Strain Fitness in Sphingobium sp. HT1-2 around GFF4058

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,072,576	+				-1.3
4,072,581	+				-0.5
4,072,581	+				-0.3
4,072,586	+				-0.7
4,072,586	+				+0.4
4,072,589	-				-0.3
4,072,589	-				-0.6
4,072,589	-				-1.8
4,072,589	-				-1.0
4,072,589	-				+0.6
4,072,589	-				-0.7
4,072,589	-				+0.8
4,072,591	+				-0.8
4,072,596	+				+0.1
4,072,599	-				+0.9
4,072,604	-				-1.0
4,072,636	-				+0.3
4,072,638	+				-0.0
4,072,646	-				+0.7
4,072,665	+				-1.7
4,072,665	+				-1.0
4,072,665	+				-0.9
4,072,665	+				-1.6
4,072,665	+				-0.8
4,072,665	+				-0.6
4,072,665	+				-2.4
4,072,665	+				-0.9
4,072,673	-				+1.3
4,072,673	-				-0.3
4,072,673	-				-0.3
4,072,673	-				+0.1
4,072,673	-				-0.3
4,072,673	-				+1.5
4,072,697	-				-0.6
4,072,698	-				-1.4
4,072,705	-				-0.6
4,072,711	+				-0.6
4,072,729	-				+0.8
4,072,769	+				-0.5
4,072,780	+				-0.2
4,072,792	+				+0.1
4,072,811	-				-1.4
4,072,811	-				-0.9
4,072,812	-				-0.4
4,072,819	-				-1.6
4,072,821	+				+0.8
4,072,821	+				-1.5
4,072,824	+				+0.0
4,072,826	+				+0.7
4,072,829	-				-1.6
4,072,832	-				-0.5
4,072,834	-				-1.2
4,072,834	-				+0.0
4,072,834	-				+0.7
4,072,834	-				-1.5
4,072,841	+				+0.3
4,072,849	-				-0.7
4,072,863	+				-0.8
4,072,863	+				-1.9
4,072,876	-		GFF4057	0.12	-0.6
4,072,906	+		GFF4057	0.16	-1.9
4,072,907	+		GFF4057	0.16	-1.2
4,072,921	-		GFF4057	0.18	-0.5
4,072,932	+		GFF4057	0.19	-1.4
4,072,937	+		GFF4057	0.20	-1.5
4,072,939	-		GFF4057	0.20	+0.0
4,072,943	-		GFF4057	0.21	+0.5
4,072,970	-		GFF4057	0.24	-0.2
4,072,979	+		GFF4057	0.25	+1.5
4,073,022	-		GFF4057	0.31	-1.5
4,073,030	-		GFF4057	0.32	+0.4
4,073,034	+		GFF4057	0.33	-1.0
4,073,044	-		GFF4057	0.34	-2.5
4,073,044	-		GFF4057	0.34	-1.7
4,073,054	+		GFF4057	0.35	+0.5
4,073,057	-		GFF4057	0.36	+1.6
4,073,063	+		GFF4057	0.37	-0.0
4,073,063	+		GFF4057	0.37	-0.0
4,073,063	+		GFF4057	0.37	-1.4
4,073,071	-		GFF4057	0.38	-0.1
4,073,071	-		GFF4057	0.38	+0.0
4,073,076	-		GFF4057	0.38	+0.1
4,073,079	-		GFF4057	0.39	+1.3
4,073,080	+		GFF4057	0.39	+0.3
4,073,086	+		GFF4057	0.40	+0.4
4,073,094	-		GFF4057	0.41	+1.1
4,073,110	+		GFF4057	0.43	-0.5
4,073,110	+		GFF4057	0.43	-0.3
4,073,110	+		GFF4057	0.43	-0.1
4,073,198	+		GFF4057	0.55	-0.0
4,073,206	-		GFF4057	0.56	-0.0
4,073,230	+		GFF4057	0.59	-0.5
4,073,249	+		GFF4057	0.61	-1.1
4,073,249	+		GFF4057	0.61	-0.3
4,073,249	+		GFF4057	0.61	-0.5
4,073,308	+		GFF4057	0.69	-1.3
4,073,323	-		GFF4057	0.71	+0.1
4,073,341	-		GFF4057	0.74	-0.6
4,073,341	-		GFF4057	0.74	+1.2
4,073,367	+		GFF4057	0.77	-0.6
4,073,380	-		GFF4057	0.79	-0.9
