Strain Fitness in Sphingobium sp. HT1-2 around GFF4212

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,233,057	-		GFF4211	0.54	-2.3
4,233,118	-		GFF4211	0.59	-1.4
4,233,137	-		GFF4211	0.61	-2.0
4,233,137	-		GFF4211	0.61	-1.4
4,233,137	-		GFF4211	0.61	-0.9
4,233,227	-		GFF4211	0.69	-1.7
4,233,266	+		GFF4211	0.72	-0.6
4,233,311	+		GFF4211	0.76	-1.7
4,233,311	+		GFF4211	0.76	-0.4
4,233,319	-		GFF4211	0.77	+1.0
4,233,392	+		GFF4211	0.83	-0.3
4,233,415	-		GFF4211	0.85	-1.7
4,233,627	-				-0.8
4,233,663	-				-1.1
4,233,696	+				-2.3
4,233,705	+				-1.4
4,233,705	+				-2.3
4,233,713	-				+0.4
4,233,713	-				+0.5
4,233,713	-				+1.3
4,233,716	+				-1.4
4,233,724	-				-0.7
4,233,768	+		GFF4212	0.22	+0.1
4,233,768	+		GFF4212	0.22	-0.2
4,233,768	+		GFF4212	0.22	+0.3
4,233,776	-		GFF4212	0.28	+0.1
4,233,801	-		GFF4212	0.49	+0.8
4,233,816	+		GFF4212	0.62	-0.7
4,233,816	+		GFF4212	0.62	-0.4
4,233,816	+		GFF4212	0.62	+0.0
4,233,821	+		GFF4212	0.66	+0.7
4,233,824	-		GFF4212	0.68	-1.4
4,233,824	-		GFF4212	0.68	-0.2
4,233,826	+		GFF4212	0.70	+0.7
4,233,826	+		GFF4212	0.70	-1.9
4,233,829	-		GFF4212	0.72	+0.3
4,233,835	+		GFF4212	0.78	+0.1
4,233,842	+		GFF4212	0.83	-1.6
4,233,845	-		GFF4212	0.86	-0.1
4,233,850	-				-1.9
4,233,850	-				-1.6
4,233,850	-				+0.1
4,233,855	+				-0.4
4,233,859	-				+0.4
4,233,860	+				-1.3
4,233,860	+				-0.3
4,233,860	+				+0.8
4,233,860	+				-1.4
4,233,860	+				-2.2
4,233,860	+				-2.3
4,233,860	+				-0.0
4,233,860	+				-1.5
4,233,860	+				+0.8
4,233,863	-				+0.3
4,233,868	-				-1.7
4,233,868	-				-0.9
4,233,868	-				-2.1
4,233,868	-				+0.6
4,233,868	-				-0.1
4,233,881	+				-1.3
4,233,881	+				+0.7
4,233,881	+				-0.5
4,233,881	+				-0.6
4,233,881	+				-1.5
4,233,881	+				+0.2
4,233,881	+				+0.4
4,233,888	+				-0.7
4,233,889	-				-2.1
4,233,889	-				-2.8
4,233,889	-				-0.9
4,233,889	-				-0.8
4,233,889	-				-1.1
4,233,889	-				-0.8
4,233,889	-				-0.9
4,233,889	-				+0.3
4,233,889	-				-2.3
4,233,889	-				-0.2
4,233,889	-				-0.4
4,233,889	-				-0.4
4,233,904	-				-1.3
4,233,909	-				+0.7
4,233,909	-				+0.2
4,233,911	-				-0.1
4,233,911	-				-0.4
4,233,921	+				-0.4
4,233,929	-				+0.2
4,233,947	+				-1.3
4,233,961	-				+0.6
4,233,990	+				+0.3
4,233,995	+				-1.3
4,233,998	-				-1.0
4,234,003	-				-2.1
4,234,003	-				-1.0
4,234,003	-				-0.2
4,234,003	-				-1.3
4,234,024	+				+0.7
4,234,027	-				+0.7
4,234,075	+				-1.1
4,234,075	+				-0.6
4,234,083	-				-0.6
4,234,083	-				-0.4
4,234,093	+				-0.7
4,234,120	-				-1.9
4,234,129	-		GFF4213	0.12	+0.3
4,234,130	-		GFF4213	0.12	-0.7
4,234,131	+		GFF4213	0.12	-1.1
4,234,131	+		GFF4213	0.12	-0.5
4,234,131	+		GFF4213	0.12	-0.9
4,234,131	+		GFF4213	0.12	-1.1
4,234,131	+		GFF4213	0.12	+0.4
4,234,131	+		GFF4213	0.12	-0.3
