Strain Fitness in Sphingobium sp. HT1-2 around GFF3659

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,701,647	+		GFF3658	0.50	+0.8
3,701,647	+		GFF3658	0.50	-0.9
3,701,647	+		GFF3658	0.50	+0.9
3,701,647	+		GFF3658	0.50	+0.2
3,701,647	-		GFF3658	0.50	-1.6
3,701,690	+		GFF3658	0.52	+0.1
3,701,690	+		GFF3658	0.52	+0.6
3,701,703	+		GFF3658	0.52	+0.3
3,701,708	+		GFF3658	0.53	+0.4
3,701,709	+		GFF3658	0.53	-0.7
3,701,722	-		GFF3658	0.53	-1.0
3,701,739	+		GFF3658	0.54	-1.5
3,701,739	+		GFF3658	0.54	-0.1
3,701,747	+		GFF3658	0.55	+1.2
3,701,747	+		GFF3658	0.55	+1.2
3,701,747	-		GFF3658	0.55	+0.5
3,701,747	-		GFF3658	0.55	-1.5
3,701,747	-		GFF3658	0.55	-1.0
3,701,755	-		GFF3658	0.55	+0.1
3,701,760	-		GFF3658	0.55	+0.2
3,701,764	+		GFF3658	0.55	+1.5
3,701,764	+		GFF3658	0.55	+1.0
3,701,772	-		GFF3658	0.56	+0.2
3,701,772	-		GFF3658	0.56	-1.0
3,701,782	-		GFF3658	0.56	-0.5
3,701,782	-		GFF3658	0.56	+0.2
3,701,782	-		GFF3658	0.56	-0.4
3,701,793	+		GFF3658	0.57	+0.3
3,701,793	+		GFF3658	0.57	+0.6
3,701,793	+		GFF3658	0.57	+0.2
3,701,793	+		GFF3658	0.57	+0.4
3,701,793	+		GFF3658	0.57	+0.6
3,701,793	+		GFF3658	0.57	+0.5
3,701,793	+		GFF3658	0.57	-1.2
3,701,793	+		GFF3658	0.57	+0.2
3,701,793	+		GFF3658	0.57	+0.0
3,701,796	-		GFF3658	0.57	+0.2
3,701,799	+		GFF3658	0.57	-0.7
3,701,801	-		GFF3658	0.57	+0.0
3,701,801	-		GFF3658	0.57	-2.6
3,701,801	-		GFF3658	0.57	-0.6
3,701,801	-		GFF3658	0.57	-0.0
3,701,801	-		GFF3658	0.57	-2.0
3,701,801	-		GFF3658	0.57	-0.5
3,701,801	-		GFF3658	0.57	+0.2
3,701,801	-		GFF3658	0.57	+0.0
3,701,831	-		GFF3658	0.59	+0.0
3,701,831	-		GFF3658	0.59	-0.7
3,701,833	+		GFF3658	0.59	-1.7
3,701,833	+		GFF3658	0.59	-0.9
3,701,833	+		GFF3658	0.59	-0.3
3,701,833	+		GFF3658	0.59	-1.0
3,701,836	-		GFF3658	0.59	+0.1
3,701,839	-		GFF3658	0.59	-0.7
3,701,839	-		GFF3658	0.59	+0.3
3,701,841	-		GFF3658	0.59	-0.4
3,701,853	-		GFF3658	0.60	-0.2
3,701,873	+		GFF3658	0.61	+1.1
3,701,881	-		GFF3658	0.61	+0.7
3,701,881	-		GFF3658	0.61	+0.7
3,701,890	-		GFF3658	0.62	-0.2
3,701,897	+		GFF3658	0.62	+0.5
3,701,897	+		GFF3658	0.62	-0.8
3,701,911	+		GFF3658	0.63	-0.5
3,701,911	+		GFF3658	0.63	-1.7
3,701,911	+		GFF3658	0.63	+0.3
3,701,912	+		GFF3658	0.63	-1.5
3,701,912	+		GFF3658	0.63	-1.7
3,701,912	+		GFF3658	0.63	-1.6
3,701,912	+		GFF3658	0.63	-1.0
3,701,912	+		GFF3658	0.63	-0.4
3,701,920	-		GFF3658	0.63	-0.8
3,701,920	-		GFF3658	0.63	+0.0
3,701,920	-		GFF3658	0.63	+0.2
3,701,920	-		GFF3658	0.63	-0.9
3,701,920	-		GFF3658	0.63	-0.1
3,701,930	-		GFF3658	0.63	-0.4
3,701,948	-		GFF3658	0.64	-0.8
3,701,949	+		GFF3658	0.64	+0.2
3,701,949	+		GFF3658	0.64	-2.0
3,701,949	+		GFF3658	0.64	-1.0
