at 4587.265 kb on - strand, within GFF4593 at 4587.309 kb on + strand, within GFF4593 at 4587.352 kb on + strand at 4587.354 kb on - strand at 4587.359 kb on - strand at 4587.359 kb on - strand at 4587.359 kb on - strand at 4587.381 kb on - strand at 4587.381 kb on - strand at 4587.392 kb on - strand at 4587.449 kb on + strand at 4587.530 kb on + strand at 4587.558 kb on - strand at 4587.562 kb on + strand at 4587.568 kb on - strand at 4587.570 kb on + strand at 4587.605 kb on - strand at 4587.605 kb on - strand at 4587.605 kb on - strand at 4587.605 kb on - strand at 4587.605 kb on - strand at 4587.619 kb on + strand at 4587.628 kb on - strand at 4587.639 kb on + strand at 4587.649 kb on + strand at 4587.657 kb on - strand at 4587.701 kb on + strand at 4587.701 kb on + strand at 4587.701 kb on + strand at 4587.701 kb on + strand at 4587.741 kb on - strand at 4587.791 kb on - strand at 4587.797 kb on + strand at 4587.827 kb on + strand at 4587.858 kb on - strand at 4587.877 kb on - strand, within GFF4594 at 4587.877 kb on - strand, within GFF4594 at 4588.192 kb on - strand, within GFF4595 at 4588.207 kb on - strand, within GFF4595 at 4588.209 kb on + strand, within GFF4595 at 4588.213 kb on - strand, within GFF4595 at 4588.242 kb on + strand, within GFF4595 at 4588.242 kb on + strand, within GFF4595 at 4588.250 kb on - strand, within GFF4595 at 4588.250 kb on - strand, within GFF4595 at 4588.264 kb on - strand, within GFF4595 at 4588.266 kb on - strand, within GFF4595 at 4588.324 kb on + strand at 4588.347 kb on + strand at 4588.409 kb on + strand at 4588.418 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.419 kb on + strand at 4588.427 kb on - strand at 4588.427 kb on - strand at 4588.440 kb on - strand, within GFF4596 at 4588.472 kb on + strand, within GFF4596 at 4588.472 kb on + strand, within GFF4596 at 4588.480 kb on - strand, within GFF4596 at 4588.534 kb on - strand, within GFF4596 at 4588.534 kb on - strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.548 kb on + strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.556 kb on - strand, within GFF4596 at 4588.611 kb on + strand, within GFF4596 at 4588.618 kb on + strand, within GFF4596 at 4588.619 kb on - strand, within GFF4596 at 4588.633 kb on + strand, within GFF4596 at 4588.633 kb on + strand, within GFF4596 at 4588.641 kb on - strand, within GFF4596 at 4588.641 kb on - strand, within GFF4596 at 4588.641 kb on - strand, within GFF4596 at 4588.641 kb on - strand, within GFF4596 at 4588.678 kb on + strand, within GFF4596 at 4588.726 kb on + strand, within GFF4596 at 4588.731 kb on + strand, within GFF4596 at 4588.739 kb on + strand, within GFF4596 at 4588.810 kb on - strand, within GFF4596 at 4588.820 kb on + strand, within GFF4596 