Strain Fitness in Sphingobium sp. HT1-2 around GFF4020

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,043,643	+				+0.3
4,043,643	+				-0.3
4,043,643	+				-0.8
4,043,643	+				-0.4
4,043,643	+				+0.0
4,043,643	+				-0.1
4,043,643	+				-0.3
4,043,643	+				+0.2
4,043,643	+				-1.1
4,043,643	+				+0.2
4,043,643	+				-1.0
4,043,643	+				-0.3
4,043,651	-				+0.9
4,043,651	-				-0.2
4,043,651	-				+1.3
4,043,651	-				+0.3
4,043,651	-				-0.5
4,043,651	-				+0.9
4,043,651	-				+0.7
4,043,651	-				-1.3
4,043,661	+				-1.9
4,043,662	+				-0.1
4,043,670	-				-0.4
4,043,670	-				+0.3
4,043,670	-				-0.4
4,043,670	-				-0.3
4,043,671	+				-1.1
4,043,674	-				+0.7
4,043,679	-				-0.6
4,043,692	-				-2.0
4,043,708	+		GFF4018	0.12	+0.0
4,043,716	-		GFF4018	0.16	-0.4
4,043,720	+		GFF4018	0.19	+0.1
4,043,725	+		GFF4018	0.21	+0.1
4,043,733	-		GFF4018	0.26	-1.8
4,043,754	+		GFF4018	0.37	-0.4
4,043,761	+		GFF4018	0.41	-1.8
4,043,766	+		GFF4018	0.44	-1.2
4,043,769	-		GFF4018	0.45	-0.4
4,043,823	+		GFF4018	0.75	-0.2
4,043,829	+		GFF4018	0.78	+0.6
4,043,829	+		GFF4018	0.78	+0.8
4,043,829	+		GFF4018	0.78	+1.4
4,043,829	+		GFF4018	0.78	-0.3
4,043,829	+		GFF4018	0.78	-0.4
4,043,831	+		GFF4018	0.79	-0.1
4,043,833	-		GFF4018	0.80	+0.2
4,043,837	-		GFF4018	0.83	-0.4
4,043,837	-		GFF4018	0.83	+0.8
4,043,837	-		GFF4018	0.83	-0.6
4,043,837	-		GFF4018	0.83	-0.4
4,043,837	-		GFF4018	0.83	-0.0
4,043,839	+		GFF4018	0.84	-2.1
4,043,863	+				-2.1
4,043,891	+				+0.2
4,043,899	-				+0.1
4,043,910	+		GFF4019	0.10	-0.3
4,043,910	-		GFF4019	0.10	-0.1
4,043,924	+		GFF4019	0.13	+1.0
4,043,924	+		GFF4019	0.13	-1.6
4,043,933	-		GFF4019	0.15	+0.4
4,043,939	+		GFF4019	0.17	-0.2
4,043,947	+		GFF4019	0.18	+0.8
4,043,947	-		GFF4019	0.18	-0.6
4,043,984	+		GFF4019	0.27	-0.7
4,043,984	+		GFF4019	0.27	-0.2
4,043,994	-		GFF4019	0.29	+1.6
4,043,996	+		GFF4019	0.29	-0.8
4,043,996	+		GFF4019	0.29	-2.1
4,043,996	+		GFF4019	0.29	-1.0
4,044,004	-		GFF4019	0.31	+0.6
4,044,004	-		GFF4019	0.31	+0.1
4,044,007	+		GFF4019	0.32	-0.8
4,044,029	-		GFF4019	0.37	+0.9
4,044,031	-		GFF4019	0.37	-1.3
4,044,038	+		GFF4019	0.39	+1.8
4,044,038	+		GFF4019	0.39	-0.5
4,044,038	+		GFF4019	0.39	+0.6
4,044,038	+		GFF4019	0.39	-1.9
4,044,038	+		GFF4019	0.39	+0.7
4,044,046	-		GFF4019	0.40	+0.2
4,044,046	-		GFF4019	0.40	-1.3
4,044,046	-		GFF4019	0.40	+0.2
4,044,046	-		GFF4019	0.40	+0.6
4,044,046	-		GFF4019	0.40	+1.2
