Strain Fitness in Sphingobium sp. HT1-2 around GFF4156

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,180,817	-		GFF4154	0.82	-1.8
4,180,817	-		GFF4154	0.82	-0.3
4,180,817	-		GFF4154	0.82	-0.2
4,180,817	-		GFF4154	0.82	-0.1
4,180,817	-		GFF4154	0.82	-1.6
4,180,844	+		GFF4154	0.87	-1.9
4,180,844	+		GFF4154	0.87	+0.7
4,180,846	+		GFF4154	0.87	+1.7
4,180,852	-		GFF4154	0.88	-0.5
4,180,852	-		GFF4154	0.88	-0.5
4,180,868	+				+1.2
4,180,873	+				-1.9
4,180,873	+				+0.2
4,180,876	-				-1.0
4,180,876	-				+1.0
4,180,876	-				+0.2
4,180,876	-				-1.2
4,180,881	-				-0.3
4,180,881	-				+0.0
4,180,949	+				-1.2
4,180,957	-				-1.3
4,180,960	+				-0.7
4,180,960	+				-2.1
4,180,968	-				-2.5
4,180,968	-				-2.7
4,180,968	-				-0.8
4,180,978	-				-0.7
4,180,984	+				+0.4
4,180,984	+				-0.7
4,180,984	+				-0.2
4,180,984	+				+0.7
4,180,984	+				-1.2
4,180,984	+				-0.8
4,180,989	-				-0.1
4,180,991	-				-0.4
4,180,992	-				+1.0
4,180,994	+				+0.2
4,181,000	+				-1.2
4,181,008	+				-0.5
4,181,008	+				-1.4
4,181,013	+				-0.9
4,181,015	+				-0.2
4,181,015	+				-0.4
4,181,016	-				+1.0
4,181,021	-				-2.6
4,181,021	-				-1.2
4,181,021	-				-1.3
4,181,021	-				-1.5
4,181,023	-				-1.7
4,181,023	-				+0.7
4,181,039	-				+1.0
4,181,045	+				-0.6
4,181,056	+				-0.2
4,181,056	+				-0.8
4,181,056	+				-0.6
4,181,056	+				-2.1
4,181,056	+				-0.8
4,181,056	+				-0.0
4,181,056	+				+1.2
4,181,056	+				-1.3
4,181,064	-				+0.4
4,181,064	-				-1.7
4,181,064	-				+0.5
4,181,064	-				-1.9
4,181,064	-				-0.4
4,181,064	-				-1.9
4,181,085	-		GFF4155	0.11	-2.2
4,181,095	+		GFF4155	0.12	+0.1
4,181,100	-		GFF4155	0.12	-2.2
4,181,113	-		GFF4155	0.14	-1.3
4,181,154	-		GFF4155	0.19	-0.0
4,181,168	+		GFF4155	0.21	+0.7
4,181,187	+		GFF4155	0.23	+2.6
4,181,195	-		GFF4155	0.24	-1.4
4,181,195	-		GFF4155	0.24	-1.6
4,181,195	-		GFF4155	0.24	-1.9
4,181,195	-		GFF4155	0.24	-2.8
4,181,202	-		GFF4155	0.25	-2.0
4,181,249	+		GFF4155	0.31	-0.1
4,181,252	-		GFF4155	0.31	+0.3
4,181,255	+		GFF4155	0.31	+1.6
4,181,255	+		GFF4155	0.31	+0.0
4,181,258	-		GFF4155	0.32	-0.1
4,181,261	+		GFF4155	0.32	-0.2
4,181,261	+		GFF4155	0.32	+0.4
4,181,263	-		GFF4155	0.32	-1.5
4,181,273	+		GFF4155	0.33	-2.5
4,181,273	+		GFF4155	0.33	-0.3
4,181,275	+		GFF4155	0.34	-0.2
4,181,275	+		GFF4155	0.34	-0.3
4,181,281	+		GFF4155	0.34	+0.0
4,181,292	+		GFF4155	0.36	+0.0
4,181,310	+		GFF4155	0.38	-1.7
4,181,315	+		GFF4155	0.39	-0.8
4,181,318	-		GFF4155	0.39	+0.4
4,181,318	-		GFF4155	0.39	-1.0
4,181,318	-		GFF4155	0.39	+0.2
4,181,327	-		GFF4155	0.40	+0.4
4,181,333	-		GFF4155	0.41	-0.8
4,181,348	-		GFF4155	0.43	+1.3
4,181,349	+		GFF4155	0.43	-0.1
