Strain Fitness in Sphingobium sp. HT1-2 around GFF4075

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,085,502	-				+0.2
4,085,502	-				-0.0
4,085,502	-				+0.0
4,085,507	-				-1.0
4,085,507	-				+0.2
4,085,520	-				-1.2
4,085,525	-				+0.3
4,085,531	-				-2.0
4,085,569	-				+0.9
4,085,574	-				+0.7
4,085,603	+				-0.1
4,085,616	+				-0.0
4,085,616	+				-1.4
4,085,616	+				-0.6
4,085,616	+				+0.2
4,085,616	+				-0.8
4,085,616	+				+1.1
4,085,624	+				-0.4
4,085,625	+				-1.2
4,085,633	-				+1.3
4,085,640	+				-0.2
4,085,681	-		GFF4073	0.20	+0.3
4,085,681	-		GFF4073	0.20	-0.5
4,085,706	+		GFF4073	0.26	+0.2
4,085,706	+		GFF4073	0.26	+0.4
4,085,706	+		GFF4073	0.26	-1.2
4,085,706	+		GFF4073	0.26	+1.6
4,085,706	+		GFF4073	0.26	+0.1
4,085,706	+		GFF4073	0.26	-0.3
4,085,711	+		GFF4073	0.27	-0.2
4,085,714	-		GFF4073	0.28	+0.6
4,085,719	-		GFF4073	0.29	-0.7
4,085,721	+		GFF4073	0.30	-0.4
4,085,721	+		GFF4073	0.30	-0.3
4,085,729	-		GFF4073	0.32	-0.3
4,085,753	+		GFF4073	0.38	-0.3
4,085,762	+		GFF4073	0.40	-0.8
4,085,798	-		GFF4073	0.49	-1.5
4,085,811	+		GFF4073	0.52	-2.0
4,085,822	+		GFF4073	0.55	+0.5
4,085,842	+		GFF4073	0.60	+0.1
4,085,850	-		GFF4073	0.62	-0.1
4,085,874	+		GFF4073	0.68	-0.2
4,085,879	+		GFF4073	0.69	-0.1
4,085,879	+		GFF4073	0.69	-0.6
4,085,879	+		GFF4073	0.69	-0.6
4,085,887	-		GFF4073	0.71	-0.4
4,085,997	+				-1.1
4,085,997	+				-0.8
4,086,005	-				+0.1
4,086,007	-				+1.0
4,086,043	+				-0.8
4,086,076	-		GFF4074	0.12	-0.5
4,086,104	-		GFF4074	0.20	-1.6
4,086,258	-		GFF4074	0.64	+0.1
4,086,263	-		GFF4074	0.65	+0.2
4,086,325	+		GFF4074	0.83	-0.1
4,086,344	+		GFF4074	0.88	+0.0
4,086,371	-				-0.7
4,086,377	+				+0.2
4,086,395	-				+1.6
4,086,405	-				-0.1
4,086,414	-				-0.3
4,086,421	+				+0.4
4,086,508	+				-0.0
4,086,520	+				-0.1
4,086,525	+				-0.5
4,086,528	-				-1.8
4,086,591	+				+0.5
4,086,592	+				-0.7
4,086,592	+				-2.1
4,086,597	+				+0.0
4,086,600	-				-0.4
4,086,600	-				+0.2
4,086,602	+				-0.5
4,086,605	-				-0.4
4,086,659	+		GFF4075	0.13	-1.0
4,086,678	-		GFF4075	0.14	+0.0
4,086,694	+		GFF4075	0.15	+0.5
4,086,835	-		GFF4075	0.26	-0.0
4,086,844	-		GFF4075	0.26	+0.6
4,086,844	-		GFF4075	0.26	-1.4
4,086,859	-		GFF4075	0.28	-0.3
4,086,859	-		GFF4075	0.28	-1.1
4,086,859	-		GFF4075	0.28	-1.0
4,086,885	+		GFF4075	0.30	-0.8
4,086,885	+		GFF4075	0.30	-1.8
4,086,885	+		GFF4075	0.30	-0.2
4,086,893	-		GFF4075	0.30	-0.1
4,086,893	-		GFF4075	0.30	-2.1
4,086,893	-		GFF4075	0.30	-0.2
4,086,893	-		GFF4075	0.30	-2.7
4,086,893	-		GFF4075	0.30	-0.8
