Strain Fitness in Sphingobium sp. HT1-2 around GFF3918

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,954,809	+		GFF3916	0.32	-0.5
3,954,809	+		GFF3916	0.32	+0.2
3,954,809	+		GFF3916	0.32	-0.8
3,954,814	+		GFF3916	0.33	-0.9
3,954,816	+		GFF3916	0.33	-0.5
3,954,817	-		GFF3916	0.33	-1.5
3,954,818	+		GFF3916	0.33	-1.5
3,954,824	-		GFF3916	0.34	-0.1
3,954,824	-		GFF3916	0.34	-1.3
3,954,853	+		GFF3916	0.36	-0.5
3,954,853	+		GFF3916	0.36	-0.9
3,954,853	+		GFF3916	0.36	-0.1
3,954,853	+		GFF3916	0.36	+0.2
3,954,853	+		GFF3916	0.36	+0.4
3,954,853	+		GFF3916	0.36	-1.4
3,954,853	+		GFF3916	0.36	+1.0
3,954,853	+		GFF3916	0.36	+0.4
3,954,853	+		GFF3916	0.36	+0.3
3,954,853	+		GFF3916	0.36	-0.1
3,954,853	+		GFF3916	0.36	-0.8
3,954,853	+		GFF3916	0.36	-0.1
3,954,853	+		GFF3916	0.36	+1.0
3,954,853	+		GFF3916	0.36	-0.2
3,954,853	+		GFF3916	0.36	-0.4
3,954,853	+		GFF3916	0.36	-1.2
3,954,853	+		GFF3916	0.36	-2.0
3,954,853	+		GFF3916	0.36	+1.4
3,954,853	+		GFF3916	0.36	+0.3
3,954,853	+		GFF3916	0.36	-1.3
3,954,853	+		GFF3916	0.36	-1.6
3,954,853	+		GFF3916	0.36	+0.5
3,954,853	+		GFF3916	0.36	-0.3
3,954,853	+		GFF3916	0.36	-1.3
3,954,853	+		GFF3916	0.36	+0.4
3,954,853	+		GFF3916	0.36	-0.1
3,954,853	+		GFF3916	0.36	+0.5
3,954,853	+		GFF3916	0.36	-1.1
3,954,853	+		GFF3916	0.36	+0.8
3,954,853	+		GFF3916	0.36	-0.6
3,954,853	+		GFF3916	0.36	+0.3
3,954,861	-		GFF3916	0.37	+0.9
3,954,861	-		GFF3916	0.37	+0.1
3,954,861	-		GFF3916	0.37	+1.1
3,954,861	-		GFF3916	0.37	-0.7
3,954,861	-		GFF3916	0.37	-1.1
3,954,861	-		GFF3916	0.37	-0.3
3,954,861	-		GFF3916	0.37	+0.6
3,954,861	-		GFF3916	0.37	+1.1
3,954,861	-		GFF3916	0.37	-1.0
3,954,861	-		GFF3916	0.37	-0.6
3,954,861	-		GFF3916	0.37	+0.4
3,954,861	-		GFF3916	0.37	+0.5
3,954,861	-		GFF3916	0.37	+1.1
3,954,861	-		GFF3916	0.37	-0.3
3,954,861	-		GFF3916	0.37	+0.2
3,954,861	-		GFF3916	0.37	+1.2
3,954,861	-		GFF3916	0.37	+0.6
3,954,861	-		GFF3916	0.37	-0.9
3,954,861	-		GFF3916	0.37	-1.0
3,954,861	-		GFF3916	0.37	-0.8
3,954,861	-		GFF3916	0.37	-0.4
3,954,861	-		GFF3916	0.37	-0.6
3,954,861	-		GFF3916	0.37	+0.1
3,954,861	-		GFF3916	0.37	+0.7
3,954,861	-		GFF3916	0.37	-0.0
3,954,861	-		GFF3916	0.37	-0.3
3,954,861	-		GFF3916	0.37	-1.7
3,954,863	+		GFF3916	0.37	+0.3
3,954,863	+		GFF3916	0.37	-0.4
3,954,864	+		GFF3916	0.37	-0.5
3,954,871	-		GFF3916	0.38	+0.1
3,954,871	-		GFF3916	0.38	+1.0
3,954,888	+		GFF3916	0.40	-0.3
3,954,913	+		GFF3916	0.42	-0.5
3,954,913	+		GFF3916	0.42	+0.5
3,954,920	+		GFF3916	0.43	-0.2
3,954,920	+		GFF3916	0.43	-1.3
3,954,920	+		GFF3916	0.43	+0.1
