Strain Fitness in Sphingobium sp. HT1-2 around GFF3617

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,664,158	-		GFF3615	0.78	-1.1
3,664,229	+		GFF3615	0.81	-0.5
3,664,232	+		GFF3615	0.81	-0.6
3,664,245	-		GFF3615	0.82	+0.1
3,664,249	+		GFF3615	0.82	-0.5
3,664,250	+		GFF3615	0.82	+0.9
3,664,256	-		GFF3615	0.82	-0.8
3,664,257	-		GFF3615	0.82	-1.1
3,664,257	-		GFF3615	0.82	+0.4
3,664,257	-		GFF3615	0.82	-1.4
3,664,268	-		GFF3615	0.83	-0.0
3,664,287	+		GFF3615	0.84	-0.3
3,664,287	+		GFF3615	0.84	+0.4
3,664,290	-		GFF3615	0.84	-0.7
3,664,292	+		GFF3615	0.84	-2.2
3,664,295	-		GFF3615	0.84	+2.0
3,664,300	-		GFF3615	0.84	-0.6
3,664,302	-		GFF3615	0.84	-0.5
3,664,343	-		GFF3615	0.86	-0.6
3,664,358	+		GFF3615	0.87	+1.5
3,664,358	+		GFF3615	0.87	-0.8
3,664,382	+		GFF3615	0.88	+0.4
3,664,408	+		GFF3615	0.89	-1.8
3,664,485	-				+1.4
3,664,485	-				+0.0
3,664,492	+				+1.7
3,664,493	-				+1.5
3,664,500	-				+0.2
3,664,512	-				+1.1
3,664,514	+				+0.3
3,664,533	-				-0.4
3,664,557	+				-0.8
3,664,562	+				+0.2
3,664,565	-				+0.9
3,664,581	+				-2.2
3,664,581	+				-0.8
3,664,589	-				+0.0
3,664,589	-				-1.3
3,664,589	-				+0.1
3,664,589	-				+0.3
3,664,607	+				-1.9
3,664,612	+				-1.2
3,664,612	+				+0.2
3,664,612	-				+0.5
3,664,626	+				+0.5
3,664,626	+				-2.5
3,664,629	-				-1.1
3,664,634	+				-0.1
3,664,639	+				+0.0
3,664,644	+				+0.5
3,664,648	+				+0.7
3,664,653	+				+0.5
3,664,653	+				-0.5
3,664,653	+				-0.1
3,664,653	+				+0.4
3,664,653	+				-1.7
3,664,658	+				+0.3
3,664,661	-				-0.5
3,664,661	-				-0.5
3,664,664	+				-1.3
3,664,669	+				-0.6
3,664,677	-				-0.1
3,664,699	+				+0.9
3,664,699	+				+0.1
3,664,699	+				+0.4
3,664,699	-				-0.6
3,664,707	-				+1.2
3,664,710	-				-1.8
3,664,714	+				-1.1
3,664,715	+				+0.5
3,664,722	-				-1.7
3,664,726	-				+0.0
3,664,746	-				-2.0
3,664,788	+		GFF3616	0.13	+0.5
3,664,788	+		GFF3616	0.13	-0.2
3,664,788	+		GFF3616	0.13	+2.2
3,664,788	+		GFF3616	0.13	-1.1
3,664,788	+		GFF3616	0.13	+0.5
3,664,796	-		GFF3616	0.18	+0.9
3,664,796	-		GFF3616	0.18	+0.5
3,664,796	-		GFF3616	0.18	-0.3
3,664,798	+		GFF3616	0.20	+0.8
3,664,798	+		GFF3616	0.20	-0.1
3,664,798	+		GFF3616	0.20	-0.4
3,664,798	+		GFF3616	0.20	-0.6
3,664,798	+		GFF3616	0.20	-0.0
3,664,798	+		GFF3616	0.20	+0.5
3,664,798	+		GFF3616	0.20	+0.1
3,664,798	+		GFF3616	0.20	+0.3
3,664,798	+		GFF3616	0.20	-1.3
3,664,798	+		GFF3616	0.20	-1.2