4,086,893	-		GFF4075	0.30	+0.5
4,086,893	-		GFF4075	0.30	-2.1
4,086,893	-		GFF4075	0.30	-0.5
4,086,893	-		GFF4075	0.30	-0.1
4,086,903	-		GFF4075	0.31	+1.3
4,086,903	-		GFF4075	0.31	-0.7
4,086,904	-		GFF4075	0.31	+0.3
4,086,904	-		GFF4075	0.31	-0.5
4,086,904	-		GFF4075	0.31	+0.0
4,086,904	-		GFF4075	0.31	-1.4
4,086,916	-		GFF4075	0.32	-2.6
4,086,916	-		GFF4075	0.32	-0.7
4,086,921	-		GFF4075	0.32	+0.9
4,086,921	-		GFF4075	0.32	-0.5
4,086,921	-		GFF4075	0.32	-1.1
4,086,921	-		GFF4075	0.32	-2.3
4,086,921	-		GFF4075	0.32	+0.5
4,086,921	-		GFF4075	0.32	+0.5
4,086,921	-		GFF4075	0.32	-1.3
4,086,921	-		GFF4075	0.32	-0.8
4,086,921	-		GFF4075	0.32	+0.7
4,086,968	+		GFF4075	0.36	-0.6
4,086,968	+		GFF4075	0.36	-1.0
4,086,968	+		GFF4075	0.36	-0.6
4,086,968	+		GFF4075	0.36	-2.7
4,087,014	+		GFF4075	0.39	-0.7
4,087,022	-		GFF4075	0.40	-1.8
4,087,061	+		GFF4075	0.42	+0.7
4,087,061	+		GFF4075	0.42	-0.8
4,087,068	-		GFF4075	0.43	-0.7
4,087,069	-		GFF4075	0.43	-0.6
4,087,069	-		GFF4075	0.43	-2.5
4,087,076	-		GFF4075	0.44	+0.1
4,087,101	-		GFF4075	0.45	-0.5
4,087,103	+		GFF4075	0.46	+2.0
4,087,127	-		GFF4075	0.47	-1.7
4,087,127	-		GFF4075	0.47	-1.1
4,087,127	-		GFF4075	0.47	-0.7
4,087,127	-		GFF4075	0.47	-2.6
4,087,127	-		GFF4075	0.47	-0.3
4,087,127	-		GFF4075	0.47	-1.8
4,087,127	-		GFF4075	0.47	-2.1
4,087,151	+		GFF4075	0.49	-0.2
4,087,172	+		GFF4075	0.51	-0.3
4,087,188	+		GFF4075	0.52	-0.0
4,087,203	-		GFF4075	0.53	+1.2
4,087,235	-		GFF4075	0.55	-1.0
4,087,240	-		GFF4075	0.56	+0.7
4,087,251	+		GFF4075	0.56	-1.1
4,087,251	+		GFF4075	0.56	+0.2
4,087,251	+		GFF4075	0.56	-0.7
4,087,259	-		GFF4075	0.57	-1.1
4,087,259	-		GFF4075	0.57	-2.5
4,087,264	+		GFF4075	0.57	-0.0
4,087,272	-		GFF4075	0.58	-1.2
4,087,310	+		GFF4075	0.61	+0.5
4,087,310	+		GFF4075	0.61	+0.7
4,087,310	+		GFF4075	0.61	-0.6
4,087,310	+		GFF4075	0.61	-0.8
4,087,310	+		GFF4075	0.61	-1.1
4,087,310	+		GFF4075	0.61	+1.5
4,087,310	+		GFF4075	0.61	-0.7
4,087,318	-		GFF4075	0.61	+0.8
4,087,318	-		GFF4075	0.61	+0.2
4,087,318	-		GFF4075	0.61	-2.4
4,087,320	+		GFF4075	0.62	-0.7
4,087,320	+		GFF4075	0.62	+0.1
4,087,320	+		GFF4075	0.62	-0.3
4,087,320	+		GFF4075	0.62	-2.4
4,087,320	+		GFF4075	0.62	+0.7
4,087,320	+		GFF4075	0.62	-1.8
4,087,328	-		GFF4075	0.62	-0.8
4,087,328	-		GFF4075	0.62	-2.5
4,087,334	+		GFF4075	0.63	+0.5
4,087,334	+		GFF4075	0.63	-1.4
4,087,334	+		GFF4075	0.63	-1.5
4,087,334	+		GFF4075	0.63	-1.3
4,087,334	+		GFF4075	0.63	+0.6
4,087,334	+		GFF4075	0.63	+2.0
4,087,334	+		GFF4075	0.63	+0.4