4,073,392	+		GFF4057	0.80	-2.2
4,073,405	-		GFF4057	0.82	-0.3
4,073,433	-		GFF4057	0.86	-0.4
4,073,471	-				+1.4
4,073,482	-				-1.4
4,073,494	-				-0.5
4,073,519	+				-0.9
4,073,575	-				-1.3
4,073,578	+				+0.7
4,073,612	+				+0.6
4,073,616	+				+0.8
4,073,626	+				-0.6
4,073,650	-				-0.2
4,073,662	+				-0.9
4,073,670	-				-1.0
4,073,672	+				-0.7
4,073,674	+				-2.4
4,073,675	-				+0.4
4,073,682	-		GFF4058	0.10	-0.7
4,073,682	-		GFF4058	0.10	-0.3
4,073,711	-		GFF4058	0.13	-0.7
4,073,760	+		GFF4058	0.17	+0.8
4,073,760	+		GFF4058	0.17	-1.7
4,073,760	+		GFF4058	0.17	-0.6
4,073,768	-		GFF4058	0.17	+0.2
4,073,782	-		GFF4058	0.18	+0.3
4,073,782	-		GFF4058	0.18	+0.1
4,073,795	+		GFF4058	0.19	+1.2
4,073,812	+		GFF4058	0.21	+1.0
4,073,813	-		GFF4058	0.21	-0.3
4,073,814	+		GFF4058	0.21	-1.3
4,073,818	-		GFF4058	0.21	-0.3
4,073,829	-		GFF4058	0.22	-0.7
4,073,837	-		GFF4058	0.22	-3.1
4,073,846	-		GFF4058	0.23	-0.2
4,073,866	+		GFF4058	0.25	+0.6
4,073,874	-		GFF4058	0.25	-1.3
4,073,884	-		GFF4058	0.26	-0.5
4,073,891	+		GFF4058	0.27	+0.0
4,073,891	+		GFF4058	0.27	+0.1
4,073,891	+		GFF4058	0.27	+1.2
4,073,891	+		GFF4058	0.27	+0.1
4,073,891	+		GFF4058	0.27	+0.7
4,073,894	-		GFF4058	0.27	-1.2
4,073,899	-		GFF4058	0.27	+0.4
4,073,899	-		GFF4058	0.27	+0.4
4,073,899	-		GFF4058	0.27	+0.4
4,073,924	-		GFF4058	0.29	-1.9
4,073,941	-		GFF4058	0.31	-1.2
4,073,952	-		GFF4058	0.31	-0.5
4,073,965	+		GFF4058	0.32	+0.3
4,073,965	+		GFF4058	0.32	+1.7
4,073,978	-		GFF4058	0.33	+0.8
4,073,980	+		GFF4058	0.34	-0.4
4,074,018	+		GFF4058	0.37	-1.0
4,074,048	+		GFF4058	0.39	-1.1
4,074,049	+		GFF4058	0.39	-0.3
4,074,049	+		GFF4058	0.39	-0.4
4,074,049	+		GFF4058	0.39	+0.1
4,074,056	-		GFF4058	0.39	-0.0
4,074,056	-		GFF4058	0.39	-0.3
4,074,056	-		GFF4058	0.39	-0.3
4,074,061	-		GFF4058	0.40	-0.3
4,074,062	-		GFF4058	0.40	-1.0
4,074,101	+		GFF4058	0.43	-0.7
4,074,110	+		GFF4058	0.44	-0.7
4,074,112	+		GFF4058	0.44	+0.7
4,074,119	-		GFF4058	0.44	-0.7
4,074,127	-		GFF4058	0.45	+0.8
4,074,149	-		GFF4058	0.47	-0.2
4,074,151	+		GFF4058	0.47	+0.8
4,074,153	+		GFF4058	0.47	+1.2
4,074,182	-		GFF4058	0.49	+1.0
4,074,192	+		GFF4058	0.50	+0.7
4,074,196	-		GFF4058	0.50	+0.7
4,074,203	+		GFF4058	0.51	-0.7
4,074,214	-		GFF4058	0.52	-0.1
4,074,216	+		GFF4058	0.52	-1.7
4,074,225	+		GFF4058	0.53	-1.8
4,074,233	-		GFF4058	0.53	-1.2
4,074,233	-		GFF4058	0.53	-2.3
4,074,289	-		GFF4058	0.58	-0.2
4,074,294	+		GFF4058	0.58	-2.3
4,074,294	+		GFF4058	0.58	+0.4
4,074,302	-		GFF4058	0.59	-2.0
4,074,302	-		GFF4058	0.59	+0.7
4,074,376	+		GFF4058	0.64	+1.1
4,074,376	+		GFF4058	0.64	-2.0
