Strain Fitness in Sphingobium sp. HT1-2 around GFF3993

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,025,302	-				+0.1
4,025,339	+				+0.4
4,025,351	+				-1.0
4,025,357	+				-0.3
4,025,357	+				+0.8
4,025,359	-				-0.2
4,025,365	-				-0.3
4,025,369	-				+0.4
4,025,369	-				+0.7
4,025,398	+				+0.3
4,025,399	+				-0.3
4,025,399	-				-0.4
4,025,404	+				-0.3
4,025,406	-				-1.0
4,025,406	-				+0.2
4,025,406	-				+0.6
4,025,406	-				+0.7
4,025,407	-				+0.9
4,025,407	-				+0.7
4,025,411	-				-0.6
4,025,412	-				-0.0
4,025,444	+				-0.4
4,025,444	+				-1.5
4,025,444	+				-0.6
4,025,444	+				-1.0
4,025,444	+				-1.1
4,025,444	+				-0.5
4,025,444	+				-1.3
4,025,447	-				+0.5
4,025,447	-				+0.3
4,025,452	-				-1.1
4,025,452	-				+0.1
4,025,452	-				-0.4
4,025,452	-				-1.9
4,025,452	-				-0.7
4,025,452	-				-0.1
4,025,452	-				-0.7
4,025,471	-				+0.3
4,025,476	-				+0.4
4,025,478	+				+1.2
4,025,478	+				-0.0
4,025,481	-				+0.9
4,025,486	-				-0.6
4,025,486	-				+1.5
4,025,486	-				+0.1
4,025,486	-				+0.5
4,025,486	-				-1.8
4,025,486	-				+0.6
4,025,494	-				+0.9
4,025,496	+				-0.6
4,025,496	+				+0.6
4,025,504	-				-0.3
4,025,505	-				-1.5
4,025,510	+				+0.2
4,025,510	+				-0.7
4,025,510	+				-0.4
4,025,511	-				+0.5
4,025,520	+				+0.6
4,025,552	+				-0.7
4,025,600	+		GFF3992	0.11	+0.5
4,025,612	-		GFF3992	0.12	+1.0
4,025,632	-		GFF3992	0.15	-0.3
4,025,656	+		GFF3992	0.18	+0.9
4,025,672	-		GFF3992	0.20	-1.3
4,025,674	+		GFF3992	0.21	-1.8
4,025,675	-		GFF3992	0.21	-2.0
4,025,677	+		GFF3992	0.21	-0.5
4,025,682	-		GFF3992	0.22	+0.4
4,025,682	-		GFF3992	0.22	-0.6
4,025,682	-		GFF3992	0.22	-2.4
4,025,682	-		GFF3992	0.22	-1.8
4,025,687	+		GFF3992	0.22	-2.1
4,025,698	+		GFF3992	0.24	-0.7
4,025,700	+		GFF3992	0.24	-0.8
4,025,705	+		GFF3992	0.25	+0.9
4,025,705	+		GFF3992	0.25	-1.3
4,025,712	-		GFF3992	0.25	+0.2
4,025,713	-		GFF3992	0.26	-0.1
4,025,713	-		GFF3992	0.26	+1.2
4,025,713	-		GFF3992	0.26	-2.7
4,025,719	+		GFF3992	0.26	-0.9
4,025,719	+		GFF3992	0.26	-0.8
4,025,723	+		GFF3992	0.27	-0.5
4,025,723	+		GFF3992	0.27	+0.2
4,025,727	-		GFF3992	0.27	+0.5
4,025,729	-		GFF3992	0.28	+0.1
4,025,731	-		GFF3992	0.28	+1.7
4,025,733	+		GFF3992	0.28	-1.2
4,025,738	+		GFF3992	0.29	+0.5
4,025,743	+		GFF3992	0.30	-0.6
4,025,746	-		GFF3992	0.30	-0.0
4,025,746	-		GFF3992	0.30	-0.1
4,025,746	-		GFF3992	0.30	+0.8
4,025,746	-		GFF3992	0.30	+0.6
4,025,750	-		GFF3992	0.30	+0.3
4,025,751	-		GFF3992	0.31	+0.3
4,025,751	-		GFF3992	0.31	-1.2
4,025,751	-		GFF3992	0.31	-0.8
4,025,751	-		GFF3992	0.31	-1.8
4,025,751	-		GFF3992	0.31	-0.5
4,025,753	+		GFF3992	0.31	-0.2
4,025,754	+		GFF3992	0.31	+0.3