3,701,949	+		GFF3658	0.64	+0.6
3,701,957	-		GFF3658	0.65	-0.5
3,701,959	+		GFF3658	0.65	+2.0
3,701,966	+		GFF3658	0.65	-0.2
3,701,974	-		GFF3658	0.66	-1.6
3,701,974	-		GFF3658	0.66	-0.5
3,701,980	-		GFF3658	0.66	-2.0
3,701,984	+		GFF3658	0.66	-0.5
3,702,012	-		GFF3658	0.67	+0.1
3,702,034	+		GFF3658	0.69	+0.9
3,702,036	+		GFF3658	0.69	-0.2
3,702,044	-		GFF3658	0.69	-0.4
3,702,044	-		GFF3658	0.69	-2.2
3,702,075	+		GFF3658	0.71	-1.7
3,702,076	+		GFF3658	0.71	+0.6
3,702,076	+		GFF3658	0.71	-1.5
3,702,076	+		GFF3658	0.71	-0.0
3,702,076	+		GFF3658	0.71	-0.8
3,702,076	+		GFF3658	0.71	-0.2
3,702,076	+		GFF3658	0.71	-0.2
3,702,076	+		GFF3658	0.71	+0.1
3,702,081	+		GFF3658	0.71	-1.4
3,702,081	+		GFF3658	0.71	-0.5
3,702,084	-		GFF3658	0.71	+0.5
3,702,084	-		GFF3658	0.71	-1.0
3,702,084	-		GFF3658	0.71	+0.1
3,702,084	-		GFF3658	0.71	-0.5
3,702,084	-		GFF3658	0.71	-0.2
3,702,084	-		GFF3658	0.71	+0.3
3,702,091	+		GFF3658	0.71	-1.4
3,702,091	+		GFF3658	0.71	-0.3
3,702,091	+		GFF3658	0.71	+0.1
3,702,099	-		GFF3658	0.72	-0.7
3,702,099	-		GFF3658	0.72	+0.2
3,702,114	+		GFF3658	0.72	-0.1
3,702,114	+		GFF3658	0.72	-1.0
3,702,119	+		GFF3658	0.73	+0.7
3,702,135	-		GFF3658	0.73	-0.2
3,702,144	+		GFF3658	0.74	+0.1
3,702,162	-		GFF3658	0.75	-0.1
3,702,163	+		GFF3658	0.75	+1.7
3,702,163	+		GFF3658	0.75	-1.6
3,702,167	-		GFF3658	0.75	-1.9
3,702,171	-		GFF3658	0.75	+0.8
3,702,171	-		GFF3658	0.75	+0.2
3,702,171	-		GFF3658	0.75	+0.3
3,702,171	-		GFF3658	0.75	+0.7
3,702,171	-		GFF3658	0.75	-0.7
3,702,185	-		GFF3658	0.76	-0.2
3,702,202	+		GFF3658	0.77	+0.3
3,702,202	+		GFF3658	0.77	+0.2
3,702,210	-		GFF3658	0.77	-0.9
3,702,220	-		GFF3658	0.78	-0.7
3,702,222	+		GFF3658	0.78	-1.0
3,702,222	+		GFF3658	0.78	+1.3
3,702,222	+		GFF3658	0.78	-0.7
3,702,222	+		GFF3658	0.78	+0.2
3,702,222	+		GFF3658	0.78	+0.6
3,702,222	+		GFF3658	0.78	-1.6
3,702,222	+		GFF3658	0.78	-0.6
3,702,222	+		GFF3658	0.78	-2.1
3,702,222	+		GFF3658	0.78	-1.0
3,702,230	-		GFF3658	0.78	-0.7
3,702,230	-		GFF3658	0.78	-0.2
3,702,230	-		GFF3658	0.78	-0.8
3,702,230	-		GFF3658	0.78	+0.5
3,702,230	-		GFF3658	0.78	-1.9
3,702,230	-		GFF3658	0.78	-0.8
3,702,230	-		GFF3658	0.78	-0.5
3,702,230	-		GFF3658	0.78	-0.9
3,702,230	-		GFF3658	0.78	-0.9
3,702,230	-		GFF3658	0.78	+0.2
3,702,230	-		GFF3658	0.78	+0.6
3,702,230	-		GFF3658	0.78	+0.2
3,702,242	-		GFF3658	0.79	-1.0
3,702,261	-		GFF3658	0.80	+0.6
3,702,261	-		GFF3658	0.80	-0.2
3,702,261	-		GFF3658	0.80	-0.4
3,702,271	+		GFF3658	0.80	-1.5
3,702,271	+		GFF3658	0.80	-0.4
3,702,271	-		GFF3658	0.80	+0.7
3,702,279	-		GFF3658	0.80	-0.8
3,702,279	-		GFF3658	0.80	-1.3
3,702,279	-		GFF3658	0.80	-0.1
3,702,279	-		GFF3658	0.80	+0.8