3,664,798	+		GFF3616	0.20	+0.1
3,664,798	+		GFF3616	0.20	+1.5
3,664,798	+		GFF3616	0.20	-0.1
3,664,803	+		GFF3616	0.23	-2.9
3,664,803	+		GFF3616	0.23	-0.5
3,664,806	-		GFF3616	0.26	-1.3
3,664,806	-		GFF3616	0.26	+1.0
3,664,806	-		GFF3616	0.26	+0.9
3,664,806	-		GFF3616	0.26	-0.9
3,664,806	-		GFF3616	0.26	+0.2
3,664,806	-		GFF3616	0.26	+1.0
3,664,806	-		GFF3616	0.26	-0.1
3,664,811	-		GFF3616	0.29	+0.4
3,664,820	-		GFF3616	0.35	-0.2
3,664,830	+		GFF3616	0.43	-0.3
3,664,842	+		GFF3616	0.51	-1.7
3,664,847	+		GFF3616	0.55	-1.3
3,664,847	+		GFF3616	0.55	-0.1
3,664,847	+		GFF3616	0.55	-0.7
3,664,852	+		GFF3616	0.58	-1.5
3,664,854	+		GFF3616	0.60	-0.7
3,664,855	-		GFF3616	0.60	+0.2
3,664,860	-		GFF3616	0.64	-1.7
3,664,862	-		GFF3616	0.65	-0.3
3,664,914	+				+0.0
3,664,942	-				-1.1
3,665,029	+				-2.0
3,665,037	-				+1.5
3,665,037	-				-1.2
3,665,037	-				-0.7
3,665,043	-				-0.7
3,665,049	+				+0.3
3,665,049	-				+0.2
3,665,057	-				-0.1
3,665,061	+				+0.4
3,665,070	-				-2.3
3,665,072	+				-1.2
3,665,072	-				+0.8
3,665,072	-				-2.0
3,665,092	-				+0.4
3,665,092	-				+1.2
3,665,092	-				+0.0
3,665,094	+				-0.2
3,665,094	+				+0.0
3,665,095	-				+0.4
3,665,097	+				+0.2
3,665,098	-				-1.3
3,665,102	-				-1.1
3,665,102	-				+0.7
3,665,102	-				-0.9
3,665,102	-				+1.1
3,665,105	-				-0.2
3,665,139	+				+0.7
3,665,154	-				-1.1
3,665,158	-				-0.9
3,665,163	+				-0.2
3,665,163	+				-0.1
3,665,163	+				-2.6
3,665,163	+				+0.2
3,665,163	+				-1.2
3,665,163	+				+0.8
3,665,163	+				-0.6
3,665,163	+				-3.1
3,665,163	+				-1.2
3,665,163	+				-2.0
3,665,163	-				+0.4
3,665,166	-				+0.3
3,665,166	-				+1.0
3,665,168	+				+0.5
3,665,171	-				-0.2
3,665,171	-				+0.0
3,665,171	-				-0.7
3,665,193	-				-1.2
3,665,196	+				+0.5
3,665,203	+				-1.2
3,665,204	-				-0.9
3,665,243	-				-0.1
3,665,258	+				-1.7
3,665,258	+				+0.5
3,665,258	+				-0.4
3,665,258	+				-0.7
3,665,266	-				-0.3
3,665,266	-				-2.0
3,665,266	-				-1.6
3,665,266	-				+0.6
3,665,266	-				-1.9
3,665,270	+				-0.3
3,665,270	+				+0.9
3,665,270	+				+0.7
3,665,270	+				-0.2
3,665,271	-				-0.8
3,665,285	+		GFF3617	0.10	-0.0
3,665,285	+		GFF3617	0.10	-1.3
3,665,285	+		GFF3617	0.10	+1.4
3,665,289	-		GFF3617	0.10	-1.3
3,665,293	-		GFF3617	0.11	-1.2
3,665,293	-		GFF3617	0.11	-1.4
3,665,293	-		GFF3617	0.11	-0.9
3,665,309	+		GFF3617	0.12	-0.2
3,665,309	+		GFF3617	0.12	-0.5
