Strain Fitness in Sphingobium sp. HT1-2 around GFF3828

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,867,856	+				-0.3
3,867,856	+				-0.3
3,867,856	+				-0.5
3,867,864	-				-0.2
3,867,875	+				-1.6
3,867,876	-				-0.6
3,867,877	+				+1.6
3,867,893	-				-0.4
3,867,894	+				-2.0
3,867,894	-				-0.7
3,867,936	+				-0.1
3,867,944	-				-1.6
3,867,957	+				+0.8
3,867,965	-				+0.8
3,867,967	+				-0.3
3,867,967	+				-0.2
3,867,978	-				-0.7
3,867,995	+				+1.7
3,867,995	+				-0.2
3,868,001	+				-1.3
3,868,014	-				+0.5
3,868,017	-				+0.2
3,868,034	-				-0.6
3,868,034	-				-2.0
3,868,034	-				+0.0
3,868,034	-				+0.5
3,868,054	+				-0.2
3,868,054	+				-0.5
3,868,064	-				+0.2
3,868,082	+				-0.2
3,868,088	-				+1.8
3,868,113	+				+1.3
3,868,113	+				-0.3
3,868,113	+				-1.3
3,868,113	+				-0.5
3,868,113	+				-0.1
3,868,117	+				-0.8
3,868,118	+				-0.3
3,868,121	-				+0.5
3,868,121	-				+0.1
3,868,121	-				+0.4
3,868,121	-				+0.2
3,868,121	-				+0.8
3,868,121	-				-0.6
3,868,121	-				-0.8
3,868,121	-				+0.8
3,868,136	-				-1.8
3,868,141	-				+0.9
3,868,143	+				+0.2
3,868,143	+				-0.6
3,868,143	-				-0.2
3,868,151	-				-1.2
3,868,151	-				-0.2
3,868,170	+				+0.7
3,868,170	+				-0.8
3,868,176	+				-0.4
3,868,176	+				+0.3
3,868,176	+				+0.3
3,868,176	+				-0.5
3,868,176	+				+0.5
3,868,178	-				-0.4
3,868,184	-				-1.2
3,868,184	-				+0.4
3,868,184	-				-1.2
3,868,184	-				+2.1
3,868,184	-				+0.3
3,868,191	+				+0.0
3,868,199	-				-0.1
3,868,201	+				-1.5
3,868,201	+				-1.1
3,868,209	-				-0.6
3,868,234	+				-0.6
3,868,239	+				+1.7
3,868,242	-				+0.7
3,868,242	-				-1.1
3,868,281	+				-0.5
3,868,286	+				-0.0
3,868,286	+				-1.3
3,868,286	+				+0.4
3,868,286	+				-0.4
3,868,289	-				-1.6
3,868,289	-				-2.3
3,868,291	+		GFF3828	0.10	+0.2
3,868,291	+		GFF3828	0.10	+0.1
3,868,294	-		GFF3828	0.10	-0.8
3,868,294	-		GFF3828	0.10	+0.5
3,868,294	-		GFF3828	0.10	-0.6
3,868,305	+		GFF3828	0.11	+0.3
3,868,306	+		GFF3828	0.11	+0.3
3,868,317	+		GFF3828	0.11	-0.9
3,868,319	-		GFF3828	0.12	+0.7
3,868,322	+		GFF3828	0.12	+0.4
3,868,327	+		GFF3828	0.12	+0.5
3,868,327	+		GFF3828	0.12	-1.2
3,868,330	-		GFF3828	0.12	-1.5
3,868,330	-		GFF3828	0.12	-2.6
3,868,331	-		GFF3828	0.12	+0.9
3,868,335	-		GFF3828	0.12	-0.8
