Strain Fitness in Sphingobium sp. HT1-2 around GFF4138

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,161,310	-		GFF4137	0.12	-0.0
4,161,310	-		GFF4137	0.12	-1.1
4,161,321	-		GFF4137	0.14	+0.1
4,161,331	+		GFF4137	0.15	-0.9
4,161,339	-		GFF4137	0.15	-1.5
4,161,345	+		GFF4137	0.16	+0.0
4,161,347	+		GFF4137	0.16	-0.5
4,161,347	+		GFF4137	0.16	-1.7
4,161,352	+		GFF4137	0.17	-0.2
4,161,353	-		GFF4137	0.17	+0.0
4,161,358	-		GFF4137	0.17	-0.0
4,161,358	-		GFF4137	0.17	-0.2
4,161,360	+		GFF4137	0.18	-0.8
4,161,360	+		GFF4137	0.18	+0.8
4,161,360	+		GFF4137	0.18	-1.2
4,161,360	+		GFF4137	0.18	-1.8
4,161,360	+		GFF4137	0.18	-1.1
4,161,360	+		GFF4137	0.18	-2.8
4,161,360	-		GFF4137	0.18	-0.7
4,161,368	-		GFF4137	0.18	-1.2
4,161,368	-		GFF4137	0.18	-1.6
4,161,371	+		GFF4137	0.19	-1.2
4,161,377	+		GFF4137	0.19	-0.8
4,161,387	-		GFF4137	0.20	-0.8
4,161,388	+		GFF4137	0.20	-0.6
4,161,396	-		GFF4137	0.21	-0.7
4,161,401	-		GFF4137	0.22	-1.8
4,161,401	-		GFF4137	0.22	-1.8
4,161,412	+		GFF4137	0.23	-1.7
4,161,412	+		GFF4137	0.23	-0.1
4,161,412	+		GFF4137	0.23	+0.7
4,161,418	-		GFF4137	0.24	-0.7
4,161,418	-		GFF4137	0.24	-0.5
4,161,427	+		GFF4137	0.24	+0.1
4,161,427	+		GFF4137	0.24	-0.2
4,161,427	+		GFF4137	0.24	-0.7
4,161,432	+		GFF4137	0.25	-0.2
4,161,440	+		GFF4137	0.26	-0.6
4,161,454	-		GFF4137	0.27	-1.1
4,161,457	-		GFF4137	0.28	-1.5
4,161,475	+		GFF4137	0.29	+1.0
4,161,480	+		GFF4137	0.30	-0.6
4,161,483	-		GFF4137	0.30	+0.2
4,161,483	-		GFF4137	0.30	-1.5
4,161,483	-		GFF4137	0.30	+0.2
4,161,485	-		GFF4137	0.30	+0.2
4,161,487	+		GFF4137	0.31	-0.2
4,161,488	-		GFF4137	0.31	+0.5
4,161,518	-		GFF4137	0.34	+0.5
4,161,525	-		GFF4137	0.35	-0.4
4,161,535	-		GFF4137	0.36	-0.8
4,161,557	+		GFF4137	0.38	-0.5
4,161,557	+		GFF4137	0.38	-1.6
4,161,557	+		GFF4137	0.38	+0.9
4,161,565	-		GFF4137	0.39	-0.2
4,161,598	-		GFF4137	0.42	+1.1
4,161,603	-		GFF4137	0.43	+1.0
4,161,621	+		GFF4137	0.44	+0.4
4,161,626	+		GFF4137	0.45	+1.0
4,161,626	+		GFF4137	0.45	-0.4
4,161,629	-		GFF4137	0.45	+0.0
4,161,629	-		GFF4137	0.45	-0.1
4,161,634	-		GFF4137	0.46	-0.2
4,161,634	-		GFF4137	0.46	-1.2
4,161,635	-		GFF4137	0.46	-0.8
4,161,646	+		GFF4137	0.47	-0.4
4,161,657	+		GFF4137	0.48	+0.2
