Strain Fitness in Sphingobium sp. HT1-2 around GFF3572

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,621,524	-		GFF3571	0.88	-0.1
3,621,537	+		GFF3571	0.88	-0.9
3,621,544	-		GFF3571	0.88	-1.0
3,621,545	-		GFF3571	0.88	-1.6
3,621,545	-		GFF3571	0.88	-0.7
3,621,545	-		GFF3571	0.88	+0.2
3,621,545	-		GFF3571	0.88	-0.5
3,621,545	-		GFF3571	0.88	-0.0
3,621,592	+		GFF3571	0.89	+0.0
3,621,595	-		GFF3571	0.89	-0.5
3,621,600	-		GFF3571	0.89	-0.6
3,621,603	-		GFF3571	0.89	-1.2
3,621,610	-		GFF3571	0.89	-0.3
3,621,612	-		GFF3571	0.89	-1.5
3,621,631	-		GFF3571	0.89	+0.7
3,621,634	-		GFF3571	0.89	-1.4
3,621,649	-		GFF3571	0.89	+0.6
3,621,649	-		GFF3571	0.89	-0.4
3,621,649	-		GFF3571	0.89	-0.6
3,621,650	+		GFF3571	0.89	+0.8
3,621,650	+		GFF3571	0.89	-2.0
3,621,658	-		GFF3571	0.89	+0.4
3,621,660	+		GFF3571	0.89	+0.0
3,621,672	+		GFF3571	0.90	-1.2
3,621,688	+		GFF3571	0.90	+0.8
3,621,693	+		GFF3571	0.90	+0.1
3,621,698	-		GFF3571	0.90	-0.4
3,621,702	+		GFF3571	0.90	+0.0
3,621,704	+		GFF3571	0.90	-1.5
3,621,704	+		GFF3571	0.90	+0.8
3,621,712	-				+0.2
3,621,712	-				+1.1
3,621,712	-				+0.5
3,621,712	-				-0.4
3,621,718	+				-0.6
3,621,722	-				+0.6
3,621,733	+				+1.1
3,621,743	-				-1.7
3,621,753	+				+0.0
3,621,753	+				+0.0
3,621,753	+				-1.3
3,621,753	+				-0.3
3,621,753	+				-0.6
3,621,753	+				+1.4
3,621,756	-				-1.2
3,621,761	-				-0.9
3,621,761	-				+0.3
3,621,761	-				-0.7
3,621,761	-				+0.3
3,621,761	-				+0.3
3,621,761	-				-0.0
3,621,761	-				+0.7
3,621,784	-				+1.4
3,621,788	+				-0.6
3,621,788	+				-0.8
3,621,788	+				-0.5
3,621,796	-				-1.4
3,621,796	-				-0.2
3,621,796	-				-1.4
3,621,796	-				+0.4
3,621,796	-				-0.5
3,621,798	+				-2.0
3,621,798	-				+0.6
3,621,798	-				-1.8
3,621,843	+				+0.7
3,621,843	+				+0.5
3,621,843	+				-0.0
3,621,843	+				-0.1
3,621,843	+				-0.3
3,621,843	+				+0.0
3,621,843	+				+0.1
3,621,843	+				-1.1
3,621,851	-				-0.6
3,621,851	-				-1.2
3,621,851	-				-1.6
3,621,851	-				-1.2
3,621,863	+				+0.5
3,621,866	+				-0.5
3,621,871	+				-0.5
3,621,871	+				-1.4
3,621,871	+				-0.1
3,621,871	-				-0.0
3,621,871	-				-0.2
3,621,873	+				-0.7
3,621,873	+				-1.2
3,621,879	+				-0.3
3,621,879	-				-1.3
3,621,881	-				-1.2
3,621,881	-				-1.5
3,621,897	-				-0.4
3,621,907	+				+0.4
3,621,968	+				-1.6
3,621,968	+				+0.3
3,621,976	-				+2.0
3,621,976	-				-0.2
3,621,976	-				+0.6
3,621,976	-				+0.6
3,621,982	+				-0.5
3,621,982	+				+0.4
3,621,982	+				-1.3
3,621,985	+				-0.5
3,621,985	+				-0.6
3,621,985	+				-1.2
3,621,985	+				+0.5