3,954,920	+		GFF3916	0.43	-0.4
3,954,920	+		GFF3916	0.43	+0.3
3,954,920	+		GFF3916	0.43	+0.2
3,954,921	-		GFF3916	0.43	-0.6
3,954,928	-		GFF3916	0.44	-0.5
3,954,928	-		GFF3916	0.44	+0.6
3,954,928	-		GFF3916	0.44	-0.7
3,954,928	-		GFF3916	0.44	-0.6
3,954,928	-		GFF3916	0.44	+0.4
3,954,928	-		GFF3916	0.44	-0.1
3,954,928	-		GFF3916	0.44	-0.1
3,954,928	-		GFF3916	0.44	+1.7
3,954,928	-		GFF3916	0.44	-1.7
3,954,935	+		GFF3916	0.44	+0.5
3,954,946	+		GFF3916	0.46	-0.2
3,954,954	-		GFF3916	0.46	+0.6
3,954,983	+		GFF3916	0.49	+0.4
3,954,983	+		GFF3916	0.49	-1.5
3,954,983	+		GFF3916	0.49	-0.6
3,954,993	+		GFF3916	0.50	-1.1
3,954,993	+		GFF3916	0.50	+0.9
3,954,993	+		GFF3916	0.50	+1.7
3,954,993	+		GFF3916	0.50	+0.1
3,954,993	+		GFF3916	0.50	-0.9
3,954,993	+		GFF3916	0.50	-1.1
3,954,993	+		GFF3916	0.50	-1.5
3,955,000	-		GFF3916	0.51	-1.7
3,955,001	-		GFF3916	0.51	+1.4
3,955,001	-		GFF3916	0.51	-1.2
3,955,001	-		GFF3916	0.51	+0.5
3,955,001	-		GFF3916	0.51	-0.1
3,955,001	-		GFF3916	0.51	+0.0
3,955,001	-		GFF3916	0.51	+1.5
3,955,006	+		GFF3916	0.51	+0.4
3,955,006	+		GFF3916	0.51	+0.3
3,955,006	+		GFF3916	0.51	+0.4
3,955,006	+		GFF3916	0.51	+0.0
3,955,006	+		GFF3916	0.51	-0.9
3,955,006	+		GFF3916	0.51	-0.5
3,955,006	+		GFF3916	0.51	-0.8
3,955,006	+		GFF3916	0.51	+0.8
3,955,006	+		GFF3916	0.51	-1.7
3,955,006	+		GFF3916	0.51	+0.9
3,955,006	+		GFF3916	0.51	-0.1
3,955,006	+		GFF3916	0.51	-0.2
3,955,006	+		GFF3916	0.51	+0.5
3,955,006	+		GFF3916	0.51	-1.2
3,955,006	+		GFF3916	0.51	+0.2
3,955,006	+		GFF3916	0.51	+0.5
3,955,006	+		GFF3916	0.51	-1.1
3,955,006	+		GFF3916	0.51	+1.0
3,955,014	-		GFF3916	0.52	-1.1
3,955,014	-		GFF3916	0.52	-1.2
3,955,014	-		GFF3916	0.52	-0.1
3,955,014	-		GFF3916	0.52	-1.4
3,955,014	-		GFF3916	0.52	-1.6
3,955,014	-		GFF3916	0.52	+0.3
3,955,014	-		GFF3916	0.52	-0.8
3,955,014	-		GFF3916	0.52	+0.1
3,955,014	-		GFF3916	0.52	-2.9
3,955,014	-		GFF3916	0.52	+0.4
3,955,014	-		GFF3916	0.52	-0.5
3,955,014	-		GFF3916	0.52	-1.9
3,955,014	-		GFF3916	0.52	+1.0
3,955,014	-		GFF3916	0.52	-1.2
3,955,014	-		GFF3916	0.52	+1.6
3,955,014	-		GFF3916	0.52	+0.8
3,955,014	-		GFF3916	0.52	+0.5
3,955,014	-		GFF3916	0.52	+0.1
3,955,014	-		GFF3916	0.52	-0.3
3,955,014	-		GFF3916	0.52	-1.0
3,955,014	-		GFF3916	0.52	-0.6
3,955,014	-		GFF3916	0.52	-0.7
3,955,014	-		GFF3916	0.52	+1.8
3,955,014	-		GFF3916	0.52	-0.2
3,955,024	-		GFF3916	0.53	-0.3
3,955,041	-		GFF3916	0.55	-1.8
3,955,047	+		GFF3916	0.55	-0.3
3,955,047	+		GFF3916	0.55	+0.6
3,955,055	+		GFF3916	0.56	+0.4
3,955,060	+		GFF3916	0.57	+0.3