4,161,667	-		GFF4137	0.49	-0.3
4,161,691	-		GFF4137	0.52	-2.1
4,161,697	-		GFF4137	0.52	-0.7
4,161,707	-		GFF4137	0.53	+0.4
4,161,739	-		GFF4137	0.57	-0.8
4,161,744	-		GFF4137	0.57	-0.3
4,161,750	-		GFF4137	0.58	+0.2
4,161,752	+		GFF4137	0.58	+0.7
4,161,792	-		GFF4137	0.62	+0.4
4,161,797	-		GFF4137	0.63	-1.8
4,161,806	+		GFF4137	0.63	-1.0
4,161,816	-		GFF4137	0.65	-0.1
4,161,834	+		GFF4137	0.66	-2.0
4,161,847	-		GFF4137	0.68	+0.9
4,161,850	-		GFF4137	0.68	-1.3
4,161,882	+		GFF4137	0.71	+1.4
4,161,882	+		GFF4137	0.71	+0.3
4,161,885	-		GFF4137	0.72	+0.7
4,161,890	-		GFF4137	0.72	-1.3
4,161,926	-		GFF4137	0.76	-1.0
4,161,950	-		GFF4137	0.78	+2.2
4,161,957	+		GFF4137	0.79	+0.8
4,161,957	+		GFF4137	0.79	-0.1
4,161,969	-		GFF4137	0.80	-1.0
4,161,978	+		GFF4137	0.81	+0.7
4,161,978	-		GFF4137	0.81	+0.6
4,161,978	-		GFF4137	0.81	+0.4
4,161,989	+		GFF4137	0.82	-0.3
4,162,010	+		GFF4137	0.84	-1.8
4,162,010	+		GFF4137	0.84	+0.5
4,162,021	+		GFF4137	0.86	-0.2
4,162,065	-				+0.4
4,162,067	+				-1.2
4,162,071	+				+0.4
4,162,071	+				+0.5
4,162,071	+				+1.1
4,162,071	+				-1.5
4,162,071	+				-1.5
4,162,071	+				-1.0
4,162,076	+				-0.3
4,162,079	-				-2.8
4,162,079	-				-0.6
4,162,086	-				+1.0
4,162,088	+				-1.5
4,162,096	-				+0.3
4,162,111	-				-0.3
4,162,134	+				+0.9
4,162,134	+				-1.4
4,162,146	+				+0.7
4,162,146	+				-1.8
4,162,154	-				-1.3
4,162,155	+				-2.3
4,162,155	+				+0.0
4,162,163	-				-0.8
4,162,163	-				-0.6
4,162,176	+				+0.1
4,162,179	-				+0.4
4,162,184	-				-1.3
4,162,184	-				+1.2
4,162,240	-				-1.6
4,162,243	+				-0.6
4,162,279	+				+0.0
4,162,287	-				+0.9
4,162,288	-				-0.7
4,162,288	-				-2.7
4,162,324	+				-0.8
4,162,324	+				+0.2
4,162,332	-				-0.3
4,162,333	-				-0.4
4,162,346	-				-0.1
4,162,347	+				-1.4
4,162,353	-				-1.7
4,162,363	-				-0.6
4,162,407	-				-0.2
4,162,438	+		GFF4138	0.13	-1.7
4,162,439	+		GFF4138	0.13	+0.1
4,162,452	+		GFF4138	0.14	+0.9
4,162,462	-		GFF4138	0.15	-0.1
4,162,550	-		GFF4138	0.24	-0.1
4,162,550	-		GFF4138	0.24	-1.2
4,162,570	+		GFF4138	0.26	-0.0
4,162,570	+		GFF4138	0.26	-0.6
4,162,570	+		GFF4138	0.26	-0.6
4,162,570	+		GFF4138	0.26	-2.9
4,162,570	+		GFF4138	0.26	-0.6