4,025,761	-		GFF3992	0.32	-2.0
4,025,770	+		GFF3992	0.33	+0.0
4,025,771	+		GFF3992	0.33	-0.7
4,025,771	+		GFF3992	0.33	-0.7
4,025,779	-		GFF3992	0.34	+0.7
4,025,802	+		GFF3992	0.37	-0.5
4,025,802	+		GFF3992	0.37	-0.5
4,025,802	+		GFF3992	0.37	-1.4
4,025,808	-		GFF3992	0.38	+0.9
4,025,810	-		GFF3992	0.38	-0.1
4,025,810	-		GFF3992	0.38	+0.0
4,025,810	-		GFF3992	0.38	-0.3
4,025,819	-		GFF3992	0.39	-0.1
4,025,820	+		GFF3992	0.40	-0.4
4,025,823	+		GFF3992	0.40	-0.7
4,025,825	+		GFF3992	0.40	-2.2
4,025,830	+		GFF3992	0.41	+0.0
4,025,831	-		GFF3992	0.41	-0.8
4,025,831	-		GFF3992	0.41	+1.2
4,025,833	+		GFF3992	0.41	-0.8
4,025,833	+		GFF3992	0.41	-2.4
4,025,833	+		GFF3992	0.41	+0.5
4,025,833	-		GFF3992	0.41	-1.0
4,025,838	+		GFF3992	0.42	+0.0
4,025,841	-		GFF3992	0.42	+0.3
4,025,851	-		GFF3992	0.44	+0.4
4,025,852	-		GFF3992	0.44	+1.0
4,025,867	-		GFF3992	0.46	-0.5
4,025,878	+		GFF3992	0.47	-1.0
4,025,891	-		GFF3992	0.49	-0.0
4,025,899	+		GFF3992	0.50	+1.3
4,025,902	-		GFF3992	0.50	-1.3
4,025,904	+		GFF3992	0.51	+1.2
4,025,904	+		GFF3992	0.51	-2.3
4,025,907	+		GFF3992	0.51	-2.4
4,025,907	-		GFF3992	0.51	-2.0
4,025,909	+		GFF3992	0.51	-0.2
4,025,909	+		GFF3992	0.51	+0.0
4,025,912	-		GFF3992	0.52	+0.5
4,025,915	-		GFF3992	0.52	-0.1
4,025,917	-		GFF3992	0.52	-0.8
4,025,928	+		GFF3992	0.54	-0.2
4,025,928	+		GFF3992	0.54	-0.4
4,025,933	+		GFF3992	0.54	+0.7
4,025,936	-		GFF3992	0.55	-0.4
4,025,968	-		GFF3992	0.59	-0.1
4,026,002	+		GFF3992	0.63	+0.2
4,026,010	-		GFF3992	0.64	+0.8
4,026,032	-		GFF3992	0.67	+0.1
4,026,046	+		GFF3992	0.69	+0.2
4,026,055	+		GFF3992	0.70	-1.3
4,026,063	-		GFF3992	0.71	+0.7
4,026,065	+		GFF3992	0.72	+0.7
4,026,065	+		GFF3992	0.72	-0.4
4,026,065	+		GFF3992	0.72	-1.1
4,026,065	+		GFF3992	0.72	+0.0
4,026,065	+		GFF3992	0.72	-1.4
4,026,070	+		GFF3992	0.72	-1.6
4,026,070	+		GFF3992	0.72	-0.4
4,026,070	+		GFF3992	0.72	-1.4
4,026,070	+		GFF3992	0.72	+0.0
4,026,070	+		GFF3992	0.72	+0.1
4,026,070	+		GFF3992	0.72	-1.0
4,026,070	+		GFF3992	0.72	-1.4
4,026,070	+		GFF3992	0.72	+0.6
4,026,070	+		GFF3992	0.72	-0.7
4,026,070	+		GFF3992	0.72	-0.9
4,026,070	+		GFF3992	0.72	+0.1
4,026,070	+		GFF3992	0.72	-2.0
4,026,073	-		GFF3992	0.73	-1.9
4,026,075	+		GFF3992	0.73	+0.1
4,026,078	-		GFF3992	0.73	-0.5
4,026,078	-		GFF3992	0.73	+1.0
4,026,078	-		GFF3992	0.73	-1.3
4,026,078	-		GFF3992	0.73	+1.2
4,026,078	-		GFF3992	0.73	+1.3
4,026,078	-		GFF3992	0.73	+0.6
4,026,078	-		GFF3992	0.73	-0.1
4,026,078	-		GFF3992	0.73	-1.6
4,026,078	-		GFF3992	0.73	-0.7
4,026,081	+		GFF3992	0.74	+0.5
4,026,081	+		GFF3992	0.74	-0.2
4,026,083	+		GFF3992	0.74	+1.2
4,026,083	-		GFF3992	0.74	+0.1
4,026,091	+		GFF3992	0.75	+1.3