4,234,131	+		GFF4213	0.12	-0.8
4,234,131	+		GFF4213	0.12	-1.9
4,234,131	+		GFF4213	0.12	-0.2
4,234,139	-		GFF4213	0.15	-0.1
4,234,139	-		GFF4213	0.15	+0.5
4,234,139	-		GFF4213	0.15	+0.1
4,234,139	-		GFF4213	0.15	+0.3
4,234,139	-		GFF4213	0.15	-1.5
4,234,180	-		GFF4213	0.25	+0.3
4,234,189	+		GFF4213	0.27	+0.5
4,234,189	+		GFF4213	0.27	-0.3
4,234,189	+		GFF4213	0.27	-1.5
4,234,189	+		GFF4213	0.27	+0.2
4,234,189	+		GFF4213	0.27	+0.6
4,234,189	+		GFF4213	0.27	-0.8
4,234,197	-		GFF4213	0.29	+0.5
4,234,197	-		GFF4213	0.29	-1.8
4,234,197	-		GFF4213	0.29	+0.1
4,234,197	-		GFF4213	0.29	-0.5
4,234,197	-		GFF4213	0.29	+1.0
4,234,197	-		GFF4213	0.29	-1.0
4,234,197	-		GFF4213	0.29	-1.3
4,234,202	-		GFF4213	0.31	-0.5
4,234,207	+		GFF4213	0.32	-0.9
4,234,214	+		GFF4213	0.34	-0.5
4,234,214	+		GFF4213	0.34	-0.3
4,234,214	+		GFF4213	0.34	-2.0
4,234,214	+		GFF4213	0.34	+0.6
4,234,214	+		GFF4213	0.34	+0.7
4,234,214	+		GFF4213	0.34	+0.5
4,234,214	+		GFF4213	0.34	-1.5
4,234,214	+		GFF4213	0.34	-1.6
4,234,222	-		GFF4213	0.36	-1.7
4,234,222	-		GFF4213	0.36	-1.6
4,234,222	-		GFF4213	0.36	-1.0
4,234,222	-		GFF4213	0.36	-0.5
4,234,222	-		GFF4213	0.36	+0.0
4,234,222	-		GFF4213	0.36	-0.1
4,234,222	-		GFF4213	0.36	-1.2
4,234,222	-		GFF4213	0.36	+0.8
4,234,244	+		GFF4213	0.41	-0.0
4,234,252	-		GFF4213	0.43	+0.8
4,234,252	-		GFF4213	0.43	-1.6
4,234,265	+		GFF4213	0.47	+0.2
4,234,275	+		GFF4213	0.49	-0.4
4,234,275	+		GFF4213	0.49	+0.2
4,234,283	-		GFF4213	0.51	-0.7
4,234,283	-		GFF4213	0.51	-1.4
4,234,283	-		GFF4213	0.51	-0.4
4,234,283	-		GFF4213	0.51	-0.3
4,234,283	-		GFF4213	0.51	-0.4
4,234,283	-		GFF4213	0.51	-1.4
4,234,283	-		GFF4213	0.51	+0.3
4,234,284	+		GFF4213	0.51	-0.2
4,234,284	+		GFF4213	0.51	+0.5
4,234,284	+		GFF4213	0.51	-1.1
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	-0.7
4,234,299	+		GFF4213	0.55	-0.2
4,234,299	+		GFF4213	0.55	-0.0
4,234,299	+		GFF4213	0.55	-1.4
4,234,299	+		GFF4213	0.55	-0.1
4,234,299	+		GFF4213	0.55	+0.5
4,234,299	+		GFF4213	0.55	-0.7
4,234,299	+		GFF4213	0.55	+0.5
4,234,299	+		GFF4213	0.55	-0.9
4,234,299	+		GFF4213	0.55	-1.4
4,234,299	+		GFF4213	0.55	+0.8
4,234,299	+		GFF4213	0.55	-0.9
4,234,299	+		GFF4213	0.55	-0.3
4,234,299	+		GFF4213	0.55	+0.2
4,234,299	+		GFF4213	0.55	-0.3
4,234,299	+		GFF4213	0.55	-0.1
4,234,299	+		GFF4213	0.55	-0.6
4,234,299	+		GFF4213	0.55	-2.1
4,234,299	+		GFF4213	0.55	-0.6
4,234,307	-		GFF4213	0.57	+0.3
4,234,307	-		GFF4213	0.57	-1.3
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-0.6
4,234,307	-		GFF4213	0.57	-0.9
4,234,307	-		GFF4213	0.57	+0.2
4,234,307	-		GFF4213	0.57	-0.2
4,234,307	-		GFF4213	0.57	-0.4
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	-0.5
4,234,307	-		GFF4213	0.57	-0.7
4,234,307	-		GFF4213	0.57	+1.4
4,234,307	-		GFF4213	0.57	-1.7