3,665,319	+		GFF3617	0.12	-0.8
3,665,327	-		GFF3617	0.13	-0.9
3,665,330	-		GFF3617	0.13	-0.6
3,665,336	-		GFF3617	0.13	-0.7
3,665,351	-		GFF3617	0.14	-1.3
3,665,351	-		GFF3617	0.14	-0.6
3,665,353	-		GFF3617	0.15	+0.2
3,665,396	+		GFF3617	0.17	+1.2
3,665,404	-		GFF3617	0.18	+1.1
3,665,404	-		GFF3617	0.18	-1.2
3,665,404	-		GFF3617	0.18	+0.4
3,665,418	+		GFF3617	0.19	-0.6
3,665,420	+		GFF3617	0.19	-1.8
3,665,428	-		GFF3617	0.19	-0.6
3,665,430	+		GFF3617	0.19	-0.2
3,665,443	+		GFF3617	0.20	-1.0
3,665,461	+		GFF3617	0.21	-0.1
3,665,461	+		GFF3617	0.21	-0.1
3,665,461	+		GFF3617	0.21	-1.7
3,665,461	+		GFF3617	0.21	-0.5
3,665,461	+		GFF3617	0.21	-0.7
3,665,461	+		GFF3617	0.21	+1.5
3,665,461	+		GFF3617	0.21	-1.7
3,665,461	+		GFF3617	0.21	+0.2
3,665,461	+		GFF3617	0.21	-1.6
3,665,461	+		GFF3617	0.21	-1.3
3,665,461	+		GFF3617	0.21	+0.0
3,665,469	-		GFF3617	0.22	-0.3
3,665,469	-		GFF3617	0.22	+0.1
3,665,469	-		GFF3617	0.22	-0.9
3,665,469	-		GFF3617	0.22	+0.2
3,665,469	-		GFF3617	0.22	+0.3
3,665,469	-		GFF3617	0.22	-1.2
3,665,469	-		GFF3617	0.22	+1.5
3,665,469	-		GFF3617	0.22	+0.1
3,665,469	-		GFF3617	0.22	-1.0
3,665,469	-		GFF3617	0.22	-0.5
3,665,469	-		GFF3617	0.22	-1.0
3,665,469	-		GFF3617	0.22	-1.6
3,665,469	-		GFF3617	0.22	-0.2
3,665,469	-		GFF3617	0.22	-1.4
3,665,469	-		GFF3617	0.22	+0.1
3,665,469	-		GFF3617	0.22	+0.5
3,665,543	-		GFF3617	0.27	-0.6
3,665,572	-		GFF3617	0.28	-1.9
3,665,577	-		GFF3617	0.29	-1.1
3,665,590	+		GFF3617	0.30	-0.1
3,665,590	+		GFF3617	0.30	-0.2
3,665,590	+		GFF3617	0.30	-0.4
3,665,598	-		GFF3617	0.30	+0.1
3,665,656	+		GFF3617	0.34	-0.5
3,665,663	-		GFF3617	0.34	-1.9
3,665,664	-		GFF3617	0.34	-0.1
3,665,686	-		GFF3617	0.36	+0.4
3,665,696	+		GFF3617	0.36	-1.2
3,665,698	-		GFF3617	0.37	-0.1
3,665,703	-		GFF3617	0.37	-1.3
3,665,724	+		GFF3617	0.38	+0.2
3,665,726	+		GFF3617	0.38	-0.5
3,665,726	+		GFF3617	0.38	-1.6
3,665,726	+		GFF3617	0.38	-2.0
3,665,732	-		GFF3617	0.39	-0.2
3,665,732	-		GFF3617	0.39	-1.3
3,665,734	-		GFF3617	0.39	-0.3
3,665,734	-		GFF3617	0.39	-1.0
3,665,734	-		GFF3617	0.39	-1.7
3,665,734	-		GFF3617	0.39	+0.1
3,665,758	-		GFF3617	0.40	+0.0
3,665,804	+		GFF3617	0.43	-1.3
3,665,804	+		GFF3617	0.43	-2.1
3,665,827	+		GFF3617	0.45	+0.4
3,665,843	-		GFF3617	0.46	-1.6
3,665,869	-		GFF3617	0.47	-0.5
3,665,883	+		GFF3617	0.48	-1.1
3,665,889	-		GFF3617	0.49	+1.2
3,665,891	-		GFF3617	0.49	+0.1
3,665,891	-		GFF3617	0.49	-0.9