3,868,339	+		GFF3828	0.13	-0.3
3,868,340	-		GFF3828	0.13	+1.5
3,868,340	-		GFF3828	0.13	-1.0
3,868,364	+		GFF3828	0.14	-0.5
3,868,364	+		GFF3828	0.14	+0.5
3,868,364	+		GFF3828	0.14	+0.2
3,868,364	+		GFF3828	0.14	+0.2
3,868,372	-		GFF3828	0.14	+1.5
3,868,372	-		GFF3828	0.14	-0.4
3,868,372	-		GFF3828	0.14	-0.3
3,868,386	+		GFF3828	0.15	+1.8
3,868,386	+		GFF3828	0.15	+0.6
3,868,394	-		GFF3828	0.16	+1.1
3,868,404	-		GFF3828	0.16	-0.2
3,868,418	-		GFF3828	0.17	-0.2
3,868,447	+		GFF3828	0.19	+0.9
3,868,447	+		GFF3828	0.19	+0.8
3,868,455	-		GFF3828	0.19	-0.4
3,868,455	-		GFF3828	0.19	+0.5
3,868,458	-		GFF3828	0.19	-1.1
3,868,460	-		GFF3828	0.19	+1.1
3,868,500	+		GFF3828	0.21	+0.1
3,868,505	-		GFF3828	0.22	-0.4
3,868,510	+		GFF3828	0.22	+1.5
3,868,510	+		GFF3828	0.22	+0.6
3,868,510	+		GFF3828	0.22	-1.1
3,868,515	-		GFF3828	0.22	-2.3
3,868,524	+		GFF3828	0.23	-1.6
3,868,530	-		GFF3828	0.23	+1.0
3,868,531	+		GFF3828	0.23	-0.6
3,868,554	+		GFF3828	0.24	-1.0
3,868,558	-		GFF3828	0.25	-0.5
3,868,558	-		GFF3828	0.25	+1.4
3,868,568	-		GFF3828	0.25	-1.1
3,868,568	-		GFF3828	0.25	-0.5
3,868,570	+		GFF3828	0.25	+0.4
3,868,570	+		GFF3828	0.25	-0.8
3,868,573	-		GFF3828	0.25	-0.2
3,868,576	+		GFF3828	0.26	-1.5
3,868,584	-		GFF3828	0.26	-0.2
3,868,597	+		GFF3828	0.27	-2.5
3,868,605	-		GFF3828	0.27	+1.2
3,868,616	+		GFF3828	0.28	-1.0
3,868,621	+		GFF3828	0.28	+0.5
3,868,621	+		GFF3828	0.28	-0.5
3,868,623	+		GFF3828	0.28	-0.9
3,868,629	-		GFF3828	0.28	-0.9
3,868,632	+		GFF3828	0.29	-1.8
3,868,639	+		GFF3828	0.29	+0.7
3,868,703	+		GFF3828	0.33	+0.5
3,868,703	+		GFF3828	0.33	-0.7
3,868,711	-		GFF3828	0.33	+0.8
3,868,730	+		GFF3828	0.34	-1.3
3,868,731	+		GFF3828	0.34	-0.5
3,868,746	+		GFF3828	0.35	+1.3
3,868,754	-		GFF3828	0.35	-0.2
3,868,758	+		GFF3828	0.36	-0.6
3,868,774	+		GFF3828	0.36	+0.3
3,868,795	+		GFF3828	0.38	-0.4
3,868,805	+		GFF3828	0.38	-1.5
3,868,811	+		GFF3828	0.38	-0.6
3,868,814	-		GFF3828	0.39	+1.1
3,868,814	-		GFF3828	0.39	+0.4
3,868,819	-		GFF3828	0.39	-0.5
3,868,819	-		GFF3828	0.39	-0.5
3,868,819	-		GFF3828	0.39	+0.6
3,868,843	+		GFF3828	0.40	+0.2
3,868,854	-		GFF3828	0.41	-0.2
3,868,856	-		GFF3828	0.41	+0.8
3,868,864	+		GFF3828	0.41	+0.3
3,868,872	+		GFF3828	0.42	+0.2
3,868,880	-		GFF3828	0.42	-0.6
3,868,888	+		GFF3828	0.43	-1.7