4,044,046	-		GFF4019	0.40	-1.7
4,044,046	-		GFF4019	0.40	+0.7
4,044,046	-		GFF4019	0.40	-0.3
4,044,046	-		GFF4019	0.40	-1.6
4,044,046	-		GFF4019	0.40	-0.6
4,044,069	+		GFF4019	0.46	-1.2
4,044,069	+		GFF4019	0.46	+0.5
4,044,069	+		GFF4019	0.46	-0.3
4,044,069	+		GFF4019	0.46	+0.4
4,044,072	-		GFF4019	0.46	+0.2
4,044,072	-		GFF4019	0.46	-0.8
4,044,077	+		GFF4019	0.47	-2.3
4,044,077	+		GFF4019	0.47	-0.3
4,044,077	+		GFF4019	0.47	+0.7
4,044,077	-		GFF4019	0.47	-0.6
4,044,077	-		GFF4019	0.47	+0.6
4,044,077	-		GFF4019	0.47	-0.5
4,044,085	-		GFF4019	0.49	-1.0
4,044,085	-		GFF4019	0.49	-2.0
4,044,085	-		GFF4019	0.49	+0.8
4,044,085	-		GFF4019	0.49	-0.8
4,044,085	-		GFF4019	0.49	-0.1
4,044,097	+		GFF4019	0.52	+0.2
4,044,112	+		GFF4019	0.55	-1.3
4,044,112	+		GFF4019	0.55	+0.7
4,044,112	+		GFF4019	0.55	+0.8
4,044,112	+		GFF4019	0.55	+0.8
4,044,112	+		GFF4019	0.55	+1.2
4,044,112	+		GFF4019	0.55	+0.7
4,044,112	+		GFF4019	0.55	-2.2
4,044,112	+		GFF4019	0.55	-0.2
4,044,112	+		GFF4019	0.55	-1.1
4,044,127	+		GFF4019	0.59	+1.5
4,044,130	-		GFF4019	0.59	-0.5
4,044,135	-		GFF4019	0.60	-2.4
4,044,158	+		GFF4019	0.66	+0.3
4,044,158	+		GFF4019	0.66	-0.1
4,044,168	+		GFF4019	0.68	-1.1
4,044,168	+		GFF4019	0.68	-0.6
4,044,171	-		GFF4019	0.68	-0.4
4,044,171	-		GFF4019	0.68	+0.5
4,044,176	-		GFF4019	0.70	-0.1
4,044,176	-		GFF4019	0.70	-2.1
4,044,176	-		GFF4019	0.70	-0.3
4,044,176	-		GFF4019	0.70	+0.2
4,044,176	-		GFF4019	0.70	+0.2
4,044,176	-		GFF4019	0.70	-3.8
4,044,218	-		GFF4019	0.79	+0.1
4,044,244	-		GFF4019	0.85	+2.1
4,044,246	-		GFF4019	0.85	-1.6
4,044,248	+		GFF4019	0.86	-0.3
4,044,248	+		GFF4019	0.86	-2.2
4,044,281	-				-2.4
4,044,286	+				-0.3
4,044,294	-				-0.1
4,044,309	-				-1.7
4,044,311	-				+0.1
4,044,313	+				+0.2
4,044,313	+				-0.1
4,044,331	+				-1.5
4,044,331	+				+0.5
4,044,336	+				-0.3
4,044,397	+				+0.4
4,044,399	+				+1.4
4,044,410	+				+0.1
4,044,420	-				-0.7
4,044,434	+				-2.2
4,044,436	+				-2.4
4,044,436	+				-1.1
4,044,444	-				+0.3
4,044,447	+				-0.6
4,044,493	+				-2.9
4,044,540	-				+0.8
4,044,574	+				-0.8
4,044,606	-				-1.7
4,044,655	-		GFF4020	0.14	-0.3
4,044,670	+		GFF4020	0.22	-0.2
4,044,670	+		GFF4020	0.22	-0.4
4,044,693	-		GFF4020	0.34	+1.2
4,044,693	-		GFF4020	0.34	-1.3
4,044,733	-		GFF4020	0.56	-1.5
4,044,739	+		GFF4020	0.60	+0.3
4,044,761	+		GFF4020	0.72	+0.4
4,044,761	+		GFF4020	0.72	+0.1
4,044,769	-		GFF4020	0.76	-0.2
