Strain Fitness in Sphingobium sp. HT1-2 around GFF3697

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,740,416	+		GFF3696	0.32	-0.8
3,740,416	+		GFF3696	0.32	-0.7
3,740,426	+		GFF3696	0.33	-1.9
3,740,426	+		GFF3696	0.33	+0.2
3,740,426	+		GFF3696	0.33	-1.1
3,740,426	+		GFF3696	0.33	-0.7
3,740,434	-		GFF3696	0.34	-1.1
3,740,434	-		GFF3696	0.34	-1.5
3,740,449	-		GFF3696	0.36	+2.1
3,740,450	-		GFF3696	0.36	-0.6
3,740,453	+		GFF3696	0.36	-2.1
3,740,465	+		GFF3696	0.37	-1.5
3,740,476	+		GFF3696	0.38	-0.9
3,740,476	+		GFF3696	0.38	-1.6
3,740,484	-		GFF3696	0.39	+0.4
3,740,484	-		GFF3696	0.39	+1.5
3,740,500	-		GFF3696	0.41	-2.3
3,740,502	-		GFF3696	0.41	+1.2
3,740,609	+		GFF3696	0.51	-0.7
3,740,609	-		GFF3696	0.51	-1.6
3,740,614	+		GFF3696	0.52	-1.2
3,740,614	+		GFF3696	0.52	-0.3
3,740,614	+		GFF3696	0.52	+0.5
3,740,615	-		GFF3696	0.52	+0.8
3,740,627	-		GFF3696	0.53	-0.1
3,740,646	+		GFF3696	0.55	-0.2
3,740,672	+		GFF3696	0.58	+0.4
3,740,750	-		GFF3696	0.65	-0.7
3,740,756	-		GFF3696	0.66	-0.3
3,740,786	-		GFF3696	0.69	+0.2
3,740,786	-		GFF3696	0.69	-0.2
3,740,786	-		GFF3696	0.69	-0.1
3,740,800	+		GFF3696	0.70	+0.5
3,740,808	-		GFF3696	0.71	-0.6
3,740,833	+		GFF3696	0.74	-0.3
3,740,839	-		GFF3696	0.74	-0.4
3,740,851	-		GFF3696	0.76	-1.2
3,740,862	-		GFF3696	0.77	-0.4
3,740,875	+		GFF3696	0.78	-0.3
3,740,875	+		GFF3696	0.78	-0.6
3,740,875	+		GFF3696	0.78	+0.1
3,740,883	-		GFF3696	0.79	-1.6
3,740,883	-		GFF3696	0.79	-0.5
3,740,897	+		GFF3696	0.80	+0.9
3,740,905	-		GFF3696	0.81	-0.3
3,740,905	-		GFF3696	0.81	+1.0
3,740,905	-		GFF3696	0.81	+0.6
3,740,915	+		GFF3696	0.82	-0.2
3,740,915	-		GFF3696	0.82	+0.4
3,740,942	+		GFF3696	0.85	+1.6
3,740,958	+		GFF3696	0.86	+0.3
3,740,958	+		GFF3696	0.86	+0.5
3,740,958	+		GFF3696	0.86	+0.2
3,740,958	+		GFF3696	0.86	+0.4
3,740,966	-		GFF3696	0.87	-0.1
3,740,966	-		GFF3696	0.87	-0.5
3,740,971	-		GFF3696	0.87	+0.4
3,740,998	+				+1.3
3,740,999	-				-0.8
3,741,006	-				+1.1
3,741,006	-				-0.1
3,741,006	-				-0.0
3,741,008	+				-1.0
3,741,008	+				-0.4
3,741,023	+				-1.3
3,741,083	-				+0.4
3,741,110	-				+0.7
3,741,110	-				-0.1
3,741,110	-				+0.0
3,741,110	-				-0.1
3,741,110	-				+0.3
3,741,110	-				+0.2
3,741,110	-				+0.1
3,741,110	-				-1.2
3,741,110	-				+0.5
3,741,193	+				-0.1
3,741,193	+				+0.3
3,741,201	-				+0.4
3,741,208	-				-0.2
3,741,285	+				-0.3
3,741,285	+				+0.5
3,741,285	+				-0.6
3,741,307	+				+0.8
3,741,307	+				+1.1
3,741,312	+				-2.8