3,665,891	-		GFF3617	0.49	-0.5
3,665,912	+		GFF3617	0.50	-0.3
3,665,914	+		GFF3617	0.50	+0.6
3,665,941	-		GFF3617	0.52	-1.4
3,665,949	-		GFF3617	0.53	-0.3
3,665,965	-		GFF3617	0.54	+1.4
3,665,984	+		GFF3617	0.55	-0.4
3,665,984	-		GFF3617	0.55	-0.1
3,666,017	+		GFF3617	0.57	-1.6
3,666,048	-		GFF3617	0.59	-0.8
3,666,053	-		GFF3617	0.59	-0.6
3,666,107	-		GFF3617	0.63	-0.1
3,666,116	+		GFF3617	0.63	-0.0
3,666,116	+		GFF3617	0.63	+0.8
3,666,135	-		GFF3617	0.64	+1.4
3,666,154	+		GFF3617	0.66	-1.2
3,666,155	-		GFF3617	0.66	-2.5
3,666,157	-		GFF3617	0.66	+0.4
3,666,185	+		GFF3617	0.68	-2.3
3,666,185	+		GFF3617	0.68	+0.4
3,666,193	-		GFF3617	0.68	-1.2
3,666,202	+		GFF3617	0.69	-0.2
3,666,202	+		GFF3617	0.69	+0.9
3,666,202	+		GFF3617	0.69	-0.6
3,666,202	+		GFF3617	0.69	-0.5
3,666,202	+		GFF3617	0.69	+0.3
3,666,202	+		GFF3617	0.69	+0.2
3,666,210	-		GFF3617	0.69	+0.5
3,666,210	-		GFF3617	0.69	-0.7
3,666,212	+		GFF3617	0.69	+0.4
3,666,222	+		GFF3617	0.70	-1.9
3,666,267	+		GFF3617	0.73	+1.0
3,666,275	-		GFF3617	0.73	-1.2
3,666,356	-		GFF3617	0.78	-0.0
3,666,369	+		GFF3617	0.79	-2.7
3,666,369	+		GFF3617	0.79	+1.6
3,666,370	-		GFF3617	0.79	+0.7
3,666,377	-		GFF3617	0.80	-1.1
3,666,377	-		GFF3617	0.80	-1.5
3,666,377	-		GFF3617	0.80	-2.0
3,666,377	-		GFF3617	0.80	-0.4
3,666,381	+		GFF3617	0.80	-1.0
3,666,381	+		GFF3617	0.80	-1.2
3,666,381	+		GFF3617	0.80	+0.7
3,666,387	-		GFF3617	0.80	-2.3
3,666,389	-		GFF3617	0.81	+0.7
3,666,412	+		GFF3617	0.82	-0.2
3,666,430	+		GFF3617	0.83	-1.3
3,666,430	+		GFF3617	0.83	-1.4
3,666,430	+		GFF3617	0.83	-0.0
3,666,430	+		GFF3617	0.83	+0.6
3,666,430	+		GFF3617	0.83	+0.5
3,666,435	+		GFF3617	0.83	+0.2
3,666,435	+		GFF3617	0.83	-0.7
3,666,435	+		GFF3617	0.83	-2.0
3,666,435	+		GFF3617	0.83	+0.1
3,666,438	-		GFF3617	0.84	-0.3
3,666,438	-		GFF3617	0.84	+0.1
3,666,443	-		GFF3617	0.84	-1.0
3,666,443	-		GFF3617	0.84	-1.2
3,666,443	-		GFF3617	0.84	-0.3
3,666,443	-		GFF3617	0.84	-1.9
3,666,443	-		GFF3617	0.84	-1.2
3,666,463	+		GFF3617	0.85	+0.2
3,666,463	+		GFF3617	0.85	+0.5
3,666,463	+		GFF3617	0.85	-1.1
3,666,466	+		GFF3617	0.85	-0.1
3,666,468	+		GFF3617	0.86	-1.1
3,666,471	-		GFF3617	0.86	+1.6
3,666,476	-		GFF3617	0.86	-0.3
3,666,476	-		GFF3617	0.86	-0.9
3,666,476	-		GFF3617	0.86	+0.8
3,666,476	-		GFF3617	0.86	-1.3
3,666,476	-		GFF3617	0.86	-1.2
3,666,476	-		GFF3617	0.86	-1.3
3,666,489	+		GFF3617	0.87	+0.7
3,666,489	+		GFF3617	0.87	-0.9