4,162,575	+		GFF4138	0.26	+0.9
4,162,578	-		GFF4138	0.26	+0.5
4,162,589	+		GFF4138	0.27	-1.3
4,162,589	+		GFF4138	0.27	-0.6
4,162,590	+		GFF4138	0.28	-1.2
4,162,597	-		GFF4138	0.28	-0.0
4,162,597	-		GFF4138	0.28	-0.5
4,162,603	+		GFF4138	0.29	-0.2
4,162,604	+		GFF4138	0.29	+0.3
4,162,608	+		GFF4138	0.29	-0.3
4,162,611	-		GFF4138	0.30	-1.5
4,162,620	+		GFF4138	0.30	+0.7
4,162,623	+		GFF4138	0.31	-1.5
4,162,628	+		GFF4138	0.31	+0.4
4,162,628	+		GFF4138	0.31	-1.1
4,162,628	+		GFF4138	0.31	+0.2
4,162,628	+		GFF4138	0.31	-1.2
4,162,630	+		GFF4138	0.31	-0.1
4,162,630	+		GFF4138	0.31	-0.7
4,162,630	-		GFF4138	0.31	-0.6
4,162,631	-		GFF4138	0.32	+1.0
4,162,636	-		GFF4138	0.32	-0.3
4,162,636	-		GFF4138	0.32	-0.6
4,162,658	+		GFF4138	0.34	-0.2
4,162,658	+		GFF4138	0.34	-0.1
4,162,658	+		GFF4138	0.34	+0.4
4,162,658	+		GFF4138	0.34	+0.8
4,162,658	+		GFF4138	0.34	+0.5
4,162,663	+		GFF4138	0.35	-1.1
4,162,666	-		GFF4138	0.35	+0.4
4,162,666	-		GFF4138	0.35	-1.3
4,162,666	-		GFF4138	0.35	+0.2
4,162,666	-		GFF4138	0.35	-0.8
4,162,666	-		GFF4138	0.35	-1.3
4,162,671	-		GFF4138	0.35	-0.1
4,162,694	-		GFF4138	0.38	-0.2
4,162,720	-		GFF4138	0.40	-0.3
4,162,745	+		GFF4138	0.43	+1.2
4,162,751	-		GFF4138	0.43	-1.3
4,162,758	-		GFF4138	0.44	+0.7
4,162,765	+		GFF4138	0.45	-0.7
4,162,765	+		GFF4138	0.45	-1.3
4,162,771	-		GFF4138	0.45	-1.8
4,162,777	-		GFF4138	0.46	-1.1
4,162,780	+		GFF4138	0.46	+0.8
4,162,780	+		GFF4138	0.46	-0.6
4,162,791	+		GFF4138	0.47	+1.1
4,162,837	-		GFF4138	0.52	-1.3
4,162,838	+		GFF4138	0.52	-0.5
4,162,838	+		GFF4138	0.52	+1.4
4,162,838	+		GFF4138	0.52	-0.2
4,162,857	+		GFF4138	0.54	-0.6
4,162,865	-		GFF4138	0.54	-0.3
4,162,884	+		GFF4138	0.56	+0.3
4,162,891	-		GFF4138	0.57	-0.6
4,162,897	-		GFF4138	0.58	+0.2
4,162,904	-		GFF4138	0.58	-0.8
4,162,904	-		GFF4138	0.58	-1.8
4,162,904	-		GFF4138	0.58	+0.0
4,162,904	-		GFF4138	0.58	-0.3
4,162,920	+		GFF4138	0.60	-0.8
4,162,930	+		GFF4138	0.61	+0.4
4,162,931	-		GFF4138	0.61	-1.7
4,162,948	+		GFF4138	0.63	+1.1
4,162,958	+		GFF4138	0.64	-1.5
4,162,961	+		GFF4138	0.64	+0.7
4,162,961	-		GFF4138	0.64	+1.0
4,162,963	+		GFF4138	0.64	-0.5
4,162,963	+		GFF4138	0.64	-0.1
4,162,963	+		GFF4138	0.64	-0.3
4,162,963	+		GFF4138	0.64	-0.3
