Strain Fitness in Sphingobium sp. HT1-2 around GFF37

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF34 and GFF35 are separated by 160 nucleotidesGFF35 and GFF36 are separated by 79 nucleotidesGFF36 and GFF37 are separated by 127 nucleotidesGFF37 and GFF38 are separated by 28 nucleotidesGFF38 and GFF39 overlap by 4 nucleotides GFF34 - hypothetical protein, at 27,784 to 27,912 GFF34 GFF35 - hypothetical protein, at 28,073 to 28,234 GFF35 GFF36 - hypothetical protein, at 28,314 to 28,754 GFF36 GFF37 - tRNA-Thr-TGT, at 28,882 to 28,956 GFF37 GFF38 - FIG00636030: hypothetical protein, at 28,985 to 29,842 GFF38 GFF39 - Replication-associated recombination protein RarA, at 29,839 to 31,152 GFF39 Position (kb) 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.924 kb on - strandat 27.928 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.950 kb on + strandat 27.958 kb on - strandat 27.980 kb on - strandat 27.981 kb on + strandat 27.981 kb on - strandat 27.985 kb on - strandat 27.994 kb on + strandat 28.000 kb on + strandat 28.005 kb on + strandat 28.005 kb on + strandat 28.008 kb on - strandat 28.014 kb on + strandat 28.028 kb on - strandat 28.039 kb on + strandat 28.055 kb on - strandat 28.056 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.086 kb on + strandat 28.087 kb on + strandat 28.094 kb on - strand, within GFF35at 28.144 kb on - strand, within GFF35at 28.164 kb on + strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.215 kb on + strand, within GFF35at 28.215 kb on + strand, within GFF35at 28.223 kb on - strandat 28.311 kb on + strandat 28.311 kb on + strandat 28.369 kb on + strand, within GFF36at 28.373 kb on + strand, within GFF36at 28.387 kb on - strand, within GFF36at 28.387 kb on - strand, within GFF36at 28.425 kb on - strand, within GFF36at 28.433 kb on + strand, within GFF36at 28.433 kb on + strand, within GFF36at 28.436 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.445 kb on + strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.457 kb on + strand, within GFF36at 28.467 kb on + strand, within GFF36at 28.475 kb on - strand, within GFF36at 28.475 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.514 kb on - strand, within GFF36at 28.514 kb on - strand, within GFF36at 28.521 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.627 kb on - strand, within GFF36at 28.658 kb on + strand, within GFF36at 28.659 kb on + strand, within GFF36at 28.660 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.667 kb on - strand, within GFF36at 28.725 kb on + strandat 28.733 kb on - strandat 28.772 kb on - strandat 29.001 kb on + strandat 29.001 kb on + strandat 29.001 kb on + strandat 29.001 kb on + strandat 29.001 kb on + strandat 29.009 kb on - strandat 29.009 kb on - strandat 29.036 kb on + strandat 29.036 kb on + strandat 29.044 kb on - strandat 29.093 kb on + strand, within GFF38at 29.101 kb on - strand, within GFF38at 29.105 kb on + strand, within