3,666,489	+		GFF3617	0.87	+1.2
3,666,492	-		GFF3617	0.87	+0.0
3,666,497	-		GFF3617	0.87	+0.2
3,666,497	-		GFF3617	0.87	-1.6
3,666,534	+		GFF3617	0.90	+0.3
3,666,547	+				-1.2
3,666,547	+				-0.4
3,666,548	+				+1.1
3,666,548	+				-2.6
3,666,555	-				-1.2
3,666,556	-				-0.6
3,666,575	+				-0.9
3,666,575	-				-0.9
3,666,577	-				+0.2
3,666,577	-				+0.5
3,666,585	-				-0.3
3,666,612	+				+0.5
3,666,622	+				+0.6
3,666,627	+				+1.4
3,666,627	+				+0.8
3,666,627	+				-0.9
3,666,627	+				-1.5
3,666,627	+				-1.5
3,666,627	+				-0.5
3,666,627	+				+0.4
3,666,627	+				-1.7
3,666,635	-				-0.1
3,666,635	-				-0.3
3,666,635	-				+0.4
3,666,635	-				-1.5
3,666,635	-				-0.2
3,666,647	+				+1.1
3,666,658	-				-1.4
3,666,698	+				-2.0
3,666,703	+				+0.2
3,666,706	-				+0.5
3,666,727	+		GFF3618	0.13	-0.3
3,666,727	+		GFF3618	0.13	+0.1
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3,666,964	-				-0.8
3,666,985	+				+0.1
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3,666,993	-				+1.4
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3,667,245	+				-1.1
3,667,245	+				+0.9
3,667,245	+				-0.8
3,667,245	+				+0.4
3,667,245	+				-0.3
3,667,245	+				-1.0
3,667,245	+				-0.2
3,667,245	+				-1.8
3,667,245	+				+1.1
3,667,245	+				+0.2
3,667,245	+				-1.1
3,667,245	+				+0.7
3,667,245	+				-0.6
3,667,247	+				+1.1
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3,667,253	-				-0.1
3,667,253	-				-0.2
3,667,253	-				-1.9
3,667,253	-				+0.3
3,667,253	-				-1.2
3,667,253	-				-0.5
3,667,253	-				-0.1
3,667,253	-				+0.4
3,667,253	-				+0.4
3,667,253	-				+0.3
3,667,253	-				+0.1
3,667,253	-				+0.7
3,667,253	-				-1.2
3,667,253	-				-0.2
3,667,253	-				+0.2
3,667,253	-				-2.5
3,667,253	-				-1.1
3,667,253	-				-2.7
3,667,253	-				+0.0
3,667,253	-				-0.3
3,667,253	-				-0.2
3,667,253	-				-1.3
3,667,253	-				-0.9
3,667,253	-				-0.5
3,667,253	-				-1.1
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3,667,272	+				-0.4
3,667,288	+				-0.5
3,667,295	+				+0.5
3,667,295	+				+1.4
3,667,296	-				+1.2
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3,667,321	+				-0.3
3,667,321	+				-0.2
3,667,329	-				-1.6
3,667,337	-				-1.3
3,667,337	-				+0.4
3,667,337	-				-0.5
3,667,338	+				-0.5
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3,667,338	+				-1.8
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