Strain Fitness in Sphingobium sp. HT1-2 around GFF4228

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,243,476	-		GFF4227	0.11	+0.2
4,243,478	+		GFF4227	0.12	-0.5
4,243,479	-		GFF4227	0.12	-0.4
4,243,495	-		GFF4227	0.13	-0.6
4,243,518	-		GFF4227	0.15	-0.0
4,243,532	+		GFF4227	0.16	-0.6
4,243,540	-		GFF4227	0.17	+0.1
4,243,542	+		GFF4227	0.17	-2.2
4,243,550	-		GFF4227	0.18	-0.9
4,243,550	-		GFF4227	0.18	-0.8
4,243,550	-		GFF4227	0.18	-0.3
4,243,550	-		GFF4227	0.18	-0.8
4,243,576	+		GFF4227	0.20	-0.3
4,243,580	+		GFF4227	0.21	-0.6
4,243,581	+		GFF4227	0.21	+1.4
4,243,589	-		GFF4227	0.21	-1.5
4,243,592	+		GFF4227	0.22	-0.8
4,243,594	-		GFF4227	0.22	-0.3
4,243,598	+		GFF4227	0.22	-0.6
4,243,600	-		GFF4227	0.22	-0.9
4,243,617	+		GFF4227	0.24	+0.2
4,243,647	+		GFF4227	0.27	-1.4
4,243,647	+		GFF4227	0.27	+0.6
4,243,649	-		GFF4227	0.27	-1.1
4,243,661	+		GFF4227	0.28	+0.6
4,243,661	+		GFF4227	0.28	-0.4
4,243,661	+		GFF4227	0.28	-0.6
4,243,661	+		GFF4227	0.28	+0.5
4,243,661	+		GFF4227	0.28	-1.4
4,243,661	+		GFF4227	0.28	+0.8
4,243,661	+		GFF4227	0.28	+1.7
4,243,661	+		GFF4227	0.28	+1.4
4,243,661	+		GFF4227	0.28	-0.2
4,243,661	+		GFF4227	0.28	-1.2
4,243,664	-		GFF4227	0.28	-1.6
4,243,669	-		GFF4227	0.29	-0.6
4,243,669	-		GFF4227	0.29	-0.4
4,243,669	-		GFF4227	0.29	+0.9
4,243,669	-		GFF4227	0.29	+2.1
4,243,669	-		GFF4227	0.29	-0.9
4,243,669	-		GFF4227	0.29	-0.1
4,243,669	-		GFF4227	0.29	-0.4
4,243,669	-		GFF4227	0.29	+0.5
4,243,669	-		GFF4227	0.29	-2.5
4,243,669	-		GFF4227	0.29	-2.4
4,243,669	-		GFF4227	0.29	-2.1
4,243,669	-		GFF4227	0.29	+0.4
4,243,669	-		GFF4227	0.29	+0.4
4,243,669	-		GFF4227	0.29	-2.0
4,243,669	-		GFF4227	0.29	-0.3
4,243,669	-		GFF4227	0.29	-0.6
4,243,669	-		GFF4227	0.29	+0.6
4,243,669	-		GFF4227	0.29	-0.4
4,243,669	-		GFF4227	0.29	+0.2
4,243,669	-		GFF4227	0.29	-0.4
4,243,671	+		GFF4227	0.29	-1.4
4,243,671	+		GFF4227	0.29	-1.2
4,243,676	+		GFF4227	0.29	-0.0
4,243,677	-		GFF4227	0.29	-0.4
4,243,679	-		GFF4227	0.29	+0.9
4,243,679	-		GFF4227	0.29	-1.5
4,243,684	+		GFF4227	0.30	-1.2
4,243,708	+		GFF4227	0.32	-1.8
4,243,708	+		GFF4227	0.32	+0.2
4,243,716	-		GFF4227	0.33	-0.4
4,243,723	+		GFF4227	0.33	-0.3
4,243,740	+		GFF4227	0.35	-0.7
4,243,757	+		GFF4227	0.36	+1.3
4,243,758	+		GFF4227	0.37	+1.2
4,243,760	+		GFF4227	0.37	-1.3
4,243,760	+		GFF4227	0.37	+0.8
4,243,763	+		GFF4227	0.37	+0.3
4,243,766	-		GFF4227	0.37	-0.9
4,243,768	+		GFF4227	0.37	-1.1
4,243,768	+		GFF4227	0.37	-0.8
4,243,768	+		GFF4227	0.37	+0.1
4,243,768	-		GFF4227	0.37	-0.6
4,243,768	-		GFF4227	0.37	-0.4
4,243,771	-		GFF4227	0.38	+0.5
4,243,776	-		GFF4227	0.38	-1.0
4,243,789	+		GFF4227	0.39	+0.1