4,074,387	+		GFF4058	0.65	+0.2
4,074,390	-		GFF4058	0.65	-1.8
4,074,394	+		GFF4058	0.66	+0.0
4,074,394	+		GFF4058	0.66	-0.0
4,074,398	+		GFF4058	0.66	-0.2
4,074,398	+		GFF4058	0.66	+0.8
4,074,402	-		GFF4058	0.66	-0.2
4,074,424	-		GFF4058	0.68	+0.1
4,074,452	+		GFF4058	0.70	-0.5
4,074,472	-		GFF4058	0.72	-0.0
4,074,475	+		GFF4058	0.72	-1.4
4,074,490	+		GFF4058	0.73	+0.4
4,074,491	-		GFF4058	0.73	-0.5
4,074,498	-		GFF4058	0.74	-0.7
4,074,498	-		GFF4058	0.74	-0.4
4,074,513	+		GFF4058	0.75	+0.2
4,074,553	-		GFF4058	0.78	-0.5
4,074,555	+		GFF4058	0.78	-1.2
4,074,587	+		GFF4058	0.81	-0.0
4,074,636	-		GFF4058	0.84	+0.3
4,074,646	+		GFF4058	0.85	+0.5
4,074,654	-		GFF4058	0.86	-1.6
4,074,724	-				-1.8
4,074,724	-				+0.2
4,074,752	-				-0.3
4,074,756	+				+0.7
4,074,758	+				+0.2
4,074,762	+				-1.5
4,074,764	-				-0.3
4,074,773	+				+0.9
4,074,794	-				+1.0
4,074,805	+				+0.5
4,074,813	-				+0.4
4,074,813	-				-1.6
4,074,822	+				+0.2
4,074,824	-				-0.1
4,074,849	+				-0.3
4,074,856	+				+0.0
4,074,864	-				-0.3
4,074,866	+				-2.6
4,074,868	+				-0.7
4,074,868	+				-0.4
4,074,868	+				-0.2
4,074,868	+				-2.2
4,074,868	+				-1.5
4,074,868	+				-0.4
4,074,876	-				-0.3
4,074,876	-				-0.6
4,074,876	-				-0.6
4,074,876	-				-0.2
4,074,955	+				+0.1
4,074,959	+				-2.0
4,074,970	+				+0.1
4,074,970	+				-0.6
4,074,970	+				-2.2
4,074,970	+				+0.3
4,074,970	+				+0.4
4,074,970	+				+0.6
4,074,970	+				+0.1
4,074,973	+				-2.1
4,074,978	-				+0.4
4,074,980	+				+0.6
4,075,039	+		GFF4059	0.14	-2.4
4,075,075	+		GFF4059	0.21	-1.7
4,075,075	+		GFF4059	0.21	-0.9
4,075,075	+		GFF4059	0.21	-0.7
4,075,080	+		GFF4059	0.22	+0.1
4,075,081	+		GFF4059	0.22	+1.2
4,075,081	+		GFF4059	0.22	-0.4
4,075,081	+		GFF4059	0.22	+0.4
4,075,088	-		GFF4059	0.23	-0.6
4,075,089	-		GFF4059	0.23	+0.9
4,075,089	-		GFF4059	0.23	-0.6
4,075,089	-		GFF4059	0.23	-1.0
4,075,089	-		GFF4059	0.23	-2.5
4,075,089	-		GFF4059	0.23	+0.2
4,075,089	-		GFF4059	0.23	+0.5
4,075,089	-		GFF4059	0.23	-1.1
4,075,089	-		GFF4059	0.23	+0.8
4,075,089	-		GFF4059	0.23	-1.5
4,075,134	+		GFF4059	0.32	-0.2
4,075,142	-		GFF4059	0.33	-0.8
4,075,142	-		GFF4059	0.33	-0.7
4,075,144	+		GFF4059	0.34	-1.0
4,075,147	-		GFF4059	0.34	-0.4
4,075,170	+		GFF4059	0.38	-1.9
4,075,170	+		GFF4059	0.38	-1.1
4,075,178	-		GFF4059	0.40	-0.2
4,075,178	-		GFF4059	0.40	-0.3
4,075,185	-		GFF4059	0.41	-0.0
4,075,192	-		GFF4059	0.42	-0.1
4,075,209	-		GFF4059	0.45	+0.2
4,075,271	+		GFF4059	0.57	-1.2
4,075,279	-		GFF4059	0.58	-0.7
4,075,283	+		GFF4059	0.59	-0.3
4,075,308	-		GFF4059	0.63	-0.7
4,075,315	+		GFF4059	0.65	-0.0
4,075,332	+		GFF4059	0.68	-0.7