4,026,091	-		GFF3992	0.75	-1.6
4,026,096	+		GFF3992	0.76	-0.1
4,026,096	+		GFF3992	0.76	-0.6
4,026,096	+		GFF3992	0.76	+0.7
4,026,140	-		GFF3992	0.81	-1.9
4,026,140	-		GFF3992	0.81	-2.0
4,026,160	-		GFF3992	0.84	+0.2
4,026,238	+				+0.7
4,026,246	-				-0.3
4,026,266	+				-0.4
4,026,266	+				-1.6
4,026,266	+				+0.1
4,026,274	-				-1.4
4,026,274	-				-0.8
4,026,274	-				-0.0
4,026,279	-				+0.4
4,026,279	-				-0.2
4,026,279	-				-1.6
4,026,281	+				-0.2
4,026,284	-				-0.0
4,026,287	+				+1.3
4,026,294	-				-0.8
4,026,295	-				+0.0
4,026,302	+				-0.8
4,026,308	-				-0.7
4,026,312	+				-0.3
4,026,320	-				+0.2
4,026,327	-				+1.2
4,026,334	+				+0.1
4,026,336	+				-1.1
4,026,368	+				-0.2
4,026,368	+				+0.5
4,026,371	-				+0.3
4,026,373	+				+0.2
4,026,381	-				-0.6
4,026,393	+				-1.9
4,026,411	+				+0.5
4,026,411	+				-0.6
4,026,414	-				-0.1
4,026,414	-				-0.3
4,026,419	-		GFF3993	0.10	-0.7
4,026,441	+		GFF3993	0.12	-1.5
4,026,449	-		GFF3993	0.13	+1.4
4,026,449	-		GFF3993	0.13	+0.2
4,026,449	-		GFF3993	0.13	-1.4
4,026,449	-		GFF3993	0.13	+0.1
4,026,455	+		GFF3993	0.13	-0.3
4,026,459	-		GFF3993	0.14	-1.3
4,026,467	+		GFF3993	0.14	+0.3
4,026,467	+		GFF3993	0.14	+0.5
4,026,472	+		GFF3993	0.15	-0.1
4,026,472	-		GFF3993	0.15	-0.1
4,026,480	-		GFF3993	0.15	-0.4
4,026,498	+		GFF3993	0.17	+0.3
4,026,498	+		GFF3993	0.17	-0.2
4,026,498	-		GFF3993	0.17	-0.9
4,026,499	-		GFF3993	0.17	-2.4
4,026,508	-		GFF3993	0.18	+0.4
4,026,508	-		GFF3993	0.18	+1.7
4,026,510	+		GFF3993	0.18	+0.6
4,026,529	+		GFF3993	0.20	+0.6
4,026,529	+		GFF3993	0.20	+0.6
4,026,535	+		GFF3993	0.20	+0.7
4,026,538	+		GFF3993	0.20	-0.7
4,026,546	-		GFF3993	0.21	-2.5
4,026,560	-		GFF3993	0.22	+0.7
4,026,562	+		GFF3993	0.22	-2.0
4,026,562	+		GFF3993	0.22	-1.3
4,026,599	+		GFF3993	0.25	-1.7
4,026,604	+		GFF3993	0.26	-1.9
4,026,604	-		GFF3993	0.26	-0.3
4,026,609	+		GFF3993	0.26	+0.2
4,026,612	-		GFF3993	0.27	-2.1
4,026,612	-		GFF3993	0.27	+0.3
4,026,614	+		GFF3993	0.27	-0.3
4,026,614	+		GFF3993	0.27	-0.8
4,026,614	+		GFF3993	0.27	+1.4
4,026,619	+		GFF3993	0.27	+0.3
4,026,619	+		GFF3993	0.27	-0.5
4,026,619	+		GFF3993	0.27	-1.4
4,026,619	+		GFF3993	0.27	-2.7
4,026,622	-		GFF3993	0.27	+0.8
4,026,622	-		GFF3993	0.27	-0.3
4,026,624	+		GFF3993	0.28	-1.5
4,026,625	+		GFF3993	0.28	+0.5
4,026,627	-		GFF3993	0.28	-1.3
4,026,627	-		GFF3993	0.28	+0.1
4,026,633	-		GFF3993	0.28	-1.8
4,026,634	+		GFF3993	0.28	-0.5
4,026,637	+		GFF3993	0.29	-1.3
4,026,637	+		GFF3993	0.29	+1.7
4,026,645	-		GFF3993	0.29	+0.7
4,026,661	+		GFF3993	0.31	-2.0
4,026,696	-		GFF3993	0.34	-2.0
4,026,714	-		GFF3993	0.35	-1.1
4,026,714	-		GFF3993	0.35	+0.6