3,702,279	-		GFF3658	0.80	+0.1
3,702,284	-		GFF3658	0.81	+0.1
3,702,291	+		GFF3658	0.81	+0.1
3,702,291	+		GFF3658	0.81	+1.1
3,702,296	+		GFF3658	0.81	-0.5
3,702,306	+		GFF3658	0.82	-1.3
3,702,306	+		GFF3658	0.82	-0.8
3,702,333	-		GFF3658	0.83	+0.1
3,702,337	-		GFF3658	0.83	+0.3
3,702,339	-		GFF3658	0.83	-0.4
3,702,344	-		GFF3658	0.84	+1.1
3,702,349	+		GFF3658	0.84	+1.3
3,702,350	+		GFF3658	0.84	-1.2
3,702,356	+		GFF3658	0.84	+1.0
3,702,371	+		GFF3658	0.85	+0.6
3,702,374	-		GFF3658	0.85	-1.9
3,702,395	+		GFF3658	0.86	-1.5
3,702,402	+		GFF3658	0.86	-0.7
3,702,402	+		GFF3658	0.86	-0.7
3,702,402	+		GFF3658	0.86	+1.0
3,702,402	+		GFF3658	0.86	-1.6
3,702,402	+		GFF3658	0.86	+0.0
3,702,410	-		GFF3658	0.87	-0.3
3,702,410	-		GFF3658	0.87	+0.9
3,702,425	-		GFF3658	0.88	-0.0
3,702,439	+		GFF3658	0.88	-0.3
3,702,439	+		GFF3658	0.88	-0.9
3,702,439	-		GFF3658	0.88	-1.2
3,702,444	+		GFF3658	0.88	+0.8
3,702,449	+		GFF3658	0.89	+1.2
3,702,449	+		GFF3658	0.89	+0.8
3,702,449	+		GFF3658	0.89	-2.2
3,702,449	+		GFF3658	0.89	-0.2
3,702,449	+		GFF3658	0.89	-0.9
3,702,457	-		GFF3658	0.89	-0.5
3,702,457	-		GFF3658	0.89	-1.4
3,702,457	-		GFF3658	0.89	-1.0
3,702,457	-		GFF3658	0.89	-0.4
3,702,457	-		GFF3658	0.89	-0.1
3,702,457	-		GFF3658	0.89	-0.8
3,702,489	+				-2.5
3,702,494	+				-0.4
3,702,494	+				-1.4
3,702,494	-				-0.4
3,702,502	-				-0.7
3,702,502	-				+0.2
3,702,502	-				-0.2
3,702,502	-				-1.3
3,702,507	-				-0.4
3,702,513	-				-1.4
3,702,513	-				-0.8
3,702,513	-				-0.4
3,702,515	+				+0.5
3,702,520	+				-0.5
3,702,520	+				+0.7
3,702,523	-				-0.8
3,702,523	-				+0.2
3,702,528	-				+0.6
3,702,528	-				-0.6
3,702,528	-				-0.4
3,702,529	-				-0.2
3,702,539	-				+0.3
3,702,559	+				+0.5
3,702,601	+				-0.5
3,702,604	-				-0.8
3,702,608	-				-1.4
3,702,613	+				+0.2
3,702,640	-				-0.1
3,702,675	+				-0.4
3,702,677	+				+0.3
3,702,682	+				-1.7
3,702,682	+				-0.3
3,702,682	+				-0.5
3,702,682	+				+0.6
3,702,682	+				+0.4
3,702,682	+				-0.0
3,702,682	+				+0.4
3,702,682	+				-1.7
3,702,682	+				-0.7
3,702,682	+				-1.0
3,702,682	+				-1.5
3,702,682	+				-0.9
3,702,682	+				-1.4
3,702,682	+				+1.2
3,702,687	+				-1.8
3,702,687	-				-0.3
3,702,690	-				+0.1
3,702,690	-				+1.1
3,702,690	-				+0.2
3,702,690	-				-0.4
3,702,690	-				-0.6
3,702,690	-				-0.7
3,702,690	-				-1.3
3,702,690	-				-0.3
3,702,690	-				-0.7
3,702,690	-				+0.0
3,702,690	-				+0.7
3,702,690	-				-0.1
3,702,695	-				+1.8
3,702,695	-				-1.5
3,702,695	-				+0.1
3,702,712	+				-1.4
3,702,712	+				+0.7
3,702,731	+				+0.4
3,702,737	+				-0.8
3,702,739	-				-0.7
3,702,739	-				-0.5
3,702,760	-		GFF3659	0.10	-1.9