3,621,985	+				-1.1
3,621,993	-				-1.5
3,621,993	-				-0.6
3,622,004	+				-2.2
3,622,004	+				-0.6
3,622,004	+				-2.1
3,622,004	+				-1.0
3,622,005	+				+0.1
3,622,005	+				+0.5
3,622,005	+				-0.4
3,622,012	-				+0.9
3,622,012	-				-0.2
3,622,012	-				+0.0
3,622,012	-				-1.1
3,622,012	-				-0.8
3,622,013	+				+0.7
3,622,013	-				+0.4
3,622,019	-				-2.2
3,622,035	-				-0.7
3,622,042	+				-0.1
3,622,047	+				-0.3
3,622,047	+				+0.1
3,622,047	+				+0.2
3,622,047	+				-0.2
3,622,047	+				-1.6
3,622,052	+				-1.0
3,622,058	+				-0.8
3,622,063	+				-0.8
3,622,066	-				-0.3
3,622,066	-				+1.0
3,622,066	-				-1.4
3,622,071	-				-0.0
3,622,071	-				-1.3
3,622,075	+				+0.8
3,622,075	+				-1.8
3,622,093	-				+0.6
3,622,107	+				+0.0
3,622,113	+				-1.5
3,622,113	+				+1.1
3,622,115	-				+0.6
3,622,117	+				-0.8
3,622,125	-				-1.5
3,622,127	+				-0.2
3,622,144	-				-1.8
3,622,155	+				+0.4
3,622,156	-				-1.3
3,622,158	+				-0.2
3,622,163	+				-1.9
3,622,172	+				-1.2
3,622,174	+				+0.7
3,622,174	+				-0.2
3,622,174	+				+0.5
3,622,180	-				-0.1
3,622,182	-				-0.8
3,622,194	-				+0.6
3,622,211	+				-1.1
3,622,222	-				-0.0
3,622,229	+				-0.2
3,622,249	+				-0.7
3,622,249	+				+0.8
3,622,249	+				+0.4
3,622,249	+				-0.5
3,622,249	+				-0.7
3,622,252	-				-0.4
3,622,254	+				-0.8
3,622,256	+				-1.8
3,622,256	+				+0.3
3,622,257	+				-0.3
3,622,257	+				-1.3
3,622,257	-				-0.6
3,622,257	-				-1.4
3,622,272	+				-1.2
3,622,272	+				-1.5
3,622,272	+				-1.7
3,622,272	+				-0.3
3,622,272	+				-0.3
3,622,272	+				+0.2
3,622,272	+				+0.7
3,622,272	+				+0.5
3,622,272	+				-0.9
3,622,272	+				-1.1
3,622,272	+				+0.3
3,622,272	+				+0.9
3,622,272	+				+1.6
3,622,272	+				+0.4
3,622,272	+				-2.5
3,622,272	+				+0.3
3,622,272	+				+0.5
3,622,272	+				-0.5
3,622,272	+				+0.7
3,622,272	+				+0.9
3,622,272	+				-0.2
3,622,272	+				+0.1
3,622,272	+				-0.2
3,622,272	+				+0.6
3,622,272	+				+1.4
3,622,272	+				-0.7
3,622,272	+				+0.3
3,622,272	+				-0.9
3,622,272	+				+0.4
3,622,272	+				-1.2
3,622,272	+				-0.1
3,622,272	+				+1.4
3,622,272	+				-0.8
3,622,274	+				+0.4
3,622,277	+				-0.5
3,622,280	+				-0.2
3,622,280	-				-0.3
3,622,280	-				-0.2
3,622,280	-				-1.2
3,622,280	-				-1.3
3,622,280	-				-1.7
3,622,280	-				-1.6
3,622,280	-				-0.4
3,622,280	-				+0.3
3,622,280	-				-1.2
3,622,282	+				-0.6
3,622,282	+				-1.4
3,622,282	+				-0.5
3,622,282	+				+0.7
3,622,282	+				-0.4
3,622,282	+				-0.5
3,622,282	-				-0.9
3,622,288	-				+0.1
3,622,288	-				-1.0
3,622,297	+				-1.2