3,741,345	+				-1.3
3,741,353	-				-0.1
3,741,353	-				-1.0
3,741,353	-				-0.6
3,741,362	+				-1.8
3,741,372	+				-1.2
3,741,372	+				+0.6
3,741,372	+				-1.8
3,741,372	+				-2.2
3,741,394	-				-2.3
3,741,406	+				-1.4
3,741,414	+				-1.3
3,741,422	-				-2.9
3,741,422	-				-1.2
3,741,435	+				-1.6
3,741,435	+				-1.7
3,741,443	-				-2.4
3,741,465	+				-2.3
3,741,468	-				-3.2
3,741,469	+				-1.1
3,741,469	+				-1.1
3,741,477	-				-1.9
3,741,479	+				-2.8
3,741,494	-				-1.9
3,741,505	+				-1.3
3,741,515	+		GFF3697	0.10	-1.8
3,741,523	-		GFF3697	0.11	-2.8
3,741,549	+		GFF3697	0.13	-0.8
3,741,570	+		GFF3697	0.15	-1.2
3,741,611	+		GFF3697	0.18	-0.5
3,741,611	+		GFF3697	0.18	-2.9
3,741,611	+		GFF3697	0.18	-1.6
3,741,619	-		GFF3697	0.19	-1.8
3,741,619	-		GFF3697	0.19	-2.8
3,741,620	-		GFF3697	0.19	-2.8
3,741,637	+		GFF3697	0.20	-1.4
3,741,647	+		GFF3697	0.21	-2.6
3,741,655	+		GFF3697	0.22	-1.2
3,741,655	-		GFF3697	0.22	-1.9
3,741,662	-		GFF3697	0.22	-2.6
3,741,662	-		GFF3697	0.22	-2.0
3,741,663	-		GFF3697	0.22	-1.7
3,741,663	-		GFF3697	0.22	-2.0
3,741,663	-		GFF3697	0.22	-1.3
3,741,673	-		GFF3697	0.23	-3.2
3,741,690	-		GFF3697	0.25	-1.3
3,741,725	+		GFF3697	0.27	-1.9
3,741,758	+		GFF3697	0.30	-2.1
3,741,766	+		GFF3697	0.31	-1.7
3,741,784	-		GFF3697	0.32	-2.3
3,741,789	-		GFF3697	0.33	-2.7
3,741,789	-		GFF3697	0.33	-3.0
3,741,789	-		GFF3697	0.33	-2.1
3,741,791	+		GFF3697	0.33	-0.8
3,741,804	-		GFF3697	0.34	-3.0
3,741,822	-		GFF3697	0.35	-1.9
3,741,846	+		GFF3697	0.37	-0.8
3,741,846	+		GFF3697	0.37	-0.9
3,741,846	+		GFF3697	0.37	-1.6
3,741,846	+		GFF3697	0.37	-1.3
3,741,846	+		GFF3697	0.37	-0.3
3,741,854	-		GFF3697	0.38	-2.8
3,741,854	-		GFF3697	0.38	-2.0
3,741,854	-		GFF3697	0.38	-1.4
3,741,867	-		GFF3697	0.39	-0.6
3,741,948	+		GFF3697	0.46	-1.3
3,741,951	+		GFF3697	0.46	-1.2
3,741,956	+		GFF3697	0.46	-2.4
3,741,956	+		GFF3697	0.46	-2.4
3,741,956	-		GFF3697	0.46	-1.7
3,741,959	-		GFF3697	0.47	-2.6
3,741,966	-		GFF3697	0.47	-3.3
3,741,969	-		GFF3697	0.47	-3.0
3,741,975	+		GFF3697	0.48	-3.6
3,741,983	-		GFF3697	0.49	-1.7
3,741,983	-		GFF3697	0.49	-0.8
3,741,983	-		GFF3697	0.49	-0.4
3,741,991	-		GFF3697	0.49	-1.6
3,742,013	-		GFF3697	0.51	-2.3
3,742,126	-		GFF3697	0.60	-1.3
3,742,174	+		GFF3697	0.64	-2.5
3,742,174	+		GFF3697	0.64	-1.4
3,742,185	+		GFF3697	0.65	+0.1
3,742,186	-		GFF3697	0.65	-1.3
3,742,193	-		GFF3697	0.66	-3.4
3,742,233	-		GFF3697	0.69	-2.0
3,742,253	-		GFF3697	0.71	-2.4