3,702,780	+		GFF3659	0.12	-0.1
3,702,842	+		GFF3659	0.17	-0.7
3,702,854	+		GFF3659	0.18	-0.7
3,702,854	+		GFF3659	0.18	-0.5
3,702,856	-		GFF3659	0.18	-1.2
3,702,860	+		GFF3659	0.19	-1.1
3,702,889	-		GFF3659	0.21	+0.0
3,702,896	+		GFF3659	0.22	-0.1
3,702,900	+		GFF3659	0.22	-0.9
3,702,900	+		GFF3659	0.22	+0.3
3,702,900	+		GFF3659	0.22	+0.3
3,702,900	+		GFF3659	0.22	-0.8
3,702,904	-		GFF3659	0.22	+0.4
3,702,908	-		GFF3659	0.23	+0.2
3,702,908	-		GFF3659	0.23	-1.7
3,702,913	-		GFF3659	0.23	+0.2
3,702,951	-		GFF3659	0.26	-3.1
3,702,956	-		GFF3659	0.27	-1.2
3,702,967	-		GFF3659	0.27	-0.7
3,702,981	+		GFF3659	0.29	-1.4
3,702,984	-		GFF3659	0.29	-0.1
3,702,986	-		GFF3659	0.29	-2.5
3,702,991	+		GFF3659	0.29	-0.7
3,702,991	+		GFF3659	0.29	-1.2
3,702,991	+		GFF3659	0.29	+0.1
3,702,991	+		GFF3659	0.29	-0.1
3,702,991	+		GFF3659	0.29	-1.1
3,702,991	+		GFF3659	0.29	-1.8
3,702,991	+		GFF3659	0.29	+2.1
3,702,999	-		GFF3659	0.30	-1.2
3,702,999	-		GFF3659	0.30	-1.0
3,702,999	-		GFF3659	0.30	-0.2
3,702,999	-		GFF3659	0.30	-1.7
3,702,999	-		GFF3659	0.30	+0.4
3,702,999	-		GFF3659	0.30	+0.3
3,702,999	-		GFF3659	0.30	-1.2
3,702,999	-		GFF3659	0.30	-0.7
3,702,999	-		GFF3659	0.30	+0.3
3,702,999	-		GFF3659	0.30	-0.9
3,703,004	-		GFF3659	0.31	+0.4
3,703,009	+		GFF3659	0.31	+0.1
3,703,032	-		GFF3659	0.33	+0.4
3,703,037	+		GFF3659	0.33	-1.4
3,703,047	+		GFF3659	0.34	-0.7
3,703,047	+		GFF3659	0.34	+0.0
3,703,055	-		GFF3659	0.35	+0.8
3,703,055	-		GFF3659	0.35	-0.4
3,703,060	+		GFF3659	0.35	-0.9
3,703,060	+		GFF3659	0.35	+0.6
3,703,068	-		GFF3659	0.36	-1.2
3,703,068	-		GFF3659	0.36	+0.9
3,703,093	+		GFF3659	0.38	+0.1
3,703,097	+		GFF3659	0.38	-1.4
3,703,097	+		GFF3659	0.38	+0.6
3,703,114	+		GFF3659	0.40	-0.2
3,703,126	+		GFF3659	0.41	+0.2
3,703,126	+		GFF3659	0.41	-0.5
3,703,127	-		GFF3659	0.41	+0.2
3,703,134	-		GFF3659	0.41	-0.8
3,703,134	-		GFF3659	0.41	-1.1
3,703,144	+		GFF3659	0.42	-1.1
3,703,147	-		GFF3659	0.43	+0.3
3,703,148	+		GFF3659	0.43	-0.5
3,703,153	+		GFF3659	0.43	-0.8
3,703,153	+		GFF3659	0.43	-0.4
3,703,159	+		GFF3659	0.44	+0.8
3,703,161	-		GFF3659	0.44	+0.1
3,703,167	-		GFF3659	0.44	-1.9
3,703,213	-		GFF3659	0.48	+0.2
3,703,240	-		GFF3659	0.50	-1.4
3,703,244	+		GFF3659	0.51	-0.6
3,703,257	+		GFF3659	0.52	-0.5
3,703,260	-		GFF3659	0.52	-2.0
3,703,265	-		GFF3659	0.52	-2.5
3,703,265	-		GFF3659	0.52	-0.5
3,703,271	+		GFF3659	0.53	+1.0
3,703,271	+		GFF3659	0.53	-1.6
3,703,279	+		GFF3659	0.54	+1.1
3,703,279	+		GFF3659	0.54	-1.4
3,703,279	+		GFF3659	0.54	-0.5
3,703,279	+		GFF3659	0.54	-1.8
3,703,279	-		GFF3659	0.54	-0.2
3,703,287	-		GFF3659	0.54	-1.6
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