4,044,769	-		GFF4020	0.76	-1.5
4,044,797	-				-0.5
4,044,811	-				-1.3
4,044,815	+				-0.3
4,044,831	-				-1.0
4,044,833	-				+0.2
4,044,865	-				+0.3
4,044,868	+				-0.6
4,044,868	+				-0.5
4,044,876	-				-0.9
4,044,876	-				-0.1
4,044,894	+				+0.6
4,044,894	+				-0.6
4,044,902	-				+1.1
4,044,902	-				-1.3
4,044,916	-				-0.5
4,044,925	+				+0.7
4,044,935	+				+0.3
4,044,935	+				-1.1
4,044,936	+				-0.6
4,044,936	+				-0.4
4,044,944	-				-0.6
4,044,944	-				+0.1
4,044,946	+				-0.2
4,044,948	+				-1.3
4,044,953	+				-0.5
4,044,958	+				-0.2
4,044,958	+				+0.5
4,044,958	+				-0.0
4,044,958	+				-0.3
4,044,958	+				-1.1
4,044,958	+				-2.3
4,044,958	+				+1.0
4,044,958	+				-1.6
4,044,958	+				+0.8
4,044,958	+				+1.4
4,044,966	-				-0.6
4,044,966	-				-1.8
4,044,966	-				+0.1
4,044,966	-				-1.0
4,044,966	-				-0.8
4,044,966	-				+0.1
4,044,966	-				+0.9
4,044,966	-				+1.2
4,044,966	-				-2.0
4,044,966	-				-0.4
4,044,966	-				-0.0
4,044,971	+				-0.0
4,044,971	+				-0.8
4,044,971	+				+0.2
4,044,971	+				-0.5
4,044,971	+				-1.4
4,044,979	-				-0.5
4,044,989	-				-1.0
4,044,994	-				-0.4
4,045,026	+				-2.1
4,045,026	+				+1.3
4,045,044	+				+0.2
4,045,052	-				-3.0
4,045,055	+				-0.9
4,045,065	+				-0.3
4,045,073	-				-1.6
4,045,073	-				-0.2
4,045,086	+				-0.8
4,045,099	-				+0.2
4,045,181	-				-0.8
4,045,186	+				+0.1
4,045,186	+				+1.0
4,045,186	+				-2.8
4,045,186	+				-0.7
4,045,186	+				-0.1
4,045,186	+				+1.1
4,045,186	+				+0.1
4,045,186	+				+0.5
4,045,194	-				+0.4
4,045,194	-				-0.1
4,045,194	-				-1.3
4,045,194	-				-0.1
4,045,194	-				-1.7
4,045,194	-				+0.5
4,045,194	-				-0.1
4,045,194	-				+0.2
4,045,194	-				+0.2
4,045,194	-				-2.1
4,045,211	-		GFF4021	0.16	-0.6
4,045,225	+		GFF4021	0.23	-1.1
4,045,228	-		GFF4021	0.24	-0.0
4,045,233	-		GFF4021	0.26	-0.8
4,045,233	-		GFF4021	0.26	+0.1
4,045,235	+		GFF4021	0.27	+1.1
4,045,237	+		GFF4021	0.28	-0.6
4,045,243	-		GFF4021	0.31	-0.0
4,045,243	-		GFF4021	0.31	-1.1
4,045,248	+		GFF4021	0.33	-1.0
4,045,251	-		GFF4021	0.35	-0.4
4,045,266	+		GFF4021	0.42	-1.0
4,045,268	-		GFF4021	0.43	-0.0
4,045,319	-		GFF4021	0.66	+0.3
4,045,321	+		GFF4021	0.67	-0.4
4,045,363	-		GFF4021	0.87	-2.1
4,045,386	+				+1.7
4,045,388	+				-0.6
4,045,388	+				-2.6
4,045,394	-				+1.2
4,045,396	-				-0.7
4,045,403	-				-0.5
4,045,495	+				-0.8
4,045,495	+				-1.5
4,045,495	+				-2.3