4,181,351	+		GFF4155	0.43	+0.2
4,181,352	-		GFF4155	0.43	+0.4
4,181,352	-		GFF4155	0.43	+2.2
4,181,352	-		GFF4155	0.43	-2.8
4,181,395	-		GFF4155	0.48	-0.6
4,181,400	-		GFF4155	0.49	-0.3
4,181,403	-		GFF4155	0.49	-0.6
4,181,512	-		GFF4155	0.63	-1.8
4,181,528	+		GFF4155	0.64	+0.8
4,181,528	+		GFF4155	0.64	-0.2
4,181,528	+		GFF4155	0.64	+0.3
4,181,528	+		GFF4155	0.64	-1.2
4,181,528	+		GFF4155	0.64	+0.9
4,181,528	+		GFF4155	0.64	-1.2
4,181,528	+		GFF4155	0.64	-0.1
4,181,528	+		GFF4155	0.64	+0.9
4,181,528	+		GFF4155	0.64	-0.2
4,181,528	+		GFF4155	0.64	+0.5
4,181,536	-		GFF4155	0.65	+1.0
4,181,536	-		GFF4155	0.65	-0.3
4,181,536	-		GFF4155	0.65	-0.5
4,181,536	-		GFF4155	0.65	+0.8
4,181,536	-		GFF4155	0.65	-0.2
4,181,565	+		GFF4155	0.69	-0.9
4,181,570	+		GFF4155	0.70	+0.9
4,181,570	+		GFF4155	0.70	+0.5
4,181,570	+		GFF4155	0.70	-0.3
4,181,570	+		GFF4155	0.70	-0.8
4,181,578	-		GFF4155	0.71	+0.8
4,181,578	-		GFF4155	0.71	+1.1
4,181,578	-		GFF4155	0.71	-1.4
4,181,578	-		GFF4155	0.71	-1.6
4,181,578	-		GFF4155	0.71	+0.2
4,181,584	+		GFF4155	0.71	-0.8
4,181,584	+		GFF4155	0.71	-0.3
4,181,584	+		GFF4155	0.71	+0.3
4,181,584	+		GFF4155	0.71	-0.3
4,181,584	+		GFF4155	0.71	+1.2
4,181,584	+		GFF4155	0.71	+0.2
4,181,584	+		GFF4155	0.71	+0.0
4,181,592	-		GFF4155	0.72	-0.6
4,181,592	-		GFF4155	0.72	-0.7
4,181,592	-		GFF4155	0.72	+0.1
4,181,592	-		GFF4155	0.72	+0.0
4,181,595	+		GFF4155	0.73	-0.5
4,181,595	+		GFF4155	0.73	+0.5
4,181,599	+		GFF4155	0.73	-0.1
4,181,603	-		GFF4155	0.74	-1.0
4,181,603	-		GFF4155	0.74	-0.5
4,181,611	-		GFF4155	0.75	-1.0
4,181,611	-		GFF4155	0.75	+1.1
4,181,624	-		GFF4155	0.76	+0.3
4,181,624	-		GFF4155	0.76	-1.6
4,181,626	+		GFF4155	0.76	-2.2
4,181,626	+		GFF4155	0.76	-0.1
4,181,634	-		GFF4155	0.77	-1.3
4,181,634	-		GFF4155	0.77	-1.2
4,181,634	-		GFF4155	0.77	+0.1
4,181,634	-		GFF4155	0.77	-1.6
4,181,646	+		GFF4155	0.79	-2.3
4,181,654	-		GFF4155	0.80	-0.9
4,181,671	+		GFF4155	0.82	-0.8
4,181,671	+		GFF4155	0.82	-0.3
4,181,672	-		GFF4155	0.82	-1.6
4,181,676	-		GFF4155	0.82	-1.3
4,181,701	+		GFF4155	0.86	-0.7
4,181,701	+		GFF4155	0.86	+0.1
4,181,707	+		GFF4155	0.86	-0.6
4,181,707	+		GFF4155	0.86	+0.9
4,181,707	+		GFF4155	0.86	-1.3
4,181,707	+		GFF4155	0.86	-0.1
4,181,707	+		GFF4155	0.86	-2.8
4,181,707	+		GFF4155	0.86	+0.7
4,181,709	-		GFF4155	0.86	+0.2
4,181,715	-		GFF4155	0.87	-0.0
4,181,715	-		GFF4155	0.87	-0.2
4,181,715	-		GFF4155	0.87	-1.5
4,181,715	-		GFF4155	0.87	-0.6
4,181,740	+				-1.8
4,181,740	+				+0.3
4,181,745	+				-0.8
4,181,745	+				-0.2
4,181,745	+				+0.3
4,181,745	+				-2.2
4,181,745	+				-1.0
4,181,745	+				-0.5
4,181,745	+				+0.4
4,181,745	+				-0.8
