Strain Fitness in Sphingobium sp. HT1-2 around GFF3650

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,692,210	+		GFF3648	0.61	+0.0
3,692,217	+		GFF3648	0.62	+0.3
3,692,217	+		GFF3648	0.62	-1.6
3,692,262	-		GFF3648	0.67	+0.9
3,692,297	-		GFF3648	0.71	+1.4
3,692,297	-		GFF3648	0.71	-0.1
3,692,310	-		GFF3648	0.72	+0.6
3,692,312	-		GFF3648	0.73	+0.1
3,692,329	+		GFF3648	0.74	+0.9
3,692,337	-		GFF3648	0.75	-0.9
3,692,345	-		GFF3648	0.76	-0.9
3,692,345	-		GFF3648	0.76	-0.7
3,692,433	-		GFF3648	0.86	-1.5
3,692,450	-		GFF3648	0.88	+0.4
3,692,513	+				-0.1
3,692,513	+				+0.9
3,692,518	+				+0.7
3,692,531	-				-0.5
3,692,531	-				+0.8
3,692,576	+				-0.5
3,692,576	+				+0.7
3,692,576	+				+0.4
3,692,576	+				+0.1
3,692,576	+				+0.6
3,692,576	+				+0.5
3,692,584	-				-0.7
3,692,584	-				+0.4
3,692,584	-				-0.2
3,692,584	-				-0.2
3,692,584	-				-0.1
3,692,617	-		GFF3649	0.13	-1.7
3,692,680	+		GFF3649	0.26	+0.4
3,692,680	+		GFF3649	0.26	+1.2
3,692,688	-		GFF3649	0.28	+0.5
3,692,688	-		GFF3649	0.28	+0.2
3,692,723	+		GFF3649	0.36	-0.9
3,692,773	+		GFF3649	0.46	-0.0
3,692,773	+		GFF3649	0.46	-2.1
3,692,781	-		GFF3649	0.48	-0.7
3,692,781	-		GFF3649	0.48	+2.8
3,692,784	+		GFF3649	0.49	+0.7
3,692,829	+		GFF3649	0.58	+0.9
3,692,829	+		GFF3649	0.58	-0.6
3,692,829	+		GFF3649	0.58	-0.6
3,692,829	+		GFF3649	0.58	+0.9
3,692,837	+		GFF3649	0.60	-0.3
3,692,837	+		GFF3649	0.60	-0.4
3,692,837	-		GFF3649	0.60	+0.1
3,692,839	+		GFF3649	0.60	-0.5
3,692,845	-		GFF3649	0.62	-0.4
3,692,872	+		GFF3649	0.68	-0.1
3,692,880	-		GFF3649	0.69	+0.4
3,692,880	-		GFF3649	0.69	-0.5
3,692,910	+		GFF3649	0.76	+0.2
3,692,915	+		GFF3649	0.77	-1.3
3,692,937	-		GFF3649	0.81	+1.3
3,692,939	-		GFF3649	0.82	+0.4
3,692,992	+				-1.3
3,693,030	-				+0.5
3,693,035	-				-1.0
3,693,058	+				+1.2
3,693,068	+				-0.4
3,693,086	+				-1.0
3,693,130	+				-1.2
3,693,149	+				+1.9
3,693,167	+				+1.1
3,693,204	+				-0.5
3,693,210	-				+0.4
3,693,247	+				+0.2
3,693,253	+				+0.0
3,693,300	+				+0.6
3,693,300	+				-0.6
3,693,303	-				+0.4
3,693,316	+		GFF3650	0.10	-0.2
3,693,316	+		GFF3650	0.10	+0.7
3,693,316	+		GFF3650	0.10	+0.4
3,693,321	+		GFF3650	0.11	+0.8
3,693,321	+		GFF3650	0.11	+0.3