3,955,061	-		GFF3916	0.57	+0.0
3,955,064	+		GFF3916	0.57	-0.8
3,955,089	-		GFF3916	0.60	+0.9
3,955,101	+		GFF3916	0.61	-0.3
3,955,109	-		GFF3916	0.62	+0.8
3,955,113	+		GFF3916	0.62	+0.2
3,955,113	+		GFF3916	0.62	-0.6
3,955,121	-		GFF3916	0.63	+0.1
3,955,134	+		GFF3916	0.64	+0.8
3,955,135	+		GFF3916	0.64	-1.2
3,955,135	+		GFF3916	0.64	-0.5
3,955,135	+		GFF3916	0.64	+0.6
3,955,135	+		GFF3916	0.64	-1.2
3,955,143	-		GFF3916	0.65	-0.6
3,955,143	-		GFF3916	0.65	-0.9
3,955,143	-		GFF3916	0.65	+0.8
3,955,143	-		GFF3916	0.65	-0.4
3,955,143	-		GFF3916	0.65	+0.8
3,955,143	-		GFF3916	0.65	+0.3
3,955,148	-		GFF3916	0.65	+1.0
3,955,167	+		GFF3916	0.67	-1.7
3,955,183	+		GFF3916	0.69	-0.7
3,955,183	+		GFF3916	0.69	-0.2
3,955,183	+		GFF3916	0.69	-2.0
3,955,183	+		GFF3916	0.69	+0.8
3,955,183	+		GFF3916	0.69	-0.0
3,955,183	+		GFF3916	0.69	+0.4
3,955,183	+		GFF3916	0.69	-1.3
3,955,183	+		GFF3916	0.69	-0.4
3,955,183	+		GFF3916	0.69	+0.5
3,955,183	+		GFF3916	0.69	-0.1
3,955,183	+		GFF3916	0.69	+0.3
3,955,189	-		GFF3916	0.69	-1.3
3,955,191	-		GFF3916	0.70	-0.2
3,955,191	-		GFF3916	0.70	+0.7
3,955,191	-		GFF3916	0.70	-2.7
3,955,191	-		GFF3916	0.70	+0.4
3,955,191	-		GFF3916	0.70	+0.7
3,955,191	-		GFF3916	0.70	+0.8
3,955,191	-		GFF3916	0.70	+0.2
3,955,191	-		GFF3916	0.70	+0.2
3,955,191	-		GFF3916	0.70	+0.2
3,955,217	+		GFF3916	0.72	-0.3
3,955,217	+		GFF3916	0.72	+0.6
3,955,222	+		GFF3916	0.73	+0.7
3,955,222	+		GFF3916	0.73	+0.3
3,955,222	+		GFF3916	0.73	+0.5
3,955,222	+		GFF3916	0.73	-2.1
3,955,222	+		GFF3916	0.73	-0.6
3,955,222	+		GFF3916	0.73	-0.7
3,955,227	+		GFF3916	0.73	-2.9
3,955,227	+		GFF3916	0.73	+1.0
3,955,227	+		GFF3916	0.73	-0.3
3,955,230	-		GFF3916	0.73	-0.4
3,955,230	-		GFF3916	0.73	-0.1
3,955,230	-		GFF3916	0.73	+0.3
3,955,230	-		GFF3916	0.73	-1.1
3,955,230	-		GFF3916	0.73	+0.8
3,955,230	-		GFF3916	0.73	+1.8
3,955,230	-		GFF3916	0.73	-0.3
3,955,230	-		GFF3916	0.73	-0.1
3,955,230	-		GFF3916	0.73	-0.6
3,955,230	-		GFF3916	0.73	-0.1
3,955,235	-		GFF3916	0.74	-0.3
3,955,235	-		GFF3916	0.74	+0.8
3,955,272	+		GFF3916	0.78	-0.5
3,955,284	+		GFF3916	0.79	-1.0
3,955,287	+		GFF3916	0.79	-0.5
3,955,287	-		GFF3916	0.79	-1.5
3,955,287	-		GFF3916	0.79	-0.6
3,955,289	+		GFF3916	0.79	-0.2
3,955,297	-		GFF3916	0.80	-0.2
3,955,341	+		GFF3916	0.84	-1.2
3,955,341	+		GFF3916	0.84	-0.4
3,955,341	+		GFF3916	0.84	-0.3
3,955,341	+		GFF3916	0.84	-0.3
3,955,349	-		GFF3916	0.85	-0.0
3,955,372	+		GFF3916	0.87	+0.4
3,955,372	+		GFF3916	0.87	+0.4
3,955,382	+		GFF3916	0.88	+0.2
3,955,390	+		GFF3916	0.89	+0.5
3,955,390	+		GFF3916	0.89	-1.0