at 4588.820 kb on - strand, within GFF4596 at 4588.988 kb on + strand, within GFF4596 at 4589.004 kb on - strand, within GFF4596 at 4589.011 kb on + strand, within GFF4596 at 4589.011 kb on + strand, within GFF4596 at 4589.019 kb on - strand, within GFF4596 at 4589.021 kb on + strand, within GFF4596 at 4589.021 kb on + strand, within GFF4596 at 4589.026 kb on + strand, within GFF4596 at 4589.026 kb on + strand, within GFF4596 at 4589.053 kb on + strand, within GFF4596 at 4589.061 kb on - strand, within GFF4596 at 4589.093 kb on + strand, within GFF4596 at 4589.104 kb on + strand, within GFF4596 at 4589.106 kb on + strand, within GFF4596 at 4589.125 kb on + strand, within GFF4596 at 4589.160 kb on + strand, within GFF4596 at 4589.167 kb on + strand, within GFF4596 at 4589.168 kb on - strand, within GFF4596 at 4589.175 kb on + strand, within GFF4596 at 4589.175 kb on + strand, within GFF4596 at 4589.175 kb on + strand, within GFF4596 at 4589.183 kb on - strand, within GFF4596 at 4589.183 kb on - strand, within GFF4596 at 4589.183 kb on - strand, within GFF4596 at 4589.197 kb on + strand, within GFF4596 at 4589.205 kb on - strand, within GFF4596 at 4589.205 kb on - strand, within GFF4596 at 4589.245 kb on + strand, within GFF4596 at 4589.295 kb on + strand, within GFF4596
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,587,011 - GFF4593 0.65 -1.0 4,587,087 - GFF4593 0.71 -2.2 4,587,088 - GFF4593 0.71 -0.5 4,587,113 - GFF4593 0.73 -0.7 4,587,127 + GFF4593 0.74 -0.2 4,587,164 + GFF4593 0.77 -0.4 4,587,172 - GFF4593 0.78 -0.6 4,587,220 + GFF4593 0.81 -1.7 4,587,237 + GFF4593 0.83 -0.1 4,587,252 + GFF4593 0.84 -0.2 4,587,265 - GFF4593 0.85 -2.1 4,587,309 + GFF4593 0.88 -1.7 4,587,352 + -1.0 4,587,354 - +0.3 4,587,359 - -1.2 4,587,359 - -2.1 4,587,359 - -2.6 4,587,381 - +0.3 4,587,381 - +0.1 4,587,392 - -0.3 4,587,449 + -1.0 4,587,530 + +0.1 4,587,558 - -0.9 4,587,562 + +0.4 4,587,568 - -0.0 4,587,570 + -0.6 4,587,605 - +0.6 4,587,605 - +0.6 4,587,605 - +1.6 4,587,605 - -0.1 4,587,605 - +0.6 4,587,619 + -0.7 4,587,628 - +0.2 4,587,639 + +0.0 4,587,649 + -0.3 4,587,657 - -0.5 4,587,701 + -0.3 4,587,701 + -0.2 4,587,701 + +0.4 4,587,701 + -0.4 4,587,741 - -0.4 4,587,791 - -0.3 4,587,797 + +0.0 4,587,827 + -0.3 4,587,858 - -1.8 4,587,877 - GFF4594 0.14 -1.0 4,587,877 - GFF4594 0.14 +0.7 4,588,192 - GFF4595 0.65 +0.9 4,588,207 - GFF4595 0.70 -0.4 4,588,209 + GFF4595 0.71 -0.0 4,588,213 - GFF4595 0.72 +1.0 4,588,242 + GFF4595 0.82 -1.8 4,588,242 + GFF4595 0.82 -1.1 4,588,250 - GFF4595 0.84 -1.6 4,588,250 - GFF4595 0.84 -0.8 4,588,264 - GFF4595 0.89 -0.6 4,588,266 - GFF4595 0.90 -0.7 4,588,324 + +0.2 4,588,347 + -0.9 4,588,409 + -1.4 4,588,418 + +0.4 4,588,419 + +0.4 4,588,419 + +1.1 4,588,419 + +0.8 4,588,419 + +1.7 4,588,419 + -0.1 4,588,419 + -0.9 4,588,419 + -0.3 4,588,419 + +0.2 4,588,419 + -0.4 4,588,427 - -0.8 4,588,427 - +0.7 4,588,440 - GFF4596 0.10 +0.7 4,588,472 + GFF4596 0.13 -0.9 4,588,472 + GFF4596 0.13 +0.4 4,588,480 - GFF4596 0.14 -1.3 4,588,534 - GFF4596 0.18 +1.1 4,588,534 - GFF4596 0.18 -1.5 4,588,548 + GFF4596 0.20 -2.1 4,588,548 + GFF4596 0.20 +0.6 4,588,548 + GFF4596 0.20 +0.1 4,588,548 + GFF4596 0.20 -1.9 4,588,548 + GFF4596 0.20 +0.0 4,588,548 + GFF4596 0.20 -1.2 4,588,548 + GFF4596 0.20 +0.1 4,588,548 + GFF4596 0.20 +0.4 4,588,548 + GFF4596 0.20 -0.5 4,588,548 + GFF4596 0.20 +0.0 4,588,548 + GFF4596 0.20 -0.5 4,588,548 + GFF4596 0.20 +1.1 4,588,548 + GFF4596 0.20 +0.8 4,588,548 + GFF4596 0.20 +2.9 4,588,548 + GFF4596 0.20 -0.6 4,588,548 + GFF4596 0.20 -0.7 4,588,548 + GFF4596 0.20 -0.9 4,588,548 + GFF4596 0.20 +0.3 4,588,556 - GFF4596 0.20 +0.4 4,588,556 - GFF4596 0.20 -0.2 4,588,556 - GFF4596 0.20 -1.3 4,588,556 - GFF4596 0.20 +1.4 4,588,556 - GFF4596 0.20 -2.1 4,588,556 - GFF4596 0.20 -0.7 4,588,556 - GFF4596 0.20 -1.4 4,588,556 - GFF4596 0.20 +0.4 4,588,556 - GFF4596 0.20 -0.4 4,588,556 - GFF4596 0.20 -0.9 4,588,556 - GFF4596 0.20 -0.4 4,588,556 - GFF4596 0.20 -0.1 4,588,556 - GFF4596 0.20 +0.1 4,588,556 - GFF4596 0.20 -0.2 4,588,556 - GFF4596 0.20 -0.6 4,588,556 - GFF4596 0.20 -1.3 4,588,556 - GFF4596 0.20 -0.6 4,588,611 + GFF4596 0.25 -0.2 4,588,618 + GFF4596 0.26 -1.3 4,588,619 - GFF4596 0.26 -0.0 4,588,633 + GFF4596 0.27 -1.3 4,588,633 + GFF4596 0.27 -0.6 4,588,641 - GFF4596 0.28 -0.2 4,588,641 - GFF4596 0.28 +0.4 4,588,641 - GFF4596 0.28 -0.2 4,588,641 - GFF4596 0.28 +0.1 4,588,678 + GFF4596 0.31 +1.1 4,588,726 + GFF4596 0.35 -0.4 4,588,731 + GFF4596 0.35 +0.3 4,588,739 + GFF4596 0.36 -0.1 4,588,810 - GFF4596 0.42 -0.8 4,588,820 + GFF4596 0.43 +0.4 4,588,820 - GFF4596 0.43 -1.3 4,588,988 + GFF4596 0.57 +0.4 4,589,004 - GFF4596 0.59 -0.0 4,589,011 + GFF4596 0.59 -0.6 4,589,011 + GFF4596 0.59 +0.1 4,589,019 - GFF4596 0.60 -1.2 4,589,021 + GFF4596 0.60 -1.0 4,589,021 + GFF4596 0.60 -0.9 4,589,026 + GFF4596 0.61 +0.1 4,589,026 + GFF4596 0.61 -1.2 4,589,053 + GFF4596 0.63 -0.1 4,589,061 - GFF4596 0.64 +0.2 4,589,093 + GFF4596 0.66 -1.3 4,589,104 + GFF4596 0.67 +2.1 4,589,106 + GFF4596 0.68 -0.8 4,589,125 + GFF4596 0.69 +0.6 4,589,160 + GFF4596 0.72 +1.3 4,589,167 + GFF4596 0.73 +0.6 4,589,168 - GFF4596 0.73 +0.2 4,589,175 + GFF4596 0.74 +1.7 4,589,175 + GFF4596 0.74 -0.2 4,589,175 + GFF4596 0.74 -1.2 4,589,183 - GFF4596 0.74 -0.4 4,589,183 - GFF4596 0.74 -1.8 4,589,183 - GFF4596 0.74 +0.9 4,589,197 + GFF4596 0.75 -1.2 4,589,205 - GFF4596 0.76 +0.7 4,589,205 - GFF4596 0.76 -0.5 4,589,245 + GFF4596 0.80 -0.5 4,589,295 + GFF4596 0.84 -0.0
Or see this region's nucleotide sequence