4,234,307	-		GFF4213	0.57	+0.2
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	+1.3
4,234,307	-		GFF4213	0.57	-0.6
4,234,307	-		GFF4213	0.57	-0.7
4,234,307	-		GFF4213	0.57	+0.3
4,234,307	-		GFF4213	0.57	+0.2
4,234,307	-		GFF4213	0.57	-1.8
4,234,307	-		GFF4213	0.57	-2.1
4,234,307	-		GFF4213	0.57	-0.1
4,234,344	+		GFF4213	0.67	-0.3
4,234,356	+		GFF4213	0.70	-0.2
4,234,356	+		GFF4213	0.70	-2.5
4,234,364	-		GFF4213	0.72	-1.7
4,234,364	-		GFF4213	0.72	-0.4
4,234,376	+		GFF4213	0.75	-0.1
4,234,376	-		GFF4213	0.75	-0.2
4,234,379	+		GFF4213	0.76	-2.1
4,234,379	-		GFF4213	0.76	+0.3
4,234,386	-		GFF4213	0.77	+1.1
4,234,386	-		GFF4213	0.77	+0.9
4,234,387	-		GFF4213	0.78	-0.5
4,234,389	+		GFF4213	0.78	-0.4
4,234,404	+		GFF4213	0.82	+0.5
4,234,409	+		GFF4213	0.83	+0.1
4,234,409	+		GFF4213	0.83	+0.3
4,234,409	+		GFF4213	0.83	-0.5
4,234,409	+		GFF4213	0.83	+0.8
4,234,417	-		GFF4213	0.85	-1.3
4,234,417	-		GFF4213	0.85	+0.2
4,234,417	-		GFF4213	0.85	-0.3
4,234,417	-		GFF4213	0.85	-0.4
4,234,417	-		GFF4213	0.85	-0.6
4,234,417	-		GFF4213	0.85	+0.1
4,234,451	+				+0.0
4,234,451	+				+0.4
4,234,451	+				+0.1
4,234,451	+				+0.8
4,234,451	+				+0.2
4,234,451	+				-1.2
4,234,451	+				+0.9
4,234,451	+				+1.1
4,234,451	+				+0.2
4,234,451	+				+0.3
4,234,451	+				+0.8
4,234,451	+				+1.0
4,234,459	-				-1.3
4,234,459	-				-1.9
4,234,459	-				+0.0
4,234,459	-				-0.3
4,234,465	-				-0.9
4,234,478	+				+0.7
4,234,486	-				-0.7
4,234,492	-				+0.4
4,234,509	-				-1.0
4,234,521	-				-0.2
4,234,521	-				-0.9
4,234,521	-				+0.1
4,234,524	+				-1.0
4,234,539	-				+1.1
4,234,539	-				-1.3
4,234,544	+				-1.0
4,234,578	-		GFF4214	0.18	+0.1
4,234,590	+		GFF4214	0.27	+0.5
4,234,593	-		GFF4214	0.29	-2.1
4,234,609	-		GFF4214	0.39	+0.4
4,234,618	-		GFF4214	0.46	-1.3
4,234,642	+		GFF4214	0.62	+0.3
4,234,643	+		GFF4214	0.63	-1.5
4,234,655	+		GFF4214	0.71	-1.0
4,234,675	-		GFF4214	0.84	+1.2
4,234,675	-		GFF4214	0.84	-1.7
4,234,680	-		GFF4214	0.88	+0.8
4,234,685	-				+1.2
4,234,702	+				+0.4
4,234,711	+				-1.6
4,234,716	+				+1.5
4,234,716	+				+1.2
4,234,716	+				-0.8
4,234,724	-				-0.7
4,234,724	-				-2.8
4,234,724	-				-0.0
4,234,756	+		GFF4215	0.24	+1.6
4,234,764	-		GFF4215	0.32	-2.1
4,234,774	+		GFF4215	0.41	+0.4
4,234,800	+		GFF4215	0.64	+0.0
4,234,800	+		GFF4215	0.64	-2.0
4,234,800	+		GFF4215	0.64	-2.3
4,234,800	+		GFF4215	0.64	-1.3
4,234,807	-		GFF4215	0.70	-1.6
4,234,807	-		GFF4215	0.70	-0.3
4,234,808	-		GFF4215	0.71	-0.0
4,234,808	-		GFF4215	0.71	-0.8
4,234,808	-		GFF4215	0.71	+0.6
4,234,830	+				-0.1
4,234,832	+				-0.1
4,234,832	-				+1.3
4,234,832	-				-1.3
4,234,834	+				+1.2
4,234,839	+				-1.6
4,234,841	-				+1.3
4,234,844	+				-0.4
4,234,855	+				-0.4
4,234,861	+				-0.7
4,234,861	+				-1.8