4,087,392	+		GFF4075	0.67	-2.2
4,087,392	+		GFF4075	0.67	-2.0
4,087,405	-		GFF4075	0.68	+0.5
4,087,407	+		GFF4075	0.68	+1.2
4,087,407	+		GFF4075	0.68	-0.1
4,087,410	-		GFF4075	0.68	-2.2
4,087,415	-		GFF4075	0.69	+0.0
4,087,415	-		GFF4075	0.69	-0.7
4,087,415	-		GFF4075	0.69	+0.2
4,087,415	-		GFF4075	0.69	+0.9
4,087,422	+		GFF4075	0.69	-1.0
4,087,429	+		GFF4075	0.70	+0.6
4,087,430	-		GFF4075	0.70	+1.7
4,087,459	+		GFF4075	0.72	-1.7
4,087,459	+		GFF4075	0.72	-2.2
4,087,482	+		GFF4075	0.73	-0.2
4,087,513	+		GFF4075	0.76	+0.6
4,087,521	-		GFF4075	0.76	+0.5
4,087,521	-		GFF4075	0.76	-1.8
4,087,556	-		GFF4075	0.79	-1.0
4,087,585	-		GFF4075	0.81	-2.1
4,087,602	-		GFF4075	0.82	-0.8
4,087,608	+		GFF4075	0.83	-0.5
4,087,615	+		GFF4075	0.83	-1.0
4,087,618	+		GFF4075	0.83	+1.8
4,087,621	-		GFF4075	0.84	-0.3
4,087,671	+		GFF4075	0.87	-0.3
4,087,671	+		GFF4075	0.87	-1.0
4,087,678	+		GFF4075	0.88	-0.2
4,087,678	-		GFF4075	0.88	-1.4
4,087,679	-		GFF4075	0.88	+0.5
4,087,685	-		GFF4075	0.88	-0.3
4,087,686	-		GFF4075	0.88	-2.3
4,087,727	-				-0.0
4,087,762	+				+0.5
4,087,766	-				+2.7
4,087,768	-				-1.2
4,087,768	-				+0.0
4,087,770	-				-0.9
4,087,803	+				-0.3
4,087,811	-				-2.6
4,087,815	+				-1.2
4,087,815	+				-0.4
4,087,823	-				+0.2
4,087,823	-				+1.3
4,087,828	-				+0.5
4,087,840	-				-1.5
4,087,854	-				-0.6
4,087,861	+				+0.5
4,087,875	-				+0.7
4,087,893	-				+0.1
4,087,914	-				+0.1
4,087,957	-				-1.9
4,087,964	-				+2.7
4,087,972	+				-1.9
4,087,980	-				-1.1
4,088,048	-		GFF4076	0.14	-1.8
4,088,109	+		GFF4076	0.23	+0.0
4,088,121	+		GFF4076	0.24	-1.4
4,088,121	+		GFF4076	0.24	-0.8
4,088,121	+		GFF4076	0.24	-1.0
4,088,129	-		GFF4076	0.26	-1.3
4,088,129	-		GFF4076	0.26	+0.3
4,088,142	+		GFF4076	0.28	-1.2
4,088,148	-		GFF4076	0.29	+0.3
4,088,150	-		GFF4076	0.29	-1.7
4,088,150	-		GFF4076	0.29	-1.2
4,088,151	-		GFF4076	0.29	-0.8
4,088,155	+		GFF4076	0.30	-1.0
4,088,155	-		GFF4076	0.30	+0.5
4,088,184	+		GFF4076	0.34	-0.1
4,088,215	-		GFF4076	0.39	-1.7
4,088,327	-		GFF4076	0.55	-0.3
4,088,327	-		GFF4076	0.55	+0.4
4,088,327	-		GFF4076	0.55	-1.1
4,088,365	+		GFF4076	0.61	+0.2
4,088,370	+		GFF4076	0.62	-1.2
4,088,388	+		GFF4076	0.65	+0.5
4,088,388	+		GFF4076	0.65	+0.8
4,088,388	+		GFF4076	0.65	+1.5
4,088,396	-		GFF4076	0.66	-1.6
4,088,479	-		GFF4076	0.78	-2.2
4,088,479	-		GFF4076	0.78	+0.6
4,088,571	+				-1.9
4,088,576	-				+0.5
4,088,579	-				+1.0
4,088,579	-				-1.3
4,088,579	-				+0.5
4,088,592	-				-0.1
4,088,633	-				-1.7
4,088,662	-				-0.2
4,088,684	+				+0.1