3,868,898	+		GFF3828	0.43	-0.4
3,868,905	+		GFF3828	0.44	-1.1
3,868,907	-		GFF3828	0.44	-0.2
3,868,932	+		GFF3828	0.45	-0.5
3,868,936	+		GFF3828	0.45	-0.6
3,868,938	-		GFF3828	0.45	-2.2
3,868,944	-		GFF3828	0.46	+0.5
3,868,948	-		GFF3828	0.46	-0.1
3,868,949	-		GFF3828	0.46	-1.6
3,868,953	-		GFF3828	0.46	-1.2
3,868,954	-		GFF3828	0.46	+0.1
3,868,970	-		GFF3828	0.47	-0.6
3,868,973	+		GFF3828	0.47	+0.0
3,868,981	-		GFF3828	0.48	-0.0
3,868,983	+		GFF3828	0.48	+1.7
3,868,992	+		GFF3828	0.48	-2.0
3,868,992	+		GFF3828	0.48	-2.3
3,868,992	+		GFF3828	0.48	-0.1
3,868,992	+		GFF3828	0.48	-1.2
3,868,992	+		GFF3828	0.48	-0.1
3,868,992	+		GFF3828	0.48	-0.2
3,868,992	+		GFF3828	0.48	+1.1
3,868,992	+		GFF3828	0.48	-2.0
3,868,992	+		GFF3828	0.48	-0.6
3,868,992	+		GFF3828	0.48	-0.4
3,868,992	+		GFF3828	0.48	+0.6
3,868,992	+		GFF3828	0.48	-0.6
3,868,992	+		GFF3828	0.48	-0.1
3,868,992	+		GFF3828	0.48	+0.1
3,868,992	+		GFF3828	0.48	-0.0
3,868,992	+		GFF3828	0.48	-0.7
3,868,992	+		GFF3828	0.48	-0.3
3,868,992	+		GFF3828	0.48	-1.3
3,868,992	+		GFF3828	0.48	-1.7
3,868,992	+		GFF3828	0.48	-1.1
3,868,992	+		GFF3828	0.48	+0.5
3,868,992	+		GFF3828	0.48	+0.3
3,868,992	+		GFF3828	0.48	-0.3
3,869,000	-		GFF3828	0.49	-0.5
3,869,000	-		GFF3828	0.49	-0.3
3,869,000	-		GFF3828	0.49	+0.1
3,869,000	-		GFF3828	0.49	+0.5
3,869,000	-		GFF3828	0.49	-0.6
3,869,000	-		GFF3828	0.49	+0.2
3,869,000	-		GFF3828	0.49	-0.1
3,869,000	-		GFF3828	0.49	+0.8
3,869,000	-		GFF3828	0.49	-1.0
3,869,000	-		GFF3828	0.49	+0.3
3,869,000	-		GFF3828	0.49	-1.3
3,869,000	-		GFF3828	0.49	-1.6
3,869,000	-		GFF3828	0.49	-1.3
3,869,002	+		GFF3828	0.49	-0.5
3,869,002	+		GFF3828	0.49	+0.9
3,869,002	+		GFF3828	0.49	-0.9
3,869,002	+		GFF3828	0.49	-1.6
3,869,004	+		GFF3828	0.49	-0.1
3,869,010	-		GFF3828	0.49	+0.1
3,869,010	-		GFF3828	0.49	+0.3
3,869,010	-		GFF3828	0.49	-0.2
3,869,010	-		GFF3828	0.49	-1.1
3,869,010	-		GFF3828	0.49	+0.8
3,869,031	-		GFF3828	0.50	+0.1
3,869,035	+		GFF3828	0.51	+0.4
3,869,046	-		GFF3828	0.51	-2.1
3,869,049	+		GFF3828	0.51	-0.6
3,869,052	-		GFF3828	0.52	+0.7
3,869,057	-		GFF3828	0.52	-1.6
3,869,062	-		GFF3828	0.52	+0.7
3,869,077	-		GFF3828	0.53	-1.3
3,869,079	+		GFF3828	0.53	-2.5
3,869,118	-		GFF3828	0.55	-0.5
3,869,133	-		GFF3828	0.56	-0.5
3,869,141	+		GFF3828	0.56	-0.6