4,181,745	+				+0.5
4,181,748	-				-0.8
4,181,748	-				+2.0
4,181,753	-				-0.6
4,181,753	-				+1.5
4,181,753	-				-2.1
4,181,753	-				-0.6
4,181,764	+				-1.8
4,181,769	+				+0.4
4,181,772	-				+0.3
4,181,803	+				-0.5
4,181,811	-				-0.2
4,181,813	+				+1.4
4,181,818	+				-1.5
4,181,821	-				-0.0
4,181,830	+				-0.1
4,181,854	+		GFF4156	0.15	-0.6
4,181,862	+		GFF4156	0.18	+1.3
4,181,862	+		GFF4156	0.18	-0.7
4,181,862	+		GFF4156	0.18	-1.0
4,181,862	-		GFF4156	0.18	-0.8
4,181,891	-		GFF4156	0.29	-1.3
4,181,901	+		GFF4156	0.33	+0.0
4,181,903	+		GFF4156	0.33	+0.4
4,181,913	+		GFF4156	0.37	-0.8
4,181,923	+		GFF4156	0.41	+0.3
4,181,937	+		GFF4156	0.46	+0.1
4,181,937	+		GFF4156	0.46	-0.6
4,181,937	+		GFF4156	0.46	-0.9
4,181,937	+		GFF4156	0.46	+0.0
4,181,938	-		GFF4156	0.47	+0.5
4,181,938	-		GFF4156	0.47	-1.0
4,181,938	-		GFF4156	0.47	+0.1
4,181,938	-		GFF4156	0.47	-0.1
4,181,943	-		GFF4156	0.49	-0.2
4,181,945	-		GFF4156	0.49	-0.5
4,181,945	-		GFF4156	0.49	-0.4
4,181,945	-		GFF4156	0.49	-1.3
4,181,947	+		GFF4156	0.50	+0.2
4,182,000	-		GFF4156	0.70	-1.7
4,182,001	+		GFF4156	0.71	-1.9
4,182,001	+		GFF4156	0.71	-1.0
4,182,028	-		GFF4156	0.81	-1.6
4,182,079	+				-2.0
4,182,079	+				+0.4
4,182,079	+				-1.8
4,182,079	+				-1.4
4,182,079	+				+0.2
4,182,079	+				-0.2
4,182,079	+				-0.8
4,182,079	+				-0.5
4,182,079	+				+1.3
4,182,079	+				-2.1
4,182,079	+				-1.5
4,182,087	-				-0.3
4,182,087	-				-0.1
4,182,087	-				-0.2
4,182,087	-				-0.2
4,182,087	-				+0.4
4,182,087	-				-0.2
4,182,087	-				+0.3
4,182,087	-				+0.9
4,182,087	-				+1.1
4,182,087	-				-1.4
4,182,087	-				-0.6
4,182,087	-				+0.0
4,182,087	-				+1.0
4,182,092	-				-1.8
4,182,096	+				-0.1
4,182,096	+				-0.8
4,182,096	+				+1.7
4,182,096	+				-0.6
4,182,096	+				-2.3
4,182,101	+				+0.2
4,182,101	+				-1.6
4,182,101	+				-3.1
4,182,101	+				+0.5
4,182,101	+				-1.3
4,182,104	-				+0.9
4,182,104	-				-2.0
4,182,104	-				+1.1
4,182,104	-				-0.8
4,182,104	-				+0.5
4,182,104	-				-1.8
4,182,104	-				-1.5
4,182,104	-				-1.8
4,182,104	-				-1.2
4,182,104	-				-0.9
4,182,104	-				+0.3
4,182,104	-				-1.1
4,182,109	-				-0.2
4,182,109	-				-0.3
4,182,109	-				-2.2
4,182,143	+				+0.1
4,182,143	+				-0.4
4,182,162	+		GFF4157	0.11	-0.1
4,182,162	+		GFF4157	0.11	-0.1
4,182,162	+		GFF4157	0.11	-0.1
4,182,162	+		GFF4157	0.11	-0.3
4,182,162	+		GFF4157	0.11	-0.8
4,182,162	+		GFF4157	0.11	+0.2
4,182,162	+		GFF4157	0.11	-1.2
4,182,162	+		GFF4157	0.11	-0.6
4,182,162	+		GFF4157	0.11	-1.9
4,182,170	-		GFF4157	0.12	-0.5
4,182,170	-		GFF4157	0.12	-0.3
4,182,170	-		GFF4157	0.12	+0.2
4,182,170	-		GFF4157	0.12	-2.6
4,182,170	-		GFF4157	0.12	+0.5