3,693,324	-		GFF3650	0.11	+2.2
3,693,324	-		GFF3650	0.11	-1.6
3,693,390	-		GFF3650	0.17	+0.5
3,693,426	+		GFF3650	0.20	-0.3
3,693,426	+		GFF3650	0.20	-0.9
3,693,426	+		GFF3650	0.20	+0.3
3,693,433	+		GFF3650	0.21	-0.9
3,693,434	-		GFF3650	0.21	-0.4
3,693,450	+		GFF3650	0.22	+0.4
3,693,468	+		GFF3650	0.24	-0.2
3,693,468	+		GFF3650	0.24	-1.1
3,693,469	+		GFF3650	0.24	-1.3
3,693,469	+		GFF3650	0.24	+1.6
3,693,476	-		GFF3650	0.25	-0.5
3,693,476	-		GFF3650	0.25	+0.8
3,693,477	-		GFF3650	0.25	+1.1
3,693,517	-		GFF3650	0.28	+0.2
3,693,532	-		GFF3650	0.30	-0.4
3,693,532	-		GFF3650	0.30	-1.7
3,693,537	-		GFF3650	0.30	+0.2
3,693,585	+		GFF3650	0.35	-2.4
3,693,617	+		GFF3650	0.37	+0.4
3,693,622	+		GFF3650	0.38	+0.8
3,693,663	-		GFF3650	0.42	-1.1
3,693,683	-		GFF3650	0.43	-1.3
3,693,683	-		GFF3650	0.43	+1.0
3,693,686	-		GFF3650	0.44	-0.8
3,693,710	-		GFF3650	0.46	-0.1
3,693,717	-		GFF3650	0.46	+1.7
3,693,770	+		GFF3650	0.51	+0.4
3,693,797	+		GFF3650	0.54	-0.8
3,693,797	+		GFF3650	0.54	-0.1
3,693,797	+		GFF3650	0.54	-0.4
3,693,827	+		GFF3650	0.56	+1.6
3,693,929	+		GFF3650	0.65	+0.7
3,693,945	+		GFF3650	0.67	-0.6
3,693,945	+		GFF3650	0.67	+0.8
3,693,953	-		GFF3650	0.68	-0.8
3,693,958	-		GFF3650	0.68	-0.0
3,693,958	-		GFF3650	0.68	+0.8
3,693,958	-		GFF3650	0.68	-2.8
3,693,960	+		GFF3650	0.68	-0.6
3,693,968	-		GFF3650	0.69	+1.1
3,693,968	-		GFF3650	0.69	-0.2
3,693,980	+		GFF3650	0.70	+0.3
3,693,985	+		GFF3650	0.70	+0.7
3,693,985	+		GFF3650	0.70	-0.9
3,693,985	+		GFF3650	0.70	-0.3
3,693,985	+		GFF3650	0.70	+0.1
3,693,993	-		GFF3650	0.71	+0.7
3,693,993	-		GFF3650	0.71	-1.6
3,694,036	+		GFF3650	0.75	-1.6
3,694,042	+		GFF3650	0.76	+0.2
3,694,046	+		GFF3650	0.76	+0.9
3,694,056	+		GFF3650	0.77	+0.2
3,694,081	-		GFF3650	0.79	-0.8
3,694,119	+		GFF3650	0.82	+1.3
3,694,127	+		GFF3650	0.83	+1.4
3,694,127	+		GFF3650	0.83	-0.5
3,694,127	+		GFF3650	0.83	+0.9
3,694,127	-		GFF3650	0.83	-0.9
3,694,127	-		GFF3650	0.83	-1.1
3,694,137	+		GFF3650	0.84	+0.2
3,694,140	-		GFF3650	0.84	-0.7
3,694,142	+		GFF3650	0.84	-0.7
3,694,164	+		GFF3650	0.86	-0.7
3,694,174	+		GFF3650	0.87	-0.1
3,694,205	+				-0.0
3,694,205	+				-0.4
3,694,205	+				+0.1
3,694,213	-				+0.7
3,694,271	+				+0.2
