Strain Fitness in Sphingobium sp. HT1-2 around GFF398

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF395 and GFF396 are separated by 94 nucleotidesGFF396 and GFF397 overlap by 10 nucleotidesGFF397 and GFF398 are separated by 27 nucleotidesGFF398 and GFF399 are separated by 127 nucleotidesGFF399 and GFF400 are separated by 72 nucleotides GFF395 - hypothetical protein, at 384,679 to 385,266 GFF395 GFF396 - Biopolymer transport protein ExbD/TolR, at 385,361 to 385,798 GFF396 GFF397 - hypothetical protein, at 385,789 to 385,941 GFF397 GFF398 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 385,969 to 387,966 GFF398 GFF399 - Translation initiation factor 3, at 388,094 to 388,627 GFF399 GFF400 - Possible NADH oxidoreductase, at 388,700 to 389,812 GFF400 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -2 -1 0 1at 384.978 kb on + strand, within GFF395at 384.978 kb on + strand, within GFF395at 384.978 kb on + strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 385.008 kb on - strand, within GFF395at 385.018 kb on + strand, within GFF395at 385.100 kb on + strand, within GFF395at 385.108 kb on - strand, within GFF395at 385.153 kb on - strand, within GFF395at 385.159 kb on + strand, within GFF395at 385.160 kb on + strand, within GFF395at 385.168 kb on - strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.200 kb on + strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.220 kb on + strandat 385.220 kb on + strandat 385.220 kb on + strandat 385.228 kb on - strandat 385.228 kb on - strandat 385.235 kb on + strandat 385.240 kb on + strandat 385.249 kb on - strandat 385.251 kb on + strandat 385.261 kb on + strandat 385.262 kb on + strandat 385.269 kb on - strandat 385.269 kb on - strandat 385.281 kb on + strandat 385.299 kb on - strandat 385.299 kb on - strandat 385.400 kb on - strandat 385.400 kb on - strandat 385.406 kb on - strand, within GFF396at 385.408 kb on + strand, within GFF396at 385.432 kb on + strand, within GFF396at 385.440 kb on - strand, within GFF396at 385.440 kb on - strand, within GFF396at 385.444 kb on + strand, within GFF396at 385.497 kb on + strand, within GFF396at 385.505 kb on - strand, within GFF396at 385.505 kb on - strand, within GFF396at 385.515 kb on - strand, within GFF396at 385.531 kb on + strand, within GFF396at 385.531 kb on + strand, within GFF396at 385.534 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.548 kb on + strand, within GFF396at 385.557 kb on + strand, within GFF396at 385.565 kb on + strand, within GFF396at 385.570 kb on + strand, within GFF396at 385.573 kb on - strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.614 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.621 kb on + strand, within GFF396at 385.621 kb on + strand, within GFF396at 385.629 kb on - strand, within GFF396at 385.633 kb on - strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.660 kb on + strand, within GFF396at 385.662 kb on + strand, within GFF396at 385.667 kb on + strand, within GFF396at 385.672 kb on + strand, within GFF396at 385.692 kb on + strand, within GFF396at 385.700 kb on - strand, within GFF396at 385.713 kb on - strand, within GFF396at 385.724 kb on - strand, within GFF396at 385.734 kb on + strand, within GFF396at 385.760 kb on + strandat 385.760 kb on + strandat 385.768 kb on - strandat 385.768 kb on - strandat 385.776 kb on - strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.795 kb on + strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.802 kb on - strandat 385.845 kb on + strand, within GFF397at 385.851 kb on + strand, within GFF397at 385.851 kb on + strand, within GFF397at 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.982 kb on - strandat 387.984 kb on - strandat 388.017 kb on + strandat 388.712 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.756 kb on - strandat 388.756 kb on - strandat 388.756 kb on - strandat 388.779 kb on - strandat 388.784 kb on - strandat 388.785 kb on - strandat 388.802 kb on - strandat 388.820 kb on + strand, within GFF400at 388.860 kb on - strand, within GFF400at 388.921 kb on + strand, within GFF400at 388.921 kb on + strand, within GFF400at 388.929 kb on - strand, within GFF400at 388.956 kb on - strand, within GFF400