GFF38at 29.145 kb on + strand, within GFF38at 29.151 kb on + strand, within GFF38at 29.171 kb on - strand, within GFF38at 29.212 kb on + strand, within GFF38at 29.229 kb on + strand, within GFF38at 29.286 kb on + strand, within GFF38at 29.286 kb on + strand, within GFF38at 29.291 kb on + strand, within GFF38at 29.291 kb on + strand, within GFF38at 29.350 kb on - strand, within GFF38at 29.390 kb on - strand, within GFF38at 29.417 kb on - strand, within GFF38at 29.457 kb on + strand, within GFF38at 29.457 kb on + strand, within GFF38at 29.463 kb on + strand, within GFF38at 29.465 kb on - strand, within GFF38at 29.465 kb on - strand, within GFF38at 29.494 kb on - strand, within GFF38at 29.496 kb on + strand, within GFF38at 29.496 kb on - strand, within GFF38at 29.504 kb on - strand, within GFF38at 29.506 kb on + strand, within GFF38at 29.514 kb on - strand, within GFF38at 29.521 kb on + strand, within GFF38at 29.577 kb on + strand, within GFF38at 29.585 kb on - strand, within GFF38at 29.596 kb on + strand, within GFF38at 29.596 kb on + strand, within GFF38at 29.596 kb on + strand, within GFF38at 29.596 kb on + strand, within GFF38at 29.618 kb on + strand, within GFF38at 29.618 kb on + strand, within GFF38at 29.618 kb on + strand, within GFF38at 29.618 kb on + strand, within GFF38at 29.626 kb on - strand, within GFF38at 29.626 kb on - strand, within GFF38at 29.630 kb on + strand, within GFF38at 29.635 kb on + strand, within GFF38at 29.642 kb on + strand, within GFF38at 29.642 kb on + strand, within GFF38at 29.653 kb on - strand, within GFF38at 29.658 kb on - strand, within GFF38at 29.659 kb on - strand, within GFF38at 29.670 kb on + strand, within GFF38at 29.676 kb on - strand, within GFF38at 29.676 kb on - strand, within GFF38at 29.678 kb on - strand, within GFF38at 29.721 kb on + strand, within GFF38at 29.731 kb on + strand, within GFF38at 29.744 kb on - strand, within GFF38at 29.750 kb on - strand, within GFF38at 29.767 kb on - strandat 29.769 kb on + strandat 29.775 kb on + strandat 29.777 kb on - strandat 29.783 kb on - strandat 29.783 kb on - strandat 29.834 kb on + strandat 29.950 kb on - strandat 29.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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27,924 - +1.2
27,928 + -1.4
27,940 + -0.1
27,940 + -1.3
27,940 + -0.9
27,940 + -0.7
27,950 + -0.9
27,958 - -0.4
27,980 - -1.1
27,981 + -2.0
27,981 - +0.6
27,985 - -0.3
27,994 + -0.2
28,000 + +0.3
28,005 + +0.2
28,005 + -0.3
28,008 - +0.3
28,014 + +0.5
28,028 - -0.4
28,039 + -2.1
28,055 - +1.2
28,056 - -0.4
28,063 - +0.3
28,063 - -0.7
28,063 - -0.8
28,063 - +1.1
28,086 + -0.2
28,087 + +1.0
28,094 - GFF35 0.13 +1.1
28,144 - GFF35 0.44 -0.1
28,164 + GFF35 0.56 +0.7
28,172 - GFF35 0.61 +0.1
28,172 - GFF35 0.61 -0.4
28,172 - GFF35 0.61 -1.2
28,172 - GFF35 0.61 +0.2
28,172 - GFF35 0.61 -0.1
28,215 + GFF35 0.88 -0.8
28,215 + GFF35 0.88 +0.9
28,223 - -2.4
28,311 + -0.5