3,869,165	+		GFF3828	0.58	-1.0
3,869,165	+		GFF3828	0.58	-2.5
3,869,227	-		GFF3828	0.61	-1.6
3,869,250	-		GFF3828	0.62	+0.4
3,869,252	-		GFF3828	0.62	+1.0
3,869,261	-		GFF3828	0.63	+0.2
3,869,279	+		GFF3828	0.64	-1.3
3,869,282	-		GFF3828	0.64	+0.0
3,869,284	+		GFF3828	0.64	-2.2
3,869,287	-		GFF3828	0.64	-0.7
3,869,287	-		GFF3828	0.64	+0.0
3,869,287	-		GFF3828	0.64	+0.1
3,869,287	-		GFF3828	0.64	-1.2
3,869,287	-		GFF3828	0.64	-0.1
3,869,287	-		GFF3828	0.64	+0.5
3,869,289	+		GFF3828	0.64	+0.4
3,869,289	+		GFF3828	0.64	+0.4
3,869,289	+		GFF3828	0.64	+0.2
3,869,289	+		GFF3828	0.64	-0.9
3,869,289	+		GFF3828	0.64	-1.1
3,869,289	+		GFF3828	0.64	+0.2
3,869,289	+		GFF3828	0.64	-0.3
3,869,289	+		GFF3828	0.64	-2.1
3,869,289	+		GFF3828	0.64	-0.6
3,869,295	+		GFF3828	0.65	-1.6
3,869,297	-		GFF3828	0.65	-0.1
3,869,297	-		GFF3828	0.65	-1.1
3,869,297	-		GFF3828	0.65	-1.6
3,869,297	-		GFF3828	0.65	+0.1
3,869,297	-		GFF3828	0.65	+0.3
3,869,297	-		GFF3828	0.65	+0.2
3,869,299	+		GFF3828	0.65	-0.1
3,869,305	+		GFF3828	0.65	+0.7
3,869,349	+		GFF3828	0.68	-0.2
3,869,370	+		GFF3828	0.69	+0.9
3,869,386	-		GFF3828	0.70	-2.2
3,869,403	-		GFF3828	0.71	-0.1
3,869,412	+		GFF3828	0.71	+0.6
3,869,434	+		GFF3828	0.72	+0.4
3,869,442	-		GFF3828	0.73	-0.7
3,869,452	-		GFF3828	0.73	-1.6
3,869,457	-		GFF3828	0.74	-0.0
3,869,487	+		GFF3828	0.75	-0.5
3,869,502	+		GFF3828	0.76	-3.1
3,869,504	+		GFF3828	0.76	-0.3
3,869,504	+		GFF3828	0.76	+0.4
3,869,505	-		GFF3828	0.76	-0.6
3,869,513	-		GFF3828	0.77	-0.8
3,869,521	+		GFF3828	0.77	-0.8
3,869,527	+		GFF3828	0.77	+0.0
3,869,561	+		GFF3828	0.79	+0.0
3,869,569	-		GFF3828	0.80	+1.1
3,869,569	-		GFF3828	0.80	-0.4
3,869,569	-		GFF3828	0.80	-1.1
3,869,575	-		GFF3828	0.80	-0.9
3,869,577	+		GFF3828	0.80	-1.5
3,869,587	+		GFF3828	0.81	-1.7
3,869,587	+		GFF3828	0.81	+1.1
3,869,590	-		GFF3828	0.81	-0.1
3,869,590	-		GFF3828	0.81	-1.6
3,869,595	-		GFF3828	0.81	+0.1
3,869,595	-		GFF3828	0.81	-0.5
3,869,606	+		GFF3828	0.82	-1.2
3,869,606	-		GFF3828	0.82	-0.0
3,869,609	+		GFF3828	0.82	+0.7
3,869,615	-		GFF3828	0.82	+0.9
3,869,616	-		GFF3828	0.82	-1.3
3,869,670	-		GFF3828	0.85	+1.6
3,869,717	+		GFF3828	0.88	-0.4
3,869,717	+		GFF3828	0.88	-1.8
3,869,772	-				+0.4
3,869,772	-				-0.2
3,869,772	-				+0.2
3,869,812	-				-1.0