3,622,307	+				-0.3
3,622,307	+				-0.8
3,622,307	+				+0.8
3,622,307	+				-0.6
3,622,307	+				+0.3
3,622,307	+				+0.2
3,622,307	+				-0.1
3,622,307	+				-0.2
3,622,307	+				-2.3
3,622,307	+				-0.7
3,622,307	+				-0.2
3,622,312	+				-1.3
3,622,312	+				-0.7
3,622,315	-				-1.7
3,622,315	-				-0.2
3,622,328	+				-2.0
3,622,328	+				+0.6
3,622,346	+				-1.7
3,622,346	+				+0.1
3,622,346	+				+1.1
3,622,351	+				-1.0
3,622,354	-				-1.8
3,622,364	-				-0.6
3,622,376	+				-0.3
3,622,378	+				-0.2
3,622,392	+				-0.6
3,622,393	+				-0.0
3,622,408	+				-0.5
3,622,408	+				+0.5
3,622,408	+				+0.7
3,622,408	+				-0.3
3,622,408	+				-1.0
3,622,408	+				-0.8
3,622,416	-				+1.3
3,622,530	+				-1.4
3,622,532	-				-1.5
3,622,538	-		GFF3572	0.12	+0.0
3,622,538	-		GFF3572	0.12	-1.0
3,622,538	-		GFF3572	0.12	-1.3
3,622,538	-		GFF3572	0.12	-2.1
3,622,538	-		GFF3572	0.12	-0.7
3,622,560	+		GFF3572	0.21	-0.9
3,622,560	+		GFF3572	0.21	-0.5
3,622,560	+		GFF3572	0.21	-1.3
3,622,568	-		GFF3572	0.24	+0.3
3,622,568	-		GFF3572	0.24	-1.7
3,622,616	+		GFF3572	0.43	-1.4
3,622,616	+		GFF3572	0.43	-1.7
3,622,634	+		GFF3572	0.50	-1.1
3,622,642	+		GFF3572	0.53	-0.3
3,622,642	+		GFF3572	0.53	+1.0
3,622,642	+		GFF3572	0.53	+0.4
3,622,642	-		GFF3572	0.53	-1.4
3,622,652	+		GFF3572	0.57	+0.1
3,622,657	+		GFF3572	0.59	-0.3
3,622,660	-		GFF3572	0.60	-0.0
3,622,714	+		GFF3572	0.82	+0.5
3,622,732	+		GFF3572	0.89	-0.1
3,622,740	-				-1.6
3,622,742	+				+0.2
3,622,752	-				-1.3
3,622,754	+				+0.7
3,622,762	-				-1.9
3,622,800	-				-1.2
3,622,858	+				-0.6
3,622,859	-				+1.4
3,622,906	+		GFF3573	0.29	-1.2
3,622,914	-		GFF3573	0.34	-1.2
3,622,925	+		GFF3573	0.40	+0.5
3,622,930	-		GFF3573	0.43	+0.5
3,622,933	-		GFF3573	0.44	-0.1
3,622,936	-		GFF3573	0.46	-1.4
3,622,936	-		GFF3573	0.46	-0.0
3,622,937	+		GFF3573	0.47	-1.2
3,622,937	+		GFF3573	0.47	-1.2
3,622,947	-		GFF3573	0.52	-0.5
3,622,972	+		GFF3573	0.66	-1.6
3,622,984	+		GFF3573	0.73	-1.8
3,622,984	+		GFF3573	0.73	-1.3
3,622,984	+		GFF3573	0.73	+0.4
3,622,988	+		GFF3573	0.75	-2.0
3,622,990	+		GFF3573	0.76	-2.6
3,622,991	-		GFF3573	0.77	-0.2
3,622,992	-		GFF3573	0.77	+0.0
3,622,998	-		GFF3573	0.81	-0.2
3,623,000	+		GFF3573	0.82	-2.3
3,623,000	-		GFF3573	0.82	-0.3
3,623,009	+		GFF3573	0.87	-0.6
3,623,009	+		GFF3573	0.87	+0.2
3,623,019	+				+0.3
3,623,019	+				-1.8
3,623,019	+				-1.6
3,623,027	-				-1.2
3,623,027	-				+0.1
3,623,029	+				+0.7
3,623,029	+				-0.9
3,623,032	-				-0.2
3,623,043	+				-1.0
3,623,043	+				+1.1
3,623,053	+		GFF3574	0.11	+1.1