4,162,963	+		GFF4138	0.64	+0.2
4,162,963	+		GFF4138	0.64	+0.7
4,162,963	+		GFF4138	0.64	-0.6
4,162,971	-		GFF4138	0.65	-1.1
4,162,971	-		GFF4138	0.65	-1.0
4,163,028	+		GFF4138	0.70	-1.3
4,163,031	-		GFF4138	0.71	-0.2
4,163,038	+		GFF4138	0.71	+1.2
4,163,038	+		GFF4138	0.71	-1.9
4,163,038	+		GFF4138	0.71	+0.4
4,163,038	+		GFF4138	0.71	-1.8
4,163,038	+		GFF4138	0.71	-0.3
4,163,038	+		GFF4138	0.71	-2.1
4,163,038	+		GFF4138	0.71	+0.2
4,163,038	+		GFF4138	0.71	+0.1
4,163,038	+		GFF4138	0.71	-1.2
4,163,038	+		GFF4138	0.71	-0.2
4,163,046	-		GFF4138	0.72	-0.3
4,163,046	-		GFF4138	0.72	+0.0
4,163,046	-		GFF4138	0.72	-1.5
4,163,046	-		GFF4138	0.72	+0.2
4,163,046	-		GFF4138	0.72	+0.7
4,163,046	-		GFF4138	0.72	-1.5
4,163,046	-		GFF4138	0.72	-1.7
4,163,046	-		GFF4138	0.72	-0.1
4,163,046	-		GFF4138	0.72	-2.0
4,163,046	-		GFF4138	0.72	-1.2
4,163,046	-		GFF4138	0.72	+0.2
4,163,046	-		GFF4138	0.72	-1.7
4,163,046	-		GFF4138	0.72	-3.0
4,163,048	+		GFF4138	0.72	-0.8
4,163,051	-		GFF4138	0.73	-0.9
4,163,082	+		GFF4138	0.76	+0.2
4,163,130	+		GFF4138	0.80	+0.1
4,163,144	-		GFF4138	0.82	-2.6
4,163,147	+		GFF4138	0.82	+0.1
4,163,162	-		GFF4138	0.83	-2.8
4,163,162	-		GFF4138	0.83	-0.2
4,163,171	+		GFF4138	0.84	+0.7
4,163,171	+		GFF4138	0.84	-0.4
4,163,179	-		GFF4138	0.85	-2.3
4,163,179	-		GFF4138	0.85	+0.2
4,163,188	+		GFF4138	0.86	-1.9
4,163,192	+		GFF4138	0.86	+0.0
4,163,197	+		GFF4138	0.87	-1.2
4,163,200	-		GFF4138	0.87	-0.2
4,163,205	+		GFF4138	0.88	-0.5
4,163,205	-		GFF4138	0.88	+0.6
4,163,205	-		GFF4138	0.88	-0.6
4,163,206	+		GFF4138	0.88	-0.8
4,163,211	+		GFF4138	0.88	-1.6
4,163,214	-		GFF4138	0.89	-0.1
4,163,214	-		GFF4138	0.89	-2.1
4,163,232	-				-1.6
4,163,241	+				+0.4
4,163,246	+				-0.8
4,163,246	+				+1.2
4,163,256	-				-0.2
4,163,256	-				-0.3
4,163,258	+				+0.7
4,163,261	-				-1.2
4,163,271	-				-0.1
4,163,304	+				-1.0
4,163,312	-				+0.7
4,163,317	-				-0.8
4,163,319	+				+0.1
4,163,324	+				-1.6
4,163,327	-				+1.2
4,163,327	-				-1.7
4,163,340	+				+0.4
4,163,344	-				-0.5
4,163,354	+				-1.0
4,163,354	+				-0.8
4,163,354	+				+1.9
4,163,354	+				+0.1
4,163,354	+				-0.5
4,163,362	-				-0.8
4,163,410	-				-0.3
4,163,412	+				-1.3