4,026,720	+		GFF3993	0.36	+0.1
4,026,721	-		GFF3993	0.36	-1.1
4,026,721	-		GFF3993	0.36	-0.2
4,026,728	-		GFF3993	0.36	+0.7
4,026,738	-		GFF3993	0.37	-1.7
4,026,741	+		GFF3993	0.37	+0.1
4,026,746	+		GFF3993	0.38	+0.2
4,026,749	-		GFF3993	0.38	+0.2
4,026,750	+		GFF3993	0.38	+0.2
4,026,758	-		GFF3993	0.39	-1.4
4,026,758	-		GFF3993	0.39	+1.1
4,026,765	+		GFF3993	0.39	-1.1
4,026,768	-		GFF3993	0.40	+0.0
4,026,768	-		GFF3993	0.40	-1.6
4,026,775	-		GFF3993	0.40	-0.5
4,026,788	-		GFF3993	0.41	-0.2
4,026,788	-		GFF3993	0.41	+0.5
4,026,788	-		GFF3993	0.41	-0.5
4,026,788	-		GFF3993	0.41	+0.6
4,026,796	-		GFF3993	0.42	-1.4
4,026,797	+		GFF3993	0.42	+0.8
4,026,823	+		GFF3993	0.44	+0.8
4,026,831	-		GFF3993	0.45	-2.7
4,026,831	-		GFF3993	0.45	-1.9
4,026,838	+		GFF3993	0.46	-0.7
4,026,845	-		GFF3993	0.46	-1.0
4,026,846	+		GFF3993	0.46	+0.0
4,026,851	+		GFF3993	0.47	-0.4
4,026,868	+		GFF3993	0.48	+1.5
4,026,884	+		GFF3993	0.49	-1.9
4,026,895	+		GFF3993	0.50	-1.9
4,026,898	-		GFF3993	0.51	-0.3
4,026,903	-		GFF3993	0.51	-0.6
4,026,903	-		GFF3993	0.51	-0.8
4,026,919	+		GFF3993	0.52	+0.3
4,026,965	+		GFF3993	0.56	-0.7
4,026,971	+		GFF3993	0.57	-0.1
4,026,973	-		GFF3993	0.57	+0.6
4,026,999	-		GFF3993	0.59	-0.3
4,027,002	+		GFF3993	0.59	-0.7
4,027,002	+		GFF3993	0.59	+1.7
4,027,010	-		GFF3993	0.60	+1.0
4,027,010	-		GFF3993	0.60	-0.4
4,027,010	-		GFF3993	0.60	+0.3
4,027,010	-		GFF3993	0.60	+1.1
4,027,010	-		GFF3993	0.60	+0.0
4,027,010	-		GFF3993	0.60	+0.8
4,027,010	-		GFF3993	0.60	-0.5
4,027,030	+		GFF3993	0.62	+0.7
4,027,030	+		GFF3993	0.62	-1.4
4,027,030	+		GFF3993	0.62	-0.5
4,027,030	+		GFF3993	0.62	-0.0
4,027,030	+		GFF3993	0.62	+0.2
4,027,030	+		GFF3993	0.62	-0.4
4,027,032	+		GFF3993	0.62	-0.1
4,027,032	+		GFF3993	0.62	-0.9
4,027,037	+		GFF3993	0.62	-3.0
4,027,037	+		GFF3993	0.62	+0.6
4,027,038	+		GFF3993	0.62	-0.2
4,027,038	+		GFF3993	0.62	-1.1
4,027,038	-		GFF3993	0.62	+0.5
4,027,038	-		GFF3993	0.62	-3.0
4,027,040	-		GFF3993	0.62	-1.9
4,027,040	-		GFF3993	0.62	-0.4
4,027,046	-		GFF3993	0.63	+0.5
4,027,064	+		GFF3993	0.64	-1.6
4,027,069	+		GFF3993	0.65	+0.6
4,027,071	+		GFF3993	0.65	+1.6
4,027,071	+		GFF3993	0.65	-0.8
4,027,071	+		GFF3993	0.65	+0.2
4,027,071	+		GFF3993	0.65	-0.8
4,027,071	+		GFF3993	0.65	-1.1
4,027,071	+		GFF3993	0.65	+1.3
4,027,072	-		GFF3993	0.65	+0.3
4,027,079	-		GFF3993	0.66	+0.9
4,027,079	-		GFF3993	0.66	-0.3
4,027,079	-		GFF3993	0.66	+0.3
4,027,079	-		GFF3993	0.66	+0.6
4,027,079	-		GFF3993	0.66	+0.3
4,027,079	-		GFF3993	0.66	+0.0
4,027,081	+		GFF3993	0.66	-0.2
4,027,089	-		GFF3993	0.67	-1.7
4,027,094	-		GFF3993	0.67	-0.6
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