3,955,404	-				-1.1
3,955,413	+				+0.2
3,955,413	+				-1.6
3,955,426	-				-1.2
3,955,426	-				-1.0
3,955,435	-				+0.5
3,955,441	+				-0.1
3,955,441	+				-0.9
3,955,443	-				-0.9
3,955,449	-				-0.0
3,955,449	-				-0.8
3,955,454	+				-1.6
3,955,454	+				-0.3
3,955,457	-				+1.3
3,955,457	-				-1.8
3,955,459	+				+0.1
3,955,459	+				-0.6
3,955,459	+				+1.4
3,955,459	+				-0.7
3,955,459	+				-2.3
3,955,459	+				-0.6
3,955,459	+				-0.6
3,955,459	+				-0.8
3,955,459	+				+0.4
3,955,464	+				-1.3
3,955,467	-				-2.2
3,955,467	-				-1.3
3,955,467	-				+1.0
3,955,467	-				+0.5
3,955,467	-				-1.1
3,955,467	-				+0.7
3,955,467	-				+0.2
3,955,467	-				-1.0
3,955,467	-				-0.6
3,955,467	-				-1.6
3,955,467	-				-0.6
3,955,467	-				+0.9
3,955,467	-				+1.3
3,955,467	-				+0.4
3,955,467	-				-1.1
3,955,467	-				+0.3
3,955,469	+				+1.2
3,955,495	+				-1.1
3,955,509	+				+0.3
3,955,509	+				-1.1
3,955,517	-				-0.0
3,955,517	-				-0.9
3,955,517	-				-0.6
3,955,532	-				-0.2
3,955,532	-				-0.5
3,955,534	+				+1.1
3,955,534	+				+0.7
3,955,534	+				+1.6
3,955,534	+				-0.2
3,955,534	+				+0.9
3,955,534	+				+1.1
3,955,534	+				+1.5
3,955,534	+				-1.1
3,955,534	+				+0.5
3,955,534	+				+0.2
3,955,534	+				-1.1
3,955,534	+				-0.0
3,955,534	+				+0.1
3,955,540	-				-1.1
3,955,542	-				+1.3
3,955,542	-				-1.2
3,955,542	-				+0.5
3,955,542	-				-1.1
3,955,542	-				-0.8
3,955,542	-				+0.5
3,955,542	-				-2.0
3,955,542	-				+0.4
3,955,542	-				+0.2
3,955,549	+		GFF3917	0.14	-0.0
3,955,552	-		GFF3917	0.16	-1.3
3,955,558	+		GFF3917	0.20	-0.9
3,955,568	+		GFF3917	0.26	-0.8
3,955,568	+		GFF3917	0.26	-1.9
3,955,570	+		GFF3917	0.27	+0.2
3,955,574	-		GFF3917	0.30	-3.0
3,955,576	-		GFF3917	0.31	-1.0
3,955,576	-		GFF3917	0.31	-0.5
3,955,580	+		GFF3917	0.33	-0.6
3,955,603	-		GFF3917	0.48	-1.3
3,955,643	+		GFF3917	0.72	+1.2
3,955,643	+		GFF3917	0.72	+0.5
3,955,646	-		GFF3917	0.74	-1.7
3,955,651	-		GFF3917	0.77	+0.8
3,955,695	-				-0.6
3,955,706	+				-0.4
3,955,712	+				-0.1
3,955,714	-				-1.3
3,955,722	+				-1.5
3,955,724	+				-0.8
3,955,730	-				-1.5
3,955,730	-				+1.1
3,955,730	-				-0.6
3,955,760	+				-1.1
3,955,816	+				+1.1
3,955,836	+				+0.2
3,955,879	+		GFF3918	0.12	+0.5
3,955,879	-		GFF3918	0.12	-0.3
3,955,891	+		GFF3918	0.14	-0.1
3,955,896	+		GFF3918	0.15	+0.9
3,955,911	-		GFF3918	0.17	-0.2
3,955,969	+		GFF3918	0.26	+0.1
3,955,983	-		GFF3918	0.28	-0.7
3,955,984	-		GFF3918	0.29	-0.3
3,955,991	+		GFF3918	0.30	-0.7
3,955,991	+		GFF3918	0.30	+0.4
3,955,991	+		GFF3918	0.30	-2.0
3,955,991	-		GFF3918	0.30	+1.7