3,694,279	-				-0.9
3,694,279	-				+1.0
3,694,281	+				+0.4
3,694,281	+				+0.9
3,694,281	+				-0.6
3,694,281	+				+1.2
3,694,281	+				+0.6
3,694,281	+				-0.4
3,694,281	+				+0.6
3,694,281	+				+0.4
3,694,281	+				+0.6
3,694,281	+				-0.3
3,694,289	-				+0.7
3,694,289	-				-0.6
3,694,289	-				-0.1
3,694,289	-				+0.6
3,694,289	-				+0.8
3,694,289	-				-0.2
3,694,289	-				-0.4
3,694,289	-				-1.3
3,694,289	-				-0.0
3,694,289	-				+0.2
3,694,289	-				-0.5
3,694,289	-				+0.3
3,694,289	-				-0.6
3,694,289	-				-0.5
3,694,289	-				+1.4
3,694,289	-				+0.2
3,694,289	-				-0.1
3,694,289	-				+0.5
3,694,289	-				+0.1
3,694,289	-				-0.4
3,694,289	-				-0.2
3,694,289	-				+0.8
3,694,289	-				-0.9
3,694,487	+				-1.7
3,694,514	+				-0.5
3,694,519	+				+0.0
3,694,521	+				-0.1
3,694,622	+				+0.2
3,694,655	+				-0.1
3,694,657	+				+0.2
3,694,657	+				+1.2
3,694,657	+				+1.2
3,694,657	+				-0.8
3,694,657	+				+0.8
3,694,663	-				+0.8
3,694,664	+				-1.8
3,694,665	-				+0.0
3,694,673	-				+0.1
3,694,677	-				-1.7
3,694,700	-				+0.2
3,694,705	-				+0.0
3,694,775	+		GFF3651	0.12	-0.7
3,694,800	+		GFF3651	0.15	+1.1
3,694,823	+		GFF3651	0.18	+1.4
3,694,823	+		GFF3651	0.18	+0.0
3,694,848	+		GFF3651	0.21	-1.0
3,694,854	-		GFF3651	0.22	-2.5
3,694,876	+		GFF3651	0.24	-0.3
3,694,921	+		GFF3651	0.30	-0.4
3,694,922	-		GFF3651	0.30	+0.8
3,694,936	-		GFF3651	0.31	-0.1
3,694,946	-		GFF3651	0.33	-0.0
3,694,946	-		GFF3651	0.33	-1.1
3,694,963	+		GFF3651	0.35	+0.8
3,694,963	+		GFF3651	0.35	+0.6
3,694,963	+		GFF3651	0.35	+0.8
3,694,963	+		GFF3651	0.35	-0.3
3,694,966	-		GFF3651	0.35	-0.1
3,694,971	-		GFF3651	0.36	-0.7
3,695,015	+		GFF3651	0.41	-0.6
3,695,053	-		GFF3651	0.45	+0.6
3,695,069	+		GFF3651	0.47	-0.6
3,695,098	+		GFF3651	0.51	-0.7
3,695,116	-		GFF3651	0.53	-0.0
3,695,141	+		GFF3651	0.56	-0.4
3,695,150	-		GFF3651	0.57	-0.3
3,695,161	+		GFF3651	0.58	-0.4
3,695,198	+		GFF3651	0.63	-1.7
3,695,206	-		GFF3651	0.64	-1.4
3,695,206	-		GFF3651	0.64	+1.2
3,695,208	+		GFF3651	0.64	-0.6
3,695,218	+		GFF3651	0.65	+1.3
3,695,268	-		GFF3651	0.71	-0.2
3,695,271	+		GFF3651	0.72	+0.8
3,695,278	+		GFF3651	0.73	-1.4
3,695,285	+		GFF3651	0.73	+2.5
3,695,293	-		GFF3651	0.74	+0.7