28,311 + +0.2
28,369 + GFF36 0.12 -1.2
28,373 + GFF36 0.13 -1.9
28,387 - GFF36 0.17 +0.5
28,387 - GFF36 0.17 +0.7
28,425 - GFF36 0.25 +0.6
28,433 + GFF36 0.27 -0.1
28,433 + GFF36 0.27 -1.3
28,436 - GFF36 0.28 +0.0
28,441 - GFF36 0.29 +0.7
28,441 - GFF36 0.29 +0.6
28,441 - GFF36 0.29 +0.6
28,441 - GFF36 0.29 -1.0
28,441 - GFF36 0.29 -0.9
28,443 + GFF36 0.29 -0.9
28,443 + GFF36 0.29 +1.3
28,443 + GFF36 0.29 -0.4
28,445 + GFF36 0.30 +1.0
28,451 - GFF36 0.31 +0.6
28,451 - GFF36 0.31 +1.1
28,451 - GFF36 0.31 -0.4
28,457 + GFF36 0.32 +0.9
28,467 + GFF36 0.35 -0.3
28,475 - GFF36 0.37 +0.6
28,475 - GFF36 0.37 +0.6
28,498 - GFF36 0.42 +0.1
28,498 - GFF36 0.42 +0.6
28,498 - GFF36 0.42 -0.8
28,498 - GFF36 0.42 -0.4
28,514 - GFF36 0.45 +1.3
28,514 - GFF36 0.45 -0.2
28,521 + GFF36 0.47 -1.5
28,616 + GFF36 0.68 -0.4
28,616 + GFF36 0.68 -0.4
28,616 + GFF36 0.68 +0.7
28,624 - GFF36 0.70 +1.0
28,624 - GFF36 0.70 -0.4
28,624 - GFF36 0.70 -0.0
28,624 - GFF36 0.70 +1.0
28,624 - GFF36 0.70 +0.7
28,627 - GFF36 0.71 +0.4
28,658 + GFF36 0.78 -1.0
28,659 + GFF36 0.78 -2.8
28,660 - GFF36 0.78 +0.6
28,666 - GFF36 0.80 +0.3
28,666 - GFF36 0.80 +0.6
28,666 - GFF36 0.80 -0.3
28,666 - GFF36 0.80 -0.4
28,666 - GFF36 0.80 -0.3
28,667 - GFF36 0.80 -2.3
28,725 + +0.9
28,733 - +0.4
28,772 - +1.2
29,001 + -0.0
29,001 + +0.5
29,001 + -0.8
29,001 + -0.0
29,001 + -0.8
29,009 - +0.1
29,009 - -0.5
29,036 + -0.8
29,036 + -2.0
29,044 - -1.4
29,093 + GFF38 0.13 +0.6
29,101 - GFF38 0.14 +0.9
29,105 + GFF38 0.14 -0.6
29,145 + GFF38 0.19 -0.2
29,151 + GFF38 0.19 +0.9
29,171 - GFF38 0.22 -0.7
29,212 + GFF38 0.26 -0.5
29,229 + GFF38 0.28 -0.4
29,286 + GFF38 0.35 -2.0
29,286 + GFF38 0.35 -0.7
29,291 + GFF38 0.36 +0.3
29,291 + GFF38 0.36 -0.2
29,350 - GFF38 0.43 +0.8
29,390 - GFF38 0.47 -2.2
29,417 - GFF38 0.50 -0.3
29,457 + GFF38 0.55 -1.0
29,457 + GFF38 0.55 -1.3
29,463 + GFF38 0.56 -0.3
29,465 - GFF38 0.56 -1.4
29,465 - GFF38 0.56 -2.1
29,494 - GFF38 0.59 -1.7
29,496 + GFF38 0.60 -0.4
29,496 - GFF38 0.60 +0.7
29,504 - GFF38 0.60 -0.0
29,506 + GFF38 0.61 -0.6
29,514 - GFF38 0.62 -0.5
29,521 + GFF38 0.62 +0.2
29,577 + GFF38 0.69 +0.6
29,585 - GFF38 0.70 -0.1
29,596 + GFF38 0.71 -1.9
29,596 + GFF38 0.71 -1.6
29,596 + GFF38 0.71 +0.7
29,596 + GFF38 0.71 +0.8
29,618 + GFF38 0.74 +0.6
29,618 + GFF38 0.74 -0.4
29,618 + GFF38 0.74 +0.2
29,618 + GFF38 0.74 +0.7
29,626 - GFF38 0.75 +1.0
29,626 - GFF38 0.75 -0.5
29,630 + GFF38 0.75 -1.4
29,635 + GFF38 0.76 +0.4
29,642 + GFF38 0.77 +0.0
29,642 + GFF38 0.77 -0.2
29,653 - GFF38 0.78 -0.1
29,658 - GFF38 0.78 -0.5
29,659 - GFF38 0.79 +1.4
29,670 + GFF38 0.80 -0.5
29,676 - GFF38 0.81 -0.3
29,676 - GFF38 0.81 +0.3
29,678 - GFF38 0.81 +0.5
29,721 + GFF38 0.86 -0.2
29,731 + GFF38 0.87 -0.7
29,744 - GFF38 0.88 +0.0
29,750 - GFF38 0.89 +0.6
29,767 - -0.3
29,769 + +0.3
29,775 + -0.3
29,777 - -0.3
29,783 - +0.7
29,783 - +0.4
29,834 + +1.0
29,950 - -0.6
29,952 - -0.2

Or see this region's nucleotide sequence