3,742,262	+		GFF3697	0.71	-1.8
3,742,267	+		GFF3697	0.72	-1.8
3,742,267	+		GFF3697	0.72	-1.8
3,742,277	+		GFF3697	0.73	-1.2
3,742,277	+		GFF3697	0.73	-1.6
3,742,277	+		GFF3697	0.73	-2.2
3,742,277	+		GFF3697	0.73	-3.3
3,742,277	+		GFF3697	0.73	-3.1
3,742,285	-		GFF3697	0.73	-1.6
3,742,285	-		GFF3697	0.73	-2.8
3,742,302	+		GFF3697	0.75	-0.8
3,742,340	+		GFF3697	0.78	-2.8
3,742,348	-		GFF3697	0.78	-2.9
3,742,358	+		GFF3697	0.79	-1.6
3,742,439	+		GFF3697	0.86	-2.0
3,742,444	-		GFF3697	0.86	-1.1
3,742,447	-		GFF3697	0.87	-1.5
3,742,447	-		GFF3697	0.87	-0.8
3,742,447	-		GFF3697	0.87	-2.4
3,742,507	+				-3.3
3,742,508	-				-1.8
3,742,528	+				-1.9
3,742,528	+				-3.0
3,742,528	+				-1.6
3,742,528	+				-0.6
3,742,528	+				-1.4
3,742,536	-				-0.9
3,742,536	-				-2.1
3,742,553	-				-3.0
3,742,646	-				-0.2
3,742,705	+				+0.0
3,742,716	+				+0.3
3,742,718	+				-1.1
3,742,731	+				+0.4
3,742,731	+				-1.9
3,742,754	+				+0.3
3,742,768	-				-0.1
3,742,784	-				-1.3
3,742,784	-				+1.1
3,742,802	+				+1.0
3,742,802	+				+0.1
3,742,810	-				+0.0
3,742,810	-				+2.6
3,742,810	-				+0.1
3,742,871	+				-1.4
3,742,890	+		GFF3698	0.12	+0.6
3,742,898	+		GFF3698	0.14	+0.3
3,742,906	-		GFF3698	0.15	+0.4
3,742,913	+		GFF3698	0.16	-0.5
3,742,953	+		GFF3698	0.22	-0.5
3,742,953	+		GFF3698	0.22	+1.5
3,742,970	+		GFF3698	0.24	+0.6
3,742,978	-		GFF3698	0.25	-2.5
3,742,978	-		GFF3698	0.25	+1.5
3,742,998	-		GFF3698	0.28	-0.8
3,743,018	-		GFF3698	0.31	-0.2
3,743,047	-		GFF3698	0.36	+0.8
3,743,107	-		GFF3698	0.45	-0.2
3,743,121	-		GFF3698	0.47	+0.3
3,743,126	-		GFF3698	0.47	-0.8
3,743,133	+		GFF3698	0.49	-1.2
3,743,133	+		GFF3698	0.49	-0.2
3,743,149	-		GFF3698	0.51	+0.2
3,743,152	-		GFF3698	0.51	-0.5
3,743,176	-		GFF3698	0.55	+0.3
3,743,176	-		GFF3698	0.55	-1.3
3,743,202	-		GFF3698	0.59	+1.1
3,743,205	+		GFF3698	0.59	-1.3
3,743,205	+		GFF3698	0.59	+0.1
3,743,205	+		GFF3698	0.59	+0.8
3,743,213	-		GFF3698	0.60	-2.6
3,743,216	+		GFF3698	0.61	+0.1
3,743,245	+		GFF3698	0.65	+0.7
3,743,271	-		GFF3698	0.69	-0.0
3,743,291	-		GFF3698	0.72	+1.8
3,743,303	-		GFF3698	0.74	+0.2
3,743,307	+		GFF3698	0.74	+1.3
3,743,308	-		GFF3698	0.75	-0.5
3,743,315	-		GFF3698	0.76	-0.3
3,743,315	-		GFF3698	0.76	-1.3
3,743,315	-		GFF3698	0.76	+0.9
3,743,333	-		GFF3698	0.78	+2.5
3,743,342	-		GFF3698	0.80	+0.2
3,743,360	-		GFF3698	0.82	-0.2
3,743,364	+		GFF3698	0.83	-1.4
3,743,411	-				-1.2
3,743,581	-				-1.6
3,743,582	+				-2.2
3,743,583	+				-0.8