4,243,820	+		GFF4227	0.42	-1.4
4,243,820	+		GFF4227	0.42	-0.8
4,243,820	+		GFF4227	0.42	+1.1
4,243,828	-		GFF4227	0.43	-1.2
4,243,828	-		GFF4227	0.43	-0.9
4,243,835	+		GFF4227	0.43	-1.1
4,243,835	+		GFF4227	0.43	+0.9
4,243,835	+		GFF4227	0.43	-0.0
4,243,843	-		GFF4227	0.44	+0.3
4,243,843	-		GFF4227	0.44	+0.0
4,243,843	-		GFF4227	0.44	-0.3
4,243,889	+		GFF4227	0.48	-0.1
4,243,891	+		GFF4227	0.48	+0.2
4,243,899	-		GFF4227	0.49	+0.5
4,243,904	-		GFF4227	0.50	-1.0
4,243,914	+		GFF4227	0.50	-2.5
4,243,916	+		GFF4227	0.51	+0.6
4,243,924	-		GFF4227	0.51	+0.6
4,243,924	-		GFF4227	0.51	+0.7
4,243,936	+		GFF4227	0.52	+1.9
4,243,936	+		GFF4227	0.52	-0.6
4,243,936	+		GFF4227	0.52	-0.6
4,243,936	+		GFF4227	0.52	-0.5
4,243,936	+		GFF4227	0.52	+0.7
4,243,936	+		GFF4227	0.52	-0.2
4,243,936	+		GFF4227	0.52	-1.9
4,243,944	-		GFF4227	0.53	-0.1
4,243,944	-		GFF4227	0.53	-0.3
4,243,944	-		GFF4227	0.53	+0.4
4,243,944	-		GFF4227	0.53	-0.7
4,243,944	-		GFF4227	0.53	-0.0
4,243,944	-		GFF4227	0.53	-0.3
4,243,944	-		GFF4227	0.53	+0.0
4,243,944	-		GFF4227	0.53	+0.4
4,243,944	-		GFF4227	0.53	-0.1
4,243,944	-		GFF4227	0.53	-1.5
4,243,944	-		GFF4227	0.53	+0.4
4,243,944	-		GFF4227	0.53	+0.0
4,243,944	-		GFF4227	0.53	+1.4
4,243,944	-		GFF4227	0.53	+1.0
4,243,956	+		GFF4227	0.54	-0.7
4,243,964	-		GFF4227	0.55	-0.3
4,243,978	-		GFF4227	0.56	-2.0
4,243,987	+		GFF4227	0.57	-1.3
4,243,987	+		GFF4227	0.57	-1.0
4,243,987	+		GFF4227	0.57	-1.0
4,243,987	+		GFF4227	0.57	+0.7
4,243,988	-		GFF4227	0.57	-0.1
4,243,995	-		GFF4227	0.58	-0.3
4,243,998	+		GFF4227	0.58	-0.3
4,244,006	-		GFF4227	0.59	-1.7
4,244,008	+		GFF4227	0.59	-0.6
4,244,008	+		GFF4227	0.59	+0.1
4,244,009	+		GFF4227	0.59	+0.0
4,244,016	-		GFF4227	0.60	-1.5
4,244,024	-		GFF4227	0.60	+0.6
4,244,036	+		GFF4227	0.61	-1.5
4,244,054	+		GFF4227	0.63	-0.7
4,244,055	+		GFF4227	0.63	+0.2
4,244,062	-		GFF4227	0.64	+0.4
4,244,070	+		GFF4227	0.64	-0.6
4,244,070	+		GFF4227	0.64	-0.6
4,244,070	+		GFF4227	0.64	-0.4
4,244,070	+		GFF4227	0.64	-1.3
4,244,086	+		GFF4227	0.66	-0.2
4,244,087	+		GFF4227	0.66	+0.2
4,244,108	+		GFF4227	0.68	-0.7
4,244,110	+		GFF4227	0.68	+0.6
4,244,110	+		GFF4227	0.68	+0.0
4,244,110	+		GFF4227	0.68	+0.7
4,244,110	+		GFF4227	0.68	-0.6
4,244,110	+		GFF4227	0.68	-0.2
4,244,117	-		GFF4227	0.69	-1.6
4,244,118	-		GFF4227	0.69	+0.2
4,244,118	-		GFF4227	0.69	+1.3
4,244,118	-		GFF4227	0.69	+1.2
4,244,118	-		GFF4227	0.69	-1.2
4,244,118	-		GFF4227	0.69	+0.4
4,244,118	-		GFF4227	0.69	-0.2
4,244,118	-		GFF4227	0.69	-0.1
4,244,118	-		GFF4227	0.69	-0.8
4,244,118	-		GFF4227	0.69	-0.5
4,244,120	+		GFF4227	0.69	+1.2
4,244,139	+		GFF4227	0.71	-0.6