4,182,172	-		GFF4157	0.12	-0.2
4,182,184	+		GFF4157	0.14	+0.3
4,182,185	+		GFF4157	0.14	-2.1
4,182,186	+		GFF4157	0.14	-0.6
4,182,192	-		GFF4157	0.15	-0.2
4,182,204	-		GFF4157	0.17	+0.1
4,182,241	+		GFF4157	0.22	+0.9
4,182,246	+		GFF4157	0.22	+0.3
4,182,254	-		GFF4157	0.24	+0.2
4,182,254	-		GFF4157	0.24	+0.9
4,182,281	-		GFF4157	0.27	-1.6
4,182,293	+		GFF4157	0.29	-0.2
4,182,301	-		GFF4157	0.30	+0.1
4,182,323	+		GFF4157	0.33	-0.2
4,182,328	+		GFF4157	0.34	-1.8
4,182,336	-		GFF4157	0.35	-1.2
4,182,350	+		GFF4157	0.37	+0.2
4,182,350	+		GFF4157	0.37	-1.2
4,182,357	+		GFF4157	0.38	-1.3
4,182,357	+		GFF4157	0.38	-1.5
4,182,357	+		GFF4157	0.38	-0.3
4,182,358	-		GFF4157	0.38	-0.8
4,182,358	-		GFF4157	0.38	-0.8
4,182,358	-		GFF4157	0.38	-1.6
4,182,364	+		GFF4157	0.39	-0.6
4,182,365	-		GFF4157	0.39	-0.3
4,182,365	-		GFF4157	0.39	-1.3
4,182,394	+		GFF4157	0.43	-0.8
4,182,402	-		GFF4157	0.44	+0.0
4,182,402	-		GFF4157	0.44	-0.6
4,182,409	-		GFF4157	0.45	-0.8
4,182,409	-		GFF4157	0.45	-0.2
4,182,409	-		GFF4157	0.45	-0.4
4,182,414	-		GFF4157	0.45	-0.6
4,182,415	-		GFF4157	0.45	-2.5
4,182,415	-		GFF4157	0.45	-1.2
4,182,415	-		GFF4157	0.45	-0.7
4,182,417	+		GFF4157	0.46	-1.8
4,182,417	+		GFF4157	0.46	-1.0
4,182,417	+		GFF4157	0.46	-0.4
4,182,422	+		GFF4157	0.46	+0.2
4,182,425	-		GFF4157	0.47	+0.6
4,182,430	-		GFF4157	0.47	-1.3
4,182,430	-		GFF4157	0.47	+0.2
4,182,496	+		GFF4157	0.56	-1.8
4,182,500	+		GFF4157	0.57	-1.1
4,182,508	-		GFF4157	0.58	-1.6
4,182,513	+		GFF4157	0.59	-0.7
4,182,521	-		GFF4157	0.60	+0.4
4,182,579	-		GFF4157	0.68	-1.0
4,182,605	+		GFF4157	0.71	-0.8
4,182,606	-		GFF4157	0.71	-1.5
4,182,612	+		GFF4157	0.72	+1.0
4,182,614	+		GFF4157	0.73	-1.1
4,182,614	+		GFF4157	0.73	-1.2
4,182,614	+		GFF4157	0.73	-0.6
4,182,617	+		GFF4157	0.73	-0.6
4,182,617	+		GFF4157	0.73	+0.5
4,182,617	+		GFF4157	0.73	+0.0
4,182,619	+		GFF4157	0.73	-0.2
4,182,619	+		GFF4157	0.73	-0.4
4,182,619	+		GFF4157	0.73	+0.7
4,182,619	+		GFF4157	0.73	-1.2
4,182,619	+		GFF4157	0.73	+0.3
4,182,619	+		GFF4157	0.73	+0.5
4,182,619	+		GFF4157	0.73	-0.2
4,182,619	+		GFF4157	0.73	-0.1
4,182,619	+		GFF4157	0.73	-1.3
4,182,622	-		GFF4157	0.74	-0.4
4,182,624	+		GFF4157	0.74	+0.5
4,182,625	-		GFF4157	0.74	-2.1
4,182,625	-		GFF4157	0.74	-0.3
4,182,625	-		GFF4157	0.74	+0.4
4,182,627	-		GFF4157	0.74	-0.2
4,182,627	-		GFF4157	0.74	-0.2
4,182,627	-		GFF4157	0.74	-2.5
4,182,627	-		GFF4157	0.74	-1.3
4,182,627	-		GFF4157	0.74	+1.4
4,182,627	-		GFF4157	0.74	-0.0
4,182,627	-		GFF4157	0.74	-1.2
4,182,632	-		GFF4157	0.75	-0.3
4,182,634	+		GFF4157	0.75	+0.8
4,182,634	+		GFF4157	0.75	-0.2
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