3,955,999	-		GFF3918	0.31	+0.4
3,956,016	+		GFF3918	0.34	-1.0
3,956,016	+		GFF3918	0.34	+0.2
3,956,016	+		GFF3918	0.34	+0.2
3,956,026	-		GFF3918	0.35	+0.2
3,956,031	+		GFF3918	0.36	-0.2
3,956,044	-		GFF3918	0.38	+0.2
3,956,049	+		GFF3918	0.39	-1.2
3,956,049	-		GFF3918	0.39	-0.0
3,956,057	-		GFF3918	0.40	-2.1
3,956,057	-		GFF3918	0.40	+0.6
3,956,057	-		GFF3918	0.40	+0.0
3,956,080	+		GFF3918	0.44	+0.3
3,956,080	+		GFF3918	0.44	-0.2
3,956,080	+		GFF3918	0.44	+0.3
3,956,080	+		GFF3918	0.44	+0.5
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3,956,088	-		GFF3918	0.45	-1.6
3,956,088	-		GFF3918	0.45	+0.1
3,956,088	-		GFF3918	0.45	-1.7
3,956,088	-		GFF3918	0.45	-0.4
3,956,106	+		GFF3918	0.48	-0.8
3,956,107	+		GFF3918	0.48	+0.4
3,956,112	+		GFF3918	0.49	-1.0
3,956,112	+		GFF3918	0.49	-1.6
3,956,112	+		GFF3918	0.49	-0.2
3,956,112	+		GFF3918	0.49	-0.3
3,956,112	+		GFF3918	0.49	-2.0
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3,956,120	-		GFF3918	0.50	-1.3
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3,956,156	+		GFF3918	0.56	+1.2
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3,956,164	-		GFF3918	0.57	+0.7
3,956,164	-		GFF3918	0.57	+0.7
3,956,164	-		GFF3918	0.57	-0.7
3,956,230	+		GFF3918	0.67	+0.5
3,956,235	+		GFF3918	0.68	-0.1
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3,956,238	-		GFF3918	0.69	-0.6
3,956,240	+		GFF3918	0.69	+0.2
3,956,240	+		GFF3918	0.69	+0.3
3,956,240	+		GFF3918	0.69	+0.1
3,956,240	+		GFF3918	0.69	-0.8
3,956,240	+		GFF3918	0.69	-1.9
3,956,240	+		GFF3918	0.69	+0.1
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3,956,248	-		GFF3918	0.70	-0.3
3,956,248	-		GFF3918	0.70	+0.4
3,956,248	-		GFF3918	0.70	+0.2
3,956,250	+		GFF3918	0.70	-1.1
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3,956,274	+		GFF3918	0.74	-1.1
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3,956,284	+		GFF3918	0.76	+1.1
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3,956,292	-		GFF3918	0.77	-2.1
3,956,292	-		GFF3918	0.77	-1.5
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3,956,295	+		GFF3918	0.78	-1.0
3,956,295	+		GFF3918	0.78	+1.4
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3,956,300	+		GFF3918	0.78	-0.3
3,956,300	+		GFF3918	0.78	-0.1
3,956,300	+		GFF3918	0.78	+0.2
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3,956,303	-		GFF3918	0.79	-1.6
3,956,308	-		GFF3918	0.80	-1.1
3,956,308	-		GFF3918	0.80	+0.6
3,956,309	+		GFF3918	0.80	-0.7
3,956,309	+		GFF3918	0.80	-1.0
3,956,309	+		GFF3918	0.80	+0.6