3,869,819	+				+0.8
3,869,827	+				+0.1
3,869,830	-				-0.1
3,869,835	-				+0.9
3,869,835	-				-1.7
3,869,840	+				-1.3
3,869,848	-				-0.1
3,869,850	+				+0.9
3,869,850	+				+1.1
3,869,850	+				+0.7
3,869,858	-				-1.2
3,869,858	-				+0.1
3,869,860	+				-1.1
3,869,860	+				-0.3
3,869,868	-				+1.4
3,869,868	-				-0.1
3,869,875	-				+0.9
3,869,896	+				-0.6
3,869,899	-				-0.8
3,869,899	-				-1.6
3,870,007	+				-0.5
3,870,047	+				-1.9
3,870,104	-				-0.1
3,870,125	+				-0.8
3,870,125	+				+0.9
3,870,125	+				-0.6
3,870,133	-		GFF3829	0.11	-0.2
3,870,133	-		GFF3829	0.11	-0.1
3,870,133	-		GFF3829	0.11	-0.5
3,870,149	+		GFF3829	0.14	+0.4
3,870,154	+		GFF3829	0.15	-0.5
3,870,157	-		GFF3829	0.16	-0.1
3,870,162	-		GFF3829	0.17	-2.3
3,870,166	+		GFF3829	0.17	+0.7
3,870,174	-		GFF3829	0.19	+0.0
3,870,181	-		GFF3829	0.20	+1.3
3,870,199	+		GFF3829	0.24	-1.4
3,870,200	-		GFF3829	0.24	+1.0
3,870,204	+		GFF3829	0.25	-0.6
3,870,205	-		GFF3829	0.25	-0.4
3,870,207	+		GFF3829	0.26	-1.5
3,870,207	-		GFF3829	0.26	+0.5
3,870,207	-		GFF3829	0.26	+0.2
3,870,207	-		GFF3829	0.26	-2.0
3,870,212	-		GFF3829	0.27	-0.9
3,870,212	-		GFF3829	0.27	-0.5
3,870,222	+		GFF3829	0.29	-2.1
3,870,237	-		GFF3829	0.32	+0.2
3,870,265	+		GFF3829	0.37	-1.0
3,870,265	+		GFF3829	0.37	+0.2
3,870,273	-		GFF3829	0.39	-2.0
3,870,273	-		GFF3829	0.39	+0.2
3,870,273	-		GFF3829	0.39	+1.8
3,870,288	+		GFF3829	0.42	+1.2
3,870,288	+		GFF3829	0.42	-2.3
3,870,288	+		GFF3829	0.42	-2.3
3,870,288	+		GFF3829	0.42	+0.9
3,870,293	+		GFF3829	0.43	+0.7
3,870,303	+		GFF3829	0.45	-1.5
3,870,303	+		GFF3829	0.45	-0.2
3,870,311	-		GFF3829	0.47	-0.7
3,870,316	-		GFF3829	0.48	+0.8
3,870,316	-		GFF3829	0.48	+2.2
3,870,328	-		GFF3829	0.50	-1.0
3,870,338	+		GFF3829	0.52	-1.2
3,870,346	-		GFF3829	0.54	+0.4
3,870,350	+		GFF3829	0.55	-1.2
3,870,351	-		GFF3829	0.55	-0.5
3,870,357	+		GFF3829	0.56	+1.0
3,870,362	+		GFF3829	0.57	-0.2
3,870,362	+		GFF3829	0.57	+0.2
3,870,362	+		GFF3829	0.57	-0.6
3,870,362	+		GFF3829	0.57	+0.8
3,870,362	+		GFF3829	0.57	-0.2
3,870,365	-		GFF3829	0.58	+0.7
3,870,370	-		GFF3829	0.59	-0.5
3,870,370	-		GFF3829	0.59	+0.6
3,870,370	-		GFF3829	0.59	-0.9
3,870,370	-		GFF3829	0.59	-1.6
3,870,421	+		GFF3829	0.69	-0.5
3,870,429	+		GFF3829	0.71	-0.2
3,870,437	+		GFF3829	0.72	-0.5