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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384,978 + GFF395 0.51 +0.2
384,978 + GFF395 0.51 -1.1
384,978 + GFF395 0.51 -0.7
384,986 - GFF395 0.52 -0.2
384,986 - GFF395 0.52 +0.5
384,986 - GFF395 0.52 -1.2
384,986 - GFF395 0.52 -1.4
385,008 - GFF395 0.56 +0.6
385,018 + GFF395 0.58 -0.6
385,100 + GFF395 0.72 +0.6
385,108 - GFF395 0.73 -0.4
385,153 - GFF395 0.81 +0.9
385,159 + GFF395 0.82 +0.9
385,160 + GFF395 0.82 -1.1
385,168 - GFF395 0.83 -1.5
385,192 + GFF395 0.87 -1.3
385,192 + GFF395 0.87 -1.1
385,192 + GFF395 0.87 -1.3
385,192 + GFF395 0.87 -1.8
385,199 + GFF395 0.88 -0.9
385,199 + GFF395 0.88 -1.1
385,199 + GFF395 0.88 -0.7
385,199 + GFF395 0.88 +0.9
385,199 + GFF395 0.88 +1.5
385,199 + GFF395 0.88 -0.6
385,199 + GFF395 0.88 +0.1
385,200 + GFF395 0.89 -1.5
385,200 - GFF395 0.89 -0.9
385,200 - GFF395 0.89 +0.9
385,200 - GFF395 0.89 +1.7
385,207 - GFF395 0.90 +1.0
385,207 - GFF395 0.90 +0.4
385,207 - GFF395 0.90 +0.0
385,207 - GFF395 0.90 -0.1
385,207 - GFF395 0.90 +0.3
385,220 + -1.9
385,220 + -0.4
385,220 + +0.5
385,228 - -0.5
385,228 - -0.6
385,235 + +0.4
385,240 + -0.9
385,249 - -1.9
385,251 + -1.2
385,261 + +0.3
385,262 + -1.2
385,269 - -1.3
385,269 - -0.8
385,281 + -1.2
385,299 - -1.2
385,299 - -1.2
385,400 - -1.4
385,400 - +1.1
385,406 - GFF396 0.10 +1.2
385,408 + GFF396 0.11 -0.5
385,432 + GFF396 0.16 +0.3
385,440 - GFF396 0.18 +0.1
385,440 - GFF396 0.18 -0.7
385,444 + GFF396 0.19 -1.6
385,497 + GFF396 0.31 +1.2
385,505 - GFF396 0.33 -0.2
385,505 - GFF396 0.33 -0.5
385,515 - GFF396 0.35 +0.2
385,531 + GFF396 0.39 +0.3
385,531 + GFF396 0.39 -1.2
385,534 - GFF396 0.39 +0.7
385,539 - GFF396 0.41 -0.4
385,539 - GFF396 0.41 -0.5
385,539 - GFF396 0.41 -1.3
385,539 - GFF396 0.41 -0.6
385,548 + GFF396 0.43 -0.6
385,557 + GFF396 0.45 -0.0
385,565 + GFF396 0.47 +0.8
385,570 + GFF396 0.48 +0.4
385,573 - GFF396 0.48 -0.3
385,611 + GFF396 0.57 +0.1
385,611 + GFF396 0.57 -0.1
385,611 + GFF396 0.57 +0.1
385,611 + GFF396 0.57 -1.3
385,611 + GFF396 0.57 -0.0
385,611 + GFF396 0.57 +0.9
385,611 + GFF396 0.57 +1.1
385,611 + GFF396 0.57 +1.0
385,614 - GFF396 0.58 -0.3
385,619 - GFF396 0.59 +0.3
385,619 - GFF396 0.59 -1.2
385,619 - GFF396 0.59 -0.2
385,619 - GFF396 0.59 -0.5
385,619 - GFF396 0.59 -1.6
385,619 - GFF396 0.59 +0.3
385,619 - GFF396 0.59 -1.0
385,619 - GFF396 0.59 +0.4
385,619 - GFF396 0.59 -1.5
385,619 - GFF396 0.59 -2.2
385,621 + GFF396 0.59 +0.5
385,621 + GFF396 0.59 -1.3
385,629 - GFF396 0.61 +0.1
385,633 - GFF396 0.62 -0.1
385,648 + GFF396 0.66 +0.6
385,648 + GFF396 0.66 +0.6
385,648 + GFF396 0.66 -0.9
385,648 + GFF396 0.66 -1.7
385,648 + GFF396 0.66 -1.1
385,648 + GFF396 0.66 -0.8
385,648 + GFF396 0.66 +0.3
385,648 + GFF396 0.66 +0.3
385,656 - GFF396 0.67 -0.7
385,656 - GFF396 0.67 +0.2
385,656 - GFF396 0.67 +0.3
385,656 - GFF396 0.67 -0.6
385,656 - GFF396 0.67 +1.1
385,656 - GFF396 0.67 -0.4
385,660 + GFF396 0.68 +1.3
385,662 + GFF396 0.69 -0.2
385,667 + GFF396 0.70 +0.4
385,672 + GFF396 0.71 +0.5
385,692 + GFF396 0.76 -0.7
385,700 - GFF396 0.77 -0.5
385,713 - GFF396 0.80 +1.2
385,724 - GFF396 0.83 +0.5
385,734 + GFF396 0.85 -0.7
385,760 + -0.3
385,760 + -1.2
385,768 - -1.2
385,768 - -0.2
385,776 - -0.5
385,787 + -0.7
385,787 + -1.0
385,787 + -0.7
385,787 + -0.6
385,795 + -0.1
385,795 - -1.0
385,795 - -0.3
385,795 - -0.9
385,795 - -0.1
385,795 - -0.5
385,802 - +0.1
385,845 + GFF397 0.37 -1.1
385,851 + GFF397 0.41 +0.3
385,851 + GFF397 0.41 -0.4
387,976 + -0.6
387,976 + -0.8
387,976 + -0.7
387,976 + +0.2
387,976 + -1.4
387,976 + -0.6
387,982 - -2.3
387,984 - +1.3
388,017 + -1.9
388,712 + -0.6
388,748 + +0.8
388,748 + -0.7
388,748 + +0.7
388,748 + -0.9
388,748 + +0.6
388,756 - +0.4
388,756 - -0.4
388,756 - +0.9
388,779 - +0.9
388,784 - -1.2
388,785 - +0.4
388,802 - -1.2
388,820 + GFF400 0.11 -1.4
388,860 - GFF400 0.14 -0.5
388,921 + GFF400 0.20 -0.0
388,921 + GFF400 0.20 +0.3
388,929 - GFF400 0.21 +1.0
388,956 - GFF400 0.23 -0.6

Or see this region's nucleotide sequence