4,244,147	-		GFF4227	0.71	-1.4
4,244,157	-		GFF4227	0.72	-0.1
4,244,164	+		GFF4227	0.73	+0.3
4,244,174	-		GFF4227	0.74	-0.5
4,244,174	-		GFF4227	0.74	-0.6
4,244,176	+		GFF4227	0.74	-1.4
4,244,209	+		GFF4227	0.77	-0.1
4,244,224	-		GFF4227	0.78	+1.2
4,244,224	-		GFF4227	0.78	-0.8
4,244,247	+		GFF4227	0.80	-0.7
4,244,247	+		GFF4227	0.80	+0.4
4,244,247	+		GFF4227	0.80	-0.4
4,244,247	+		GFF4227	0.80	-0.1
4,244,247	+		GFF4227	0.80	+0.0
4,244,247	+		GFF4227	0.80	-0.4
4,244,247	+		GFF4227	0.80	+0.3
4,244,255	-		GFF4227	0.81	+0.9
4,244,255	-		GFF4227	0.81	-0.3
4,244,255	-		GFF4227	0.81	-0.6
4,244,255	-		GFF4227	0.81	-1.1
4,244,255	-		GFF4227	0.81	-1.1
4,244,255	-		GFF4227	0.81	-1.9
4,244,255	-		GFF4227	0.81	+0.0
4,244,255	-		GFF4227	0.81	+0.2
4,244,270	+		GFF4227	0.82	-0.3
4,244,270	+		GFF4227	0.82	-0.3
4,244,278	-		GFF4227	0.83	+1.0
4,244,285	+		GFF4227	0.84	+0.4
4,244,293	-		GFF4227	0.84	-0.1
4,244,293	-		GFF4227	0.84	-0.5
4,244,293	-		GFF4227	0.84	-0.5
4,244,324	+		GFF4227	0.87	-1.1
4,244,324	+		GFF4227	0.87	-0.1
4,244,326	-		GFF4227	0.87	-1.3
4,244,332	-		GFF4227	0.88	+0.7
4,244,337	-		GFF4227	0.88	-1.8
4,244,337	-		GFF4227	0.88	-1.0
4,244,342	-		GFF4227	0.89	+0.5
4,244,352	-		GFF4227	0.90	+0.2
4,244,358	+				-0.5
4,244,358	+				-0.6
4,244,363	+				-0.6
4,244,364	-				+0.1
4,244,366	-				+0.2
4,244,368	+				-0.1
4,244,371	-				-2.1
4,244,371	-				-0.3
4,244,378	+				+1.9
4,244,378	+				-0.1
4,244,379	+				-0.6
4,244,386	-				-0.3
4,244,386	-				+2.2
4,244,387	+				+0.3
4,244,387	-				-2.8
4,244,388	+				+0.1
4,244,388	+				-0.7
4,244,388	+				+0.2
4,244,391	-				-1.7
4,244,391	-				-1.1
4,244,391	-				+0.4
4,244,396	-				-0.4
4,244,396	-				+0.3
4,244,396	-				+0.8
4,244,396	-				-1.5
4,244,396	-				+0.8
4,244,404	+				-0.7
4,244,404	+				+0.2
4,244,404	+				-0.9
4,244,412	-				-0.3
4,244,412	-				+0.4
4,244,412	-				+0.2
4,244,412	-				-0.7
4,244,412	-				+0.3
4,244,417	+				-0.4
4,244,417	+				-2.1
4,244,422	+				-0.8
4,244,425	-				+0.5
4,244,425	-				+0.1
4,244,430	-				-0.6
4,244,430	-				+0.7
4,244,430	-				+0.7
4,244,437	+				-0.1
4,244,451	+				-2.0
4,244,463	-				+0.2
4,244,463	-				-1.1
4,244,477	-				-2.6
4,244,512	-				+1.4
4,244,527	-				-0.6
4,244,531	+		GFF4228	0.11	-1.5
4,244,562	+		GFF4228	0.16	-1.8
4,244,583	+		GFF4228	0.20	-1.3
4,244,589	+		GFF4228	0.21	+0.9
4,244,593	-		GFF4228	0.22	-2.1
4,244,611	+		GFF4228	0.25	-0.1
4,244,611	-		GFF4228	0.25	-2.3
4,244,619	-		GFF4228	0.26	-1.4
4,244,635	+		GFF4228	0.29	+0.8
4,244,635	+		GFF4228	0.29	-0.3
4,244,635	+		GFF4228	0.29	+0.3
4,244,643	-		GFF4228	0.30	-2.2
4,244,643	-		GFF4228	0.30	-0.1
4,244,643	-		GFF4228	0.30	-0.4