3,870,447	+		GFF3829	0.74	-2.5
3,870,477	-		GFF3829	0.80	-0.9
3,870,507	+		GFF3829	0.86	+0.3
3,870,522	+		GFF3829	0.89	-0.0
3,870,530	-				-0.6
3,870,532	+				-0.2
3,870,538	+				+0.1
3,870,540	-				-1.0
3,870,543	+				-0.5
3,870,551	-				-0.3
3,870,551	-				+1.2
3,870,559	+				+0.0
3,870,559	+				+0.1
3,870,561	-				+0.7
3,870,567	-				+1.1
3,870,568	-				+0.0
3,870,602	+				-1.1
3,870,602	+				-1.0
3,870,602	+				+0.7
3,870,602	+				+0.5
3,870,602	+				-0.2
3,870,602	+				-0.4
3,870,602	+				-0.6
3,870,602	+				+0.4
3,870,602	+				-1.6
3,870,602	+				-1.2
3,870,602	+				-1.2
3,870,602	+				-1.3
3,870,602	+				+1.2
3,870,602	+				-1.2
3,870,602	+				+0.2
3,870,602	+				+0.2
3,870,602	+				-0.1
3,870,602	+				-2.3
3,870,602	+				-0.2
3,870,602	+				-0.5
3,870,602	+				-0.7
3,870,602	+				-1.2
3,870,602	+				-1.1
3,870,602	+				-0.3
3,870,602	+				-0.0
3,870,602	+				+0.1
3,870,610	-		GFF3830	0.11	+1.5
3,870,610	-		GFF3830	0.11	+0.7
3,870,610	-		GFF3830	0.11	+0.3
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	-0.6
3,870,610	-		GFF3830	0.11	-0.7
3,870,610	-		GFF3830	0.11	+0.1
3,870,610	-		GFF3830	0.11	+0.8
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	-0.5
3,870,610	-		GFF3830	0.11	-1.8
3,870,610	-		GFF3830	0.11	+0.7
3,870,610	-		GFF3830	0.11	-1.9
3,870,610	-		GFF3830	0.11	-1.7
3,870,610	-		GFF3830	0.11	-1.1
3,870,610	-		GFF3830	0.11	-0.8
3,870,610	-		GFF3830	0.11	-1.8
3,870,610	-		GFF3830	0.11	-0.7
3,870,610	-		GFF3830	0.11	-2.0
3,870,610	-		GFF3830	0.11	-0.1
3,870,610	-		GFF3830	0.11	+0.3
3,870,610	-		GFF3830	0.11	-2.1
3,870,610	-		GFF3830	0.11	-0.5
3,870,610	-		GFF3830	0.11	-1.1
3,870,624	-		GFF3830	0.15	-0.5
3,870,734	+		GFF3830	0.47	-0.5
3,870,744	+		GFF3830	0.50	-0.3
3,870,744	+		GFF3830	0.50	-1.3
3,870,744	+		GFF3830	0.50	+0.4
3,870,744	+		GFF3830	0.50	-0.0
3,870,744	+		GFF3830	0.50	+0.8
3,870,752	-		GFF3830	0.52	-0.7
3,870,752	-		GFF3830	0.52	-0.4
3,870,831	-		GFF3830	0.75	-2.2
3,870,842	+		GFF3830	0.78	-1.1
3,870,849	+		GFF3830	0.80	-2.0
3,870,849	+		GFF3830	0.80	-0.5
3,870,850	-		GFF3830	0.80	-2.0
3,870,857	-		GFF3830	0.82	-1.7
3,870,865	+		GFF3830	0.84	-0.2
3,870,873	-		GFF3830	0.87	-0.5
3,870,875	+		GFF3830	0.87	-0.1
3,870,906	-				-0.5
3,870,919	-				-0.2
3,870,926	-				-1.3
3,870,941	+				+0.4