4,075,332	+		GFF4059	0.68	+0.8
4,075,332	+		GFF4059	0.68	+0.0
4,075,340	-		GFF4059	0.69	+1.4
4,075,340	-		GFF4059	0.69	+0.7
4,075,341	+		GFF4059	0.69	-0.1
4,075,349	-		GFF4059	0.71	+0.5
4,075,397	-		GFF4059	0.80	+0.5
4,075,397	-		GFF4059	0.80	+0.9
4,075,402	-		GFF4059	0.81	-0.6
4,075,412	-		GFF4059	0.82	-0.3
4,075,425	+		GFF4059	0.85	-0.3
4,075,425	+		GFF4059	0.85	-0.5
4,075,425	+		GFF4059	0.85	-1.8
4,075,425	+		GFF4059	0.85	+0.9
4,075,425	+		GFF4059	0.85	+0.3
4,075,425	+		GFF4059	0.85	-0.9
4,075,425	+		GFF4059	0.85	-1.3
4,075,425	+		GFF4059	0.85	+1.1
4,075,425	+		GFF4059	0.85	+0.3
4,075,425	+		GFF4059	0.85	-0.8
4,075,433	-		GFF4059	0.86	-0.2
4,075,433	-		GFF4059	0.86	-1.2
4,075,433	-		GFF4059	0.86	-0.8
4,075,433	-		GFF4059	0.86	+0.5
4,075,433	-		GFF4059	0.86	+0.2
4,075,433	-		GFF4059	0.86	-0.9
4,075,433	-		GFF4059	0.86	+0.7
4,075,433	-		GFF4059	0.86	-0.6
4,075,440	+		GFF4059	0.87	+1.1
4,075,464	+				-0.2
4,075,517	+				-0.2
4,075,517	+				+0.3
4,075,517	+				+2.6
4,075,517	+				-0.6
4,075,517	+				-0.2
4,075,535	+				-0.8
4,075,540	+				-0.7
4,075,540	+				+0.1
4,075,543	-				-0.0
4,075,543	-				+1.0
4,075,548	-				+0.7
4,075,552	-				+0.4
4,075,576	+		GFF4060	0.15	-0.0
4,075,602	-		GFF4060	0.20	-1.8
4,075,606	+		GFF4060	0.21	-0.3
4,075,619	-		GFF4060	0.23	+1.0
4,075,624	+		GFF4060	0.24	+0.2
4,075,630	+		GFF4060	0.26	-0.7
4,075,668	-		GFF4060	0.34	-0.6
4,075,670	+		GFF4060	0.34	+0.2
4,075,670	+		GFF4060	0.34	-0.3
4,075,670	+		GFF4060	0.34	+0.6
4,075,675	+		GFF4060	0.35	-1.0
4,075,677	-		GFF4060	0.35	-1.5
4,075,678	-		GFF4060	0.36	-2.8
4,075,678	-		GFF4060	0.36	-1.6
4,075,683	-		GFF4060	0.37	+0.2
4,075,683	-		GFF4060	0.37	-0.1
4,075,693	+		GFF4060	0.39	-1.5
4,075,693	+		GFF4060	0.39	-0.6
4,075,693	+		GFF4060	0.39	+2.3
4,075,693	+		GFF4060	0.39	-0.0
4,075,693	+		GFF4060	0.39	-0.0
4,075,693	+		GFF4060	0.39	-0.2
4,075,693	+		GFF4060	0.39	-1.2
4,075,693	+		GFF4060	0.39	+0.2
4,075,693	+		GFF4060	0.39	-0.2
4,075,693	+		GFF4060	0.39	-0.5
4,075,693	+		GFF4060	0.39	+0.5
4,075,701	-		GFF4060	0.40	+0.4
4,075,701	-		GFF4060	0.40	-0.1
4,075,701	-		GFF4060	0.40	+0.9
4,075,701	-		GFF4060	0.40	-0.5
4,075,701	-		GFF4060	0.40	-1.7
4,075,701	-		GFF4060	0.40	-2.9
4,075,701	-		GFF4060	0.40	-0.2
4,075,701	-		GFF4060	0.40	-1.2
4,075,742	+		GFF4060	0.49	-0.6
4,075,745	-		GFF4060	0.49	+0.1
4,075,750	-		GFF4060	0.50	-1.2
4,075,750	-		GFF4060	0.50	-1.2
4,075,761	+		GFF4060	0.53	+0.1
4,075,786	+		GFF4060	0.58	-0.6
4,075,794	-		GFF4060	0.59	-0.2
4,075,822	-		GFF4060	0.65	-1.1
4,075,832	-		GFF4060	0.67	-0.6
4,075,832	-		GFF4060	0.67	-0.2
4,075,832	-		GFF4060	0.67	-0.9