3,956,309	+		GFF3918	0.80	-2.5
3,956,309	+		GFF3918	0.80	-0.2
3,956,309	+		GFF3918	0.80	+0.3
3,956,309	+		GFF3918	0.80	-0.7
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3,956,317	-		GFF3918	0.81	-0.0
3,956,317	-		GFF3918	0.81	-0.9
3,956,317	-		GFF3918	0.81	+1.3
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3,956,330	-		GFF3918	0.83	-0.7
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3,956,367	+		GFF3918	0.89	-1.2
3,956,371	+		GFF3918	0.89	+1.2
3,956,389	+				-0.3
3,956,389	+				+1.2
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3,956,399	+				-0.0
3,956,404	+				-1.6
3,956,404	+				-1.6
3,956,404	+				-1.5
3,956,404	+				-1.5
3,956,412	-				+1.1
3,956,414	-				-0.7
3,956,424	-				+1.5
3,956,424	-				+0.4
3,956,431	+				+0.7
3,956,431	+				+0.3
3,956,431	+				-0.5
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3,956,439	-				+0.4
3,956,441	+				+0.8
3,956,447	+				-0.2
3,956,447	+				-1.0
3,956,448	-				+1.6
3,956,457	+				-0.7
3,956,473	-				-1.2
3,956,473	-				+0.5
3,956,473	-				+0.1
3,956,473	-				-0.5
3,956,473	-				-0.7
3,956,484	+				-0.8
3,956,533	-		GFF3919	0.10	-0.7
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3,956,732	+		GFF3919	0.31	+0.9
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3,956,891	+		GFF3919	0.48	+0.1
3,956,891	+		GFF3919	0.48	+0.6
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3,956,896	+		GFF3919	0.49	+0.5
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3,956,958	+		GFF3919	0.55	-1.0
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3,956,975	-		GFF3919	0.57	+0.8
3,957,011	+		GFF3919	0.61	+0.2
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3,957,051	+		GFF3919	0.65	-1.2
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3,957,069	+		GFF3919	0.67	-2.2
3,957,069	+		GFF3919	0.67	-1.2
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3,957,116	+		GFF3919	0.72	-0.3
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3,957,288	+		GFF3919	0.90	-0.1
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3,957,316	-				+0.9
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3,957,329	+				+2.1
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3,957,360	+				-2.3
3,957,375	-				+0.1
3,957,378	+				-2.6
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3,957,386	-				-1.5
3,957,386	-				-0.0
3,957,386	-				+0.3
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3,957,430	+				-0.5
3,957,430	+				-0.9
3,957,430	+				+0.2
3,957,430	+				-0.1
3,957,430	+				-0.2
3,957,430	+				+0.5
3,957,430	+				-0.8