4,244,650	-		GFF4228	0.32	+1.0
4,244,659	+		GFF4228	0.33	-0.3
4,244,667	+		GFF4228	0.35	-0.5
4,244,667	+		GFF4228	0.35	+1.0
4,244,667	-		GFF4228	0.35	-2.2
4,244,676	-		GFF4228	0.36	-1.7
4,244,680	+		GFF4228	0.37	-0.4
4,244,687	+		GFF4228	0.38	-0.3
4,244,697	+		GFF4228	0.40	-0.4
4,244,697	+		GFF4228	0.40	-1.7
4,244,697	+		GFF4228	0.40	-1.2
4,244,697	+		GFF4228	0.40	-0.5
4,244,705	+		GFF4228	0.41	-1.2
4,244,705	-		GFF4228	0.41	-0.1
4,244,712	+		GFF4228	0.43	-0.0
4,244,728	+		GFF4228	0.46	+0.2
4,244,730	-		GFF4228	0.46	-0.7
4,244,730	-		GFF4228	0.46	-2.1
4,244,754	-		GFF4228	0.50	+0.2
4,244,781	-		GFF4228	0.55	-2.5
4,244,784	+		GFF4228	0.55	-2.2
4,244,784	+		GFF4228	0.55	+0.5
4,244,784	+		GFF4228	0.55	-0.9
4,244,784	+		GFF4228	0.55	-0.7
4,244,786	+		GFF4228	0.56	-0.4
4,244,792	-		GFF4228	0.57	+0.5
4,244,792	-		GFF4228	0.57	+0.3
4,244,792	-		GFF4228	0.57	-0.4
4,244,797	+		GFF4228	0.58	+0.2
4,244,802	-		GFF4228	0.59	-0.6
4,244,805	+		GFF4228	0.59	-1.3
4,244,808	-		GFF4228	0.60	-0.6
4,244,808	-		GFF4228	0.60	-0.1
4,244,813	-		GFF4228	0.61	-2.7
4,244,921	-		GFF4228	0.80	+0.2
4,245,156	+				-1.0
4,245,160	-				+1.2
4,245,163	-				-1.5
4,245,174	-				-1.1
4,245,222	+				-0.8
4,245,222	+				-1.2
4,245,256	+				-0.8
4,245,256	+				+0.3
4,245,256	+				+0.4
4,245,264	-				-0.1
4,245,278	-				+0.7
4,245,317	-				+0.5
4,245,317	-				-0.9
4,245,317	-				+0.7
4,245,341	-				-1.6
4,245,341	-				+0.3
4,245,341	-				-0.3
4,245,352	-				+0.4
4,245,364	+				+1.0
4,245,379	-				+0.3
4,245,383	+				-0.9
4,245,387	-				-0.3
4,245,390	-				-1.3
4,245,401	-				-0.3
4,245,412	+				-1.3
4,245,418	-				+0.6
4,245,418	-				-1.5
4,245,420	-				-2.0
4,245,422	+				+0.1
4,245,425	-				-0.3
4,245,430	-				+1.5
4,245,450	+				-1.7
4,245,482	+				+0.8
4,245,482	+				-1.1
4,245,482	+				-1.1
4,245,482	+				-0.0
4,245,490	-				-0.5
4,245,490	-				+1.1
4,245,490	-				+0.5
4,245,519	-				-0.7
4,245,525	+				-1.8
4,245,527	+				+0.5
4,245,527	+				+0.3
4,245,527	+				+0.3
4,245,533	-		GFF4229	0.10	-0.7
4,245,535	-		GFF4229	0.10	-0.3
4,245,548	+		GFF4229	0.11	-2.7
4,245,556	-		GFF4229	0.12	-0.9
4,245,557	+		GFF4229	0.12	-0.5
4,245,560	+		GFF4229	0.12	+1.5
4,245,560	+		GFF4229	0.12	-2.0
4,245,560	+		GFF4229	0.12	-0.4
4,245,568	+		GFF4229	0.12	+0.5
4,245,568	+		GFF4229	0.12	-0.2
4,245,576	-		GFF4229	0.13	-0.1
4,245,579	+		GFF4229	0.13	-0.7
4,245,579	+		GFF4229	0.13	-1.9
4,245,579	+		GFF4229	0.13	-0.2
4,245,579	+		GFF4229	0.13	-0.5
4,245,579	+		GFF4229	0.13	+0.3
4,245,579	+		GFF4229	0.13	-0.5
4,245,579	+		GFF4229	0.13	-2.1
4,245,579	+		GFF4229	0.13	+0.9
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