4,163,453	+		GFF4139	0.12	-1.5
4,163,453	+		GFF4139	0.12	+1.2
4,163,453	+		GFF4139	0.12	-2.6
4,163,453	+		GFF4139	0.12	-0.7
4,163,461	-		GFF4139	0.13	-0.3
4,163,461	-		GFF4139	0.13	+0.3
4,163,461	-		GFF4139	0.13	-1.6
4,163,461	-		GFF4139	0.13	+0.0
4,163,461	-		GFF4139	0.13	-1.5
4,163,461	-		GFF4139	0.13	-0.2
4,163,530	+		GFF4139	0.22	-1.3
4,163,534	+		GFF4139	0.23	+0.8
4,163,538	-		GFF4139	0.23	-2.3
4,163,542	-		GFF4139	0.24	-0.6
4,163,547	+		GFF4139	0.25	+1.1
4,163,556	+		GFF4139	0.26	+0.8
4,163,575	+		GFF4139	0.28	-0.8
4,163,583	-		GFF4139	0.30	+0.1
4,163,583	-		GFF4139	0.30	-1.9
4,163,583	-		GFF4139	0.30	-1.4
4,163,589	-		GFF4139	0.30	+0.5
4,163,593	+		GFF4139	0.31	+0.2
4,163,598	+		GFF4139	0.32	-0.6
4,163,598	+		GFF4139	0.32	-0.2
4,163,598	+		GFF4139	0.32	-1.6
4,163,603	+		GFF4139	0.32	-0.2
4,163,606	-		GFF4139	0.33	-1.6
4,163,606	-		GFF4139	0.33	-0.5
4,163,606	-		GFF4139	0.33	-1.3
4,163,606	-		GFF4139	0.33	-1.0
4,163,652	+		GFF4139	0.39	-1.1
4,163,652	+		GFF4139	0.39	+0.1
4,163,652	+		GFF4139	0.39	-1.2
4,163,660	-		GFF4139	0.40	-1.1
4,163,671	+		GFF4139	0.42	-1.5
4,163,686	-		GFF4139	0.44	+0.8
4,163,696	+		GFF4139	0.45	-2.1
4,163,741	+		GFF4139	0.52	-0.4
4,163,741	+		GFF4139	0.52	+0.7
4,163,742	-		GFF4139	0.52	-0.3
4,163,760	-		GFF4139	0.54	-1.2
4,163,760	-		GFF4139	0.54	-0.8
4,163,765	-		GFF4139	0.55	-2.6
4,163,770	-		GFF4139	0.56	+1.0
4,163,784	-		GFF4139	0.57	+0.2
4,163,788	-		GFF4139	0.58	+0.8
4,163,827	-		GFF4139	0.63	-0.3
4,163,827	-		GFF4139	0.63	-0.8
4,163,827	-		GFF4139	0.63	-0.8
4,163,882	+		GFF4139	0.71	-0.7
4,163,890	-		GFF4139	0.72	+0.0
4,163,923	+		GFF4139	0.77	-0.2
4,163,960	-		GFF4139	0.82	-1.5
4,163,963	+		GFF4139	0.82	-0.7
4,164,020	+				+0.7
4,164,056	-				-0.1
4,164,056	-				-1.3
4,164,074	+				-0.5
4,164,088	-				+0.2
4,164,092	-				-1.8
4,164,095	-				-2.0
4,164,100	+				-0.1
4,164,132	+				-0.5
4,164,139	-				+0.5
4,164,141	-				-1.4
4,164,142	+				-1.3
4,164,143	+				+1.0
4,164,151	-				-0.9
4,164,151	-				-2.2
4,164,151	-				+0.3
4,164,151	-				-1.7
4,164,155	+				+0.8
4,164,162	+				-0.8
4,164,170	-				-1.0
4,164,170	-				+0.1
4,164,170	-				-0.3
4,164,178	+				+1.2
4,164,178	+				-2.4
4,164,183	+				+0.8
4,164,191	-				+1.1