3,623,076	+		GFF3574	0.23	+0.3
3,623,088	-		GFF3574	0.30	-1.8
3,623,099	+		GFF3574	0.35	-1.7
3,623,099	+		GFF3574	0.35	+0.7
3,623,104	+		GFF3574	0.38	-1.6
3,623,107	-		GFF3574	0.40	+0.0
3,623,109	+		GFF3574	0.41	-1.6
3,623,111	-		GFF3574	0.42	-2.4
3,623,115	+		GFF3574	0.44	-0.3
3,623,142	+		GFF3574	0.58	+0.5
3,623,144	+		GFF3574	0.59	+1.0
3,623,144	+		GFF3574	0.59	+0.2
3,623,147	+		GFF3574	0.61	-0.9
3,623,152	+		GFF3574	0.63	-0.0
3,623,152	+		GFF3574	0.63	+0.7
3,623,152	-		GFF3574	0.63	+0.8
3,623,152	-		GFF3574	0.63	-1.4
3,623,152	-		GFF3574	0.63	-0.8
3,623,152	-		GFF3574	0.63	-1.1
3,623,160	-		GFF3574	0.68	-1.6
3,623,160	-		GFF3574	0.68	-1.4
3,623,162	-		GFF3574	0.69	+0.6
3,623,172	+		GFF3574	0.74	-1.7
3,623,175	-		GFF3574	0.76	-2.4
3,623,177	+		GFF3574	0.77	+0.0
3,623,177	+		GFF3574	0.77	+0.2
3,623,177	+		GFF3574	0.77	+0.1
3,623,177	+		GFF3574	0.77	+0.4
3,623,177	+		GFF3574	0.77	+0.8
3,623,177	+		GFF3574	0.77	-0.7
3,623,185	-		GFF3574	0.81	-0.5
3,623,185	-		GFF3574	0.81	-1.0
3,623,185	-		GFF3574	0.81	+0.7
3,623,185	-		GFF3574	0.81	+0.5
3,623,193	+		GFF3574	0.85	-0.2
3,623,241	+				-1.5
3,623,336	+				-0.3
3,623,342	-				-1.5
3,623,344	-				-0.6
3,623,366	-		GFF3575	0.11	-1.1
3,623,393	+		GFF3575	0.15	-0.5
3,623,393	-		GFF3575	0.15	+0.3
3,623,408	-		GFF3575	0.17	+1.0
3,623,410	-		GFF3575	0.17	-0.0
3,623,421	+		GFF3575	0.18	-0.5
3,623,428	+		GFF3575	0.19	+0.4
3,623,429	+		GFF3575	0.19	-2.1
3,623,429	+		GFF3575	0.19	-1.1
3,623,429	+		GFF3575	0.19	-1.2
3,623,429	+		GFF3575	0.19	-2.3
3,623,429	+		GFF3575	0.19	-1.2
3,623,429	-		GFF3575	0.19	+0.9
3,623,429	-		GFF3575	0.19	+0.5
3,623,429	-		GFF3575	0.19	-0.1
3,623,429	-		GFF3575	0.19	-1.3
3,623,429	-		GFF3575	0.19	+0.7
3,623,437	-		GFF3575	0.20	-0.3
3,623,437	-		GFF3575	0.20	-1.0
3,623,437	-		GFF3575	0.20	-0.0
3,623,437	-		GFF3575	0.20	-0.6
3,623,437	-		GFF3575	0.20	-2.2
3,623,437	-		GFF3575	0.20	-2.2
3,623,437	-		GFF3575	0.20	-0.3
3,623,445	-		GFF3575	0.21	-0.1
3,623,445	-		GFF3575	0.21	-0.4
3,623,461	-		GFF3575	0.23	+0.1
3,623,464	+		GFF3575	0.23	-1.5
3,623,472	-		GFF3575	0.24	-1.2
3,623,472	-		GFF3575	0.24	-0.1
3,623,472	-		GFF3575	0.24	-0.0
3,623,472	-		GFF3575	0.24	-0.4
3,623,472	-		GFF3575	0.24	+1.5
3,623,472	-		GFF3575	0.24	-0.4
3,623,472	-		GFF3575	0.24	-0.2
3,623,472	-		GFF3575	0.24	-0.4
3,623,472	-		GFF3575	0.24	+0.1
3,623,535	+		GFF3575	0.32	-0.0
3,623,535	+		GFF3575	0.32	-1.0
3,623,538	+		GFF3575	0.33	-1.2
3,623,543	-		GFF3575	0.33	-0.6
3,623,543	-		GFF3575	0.33	-0.2
3,623,543	-		GFF3575	0.33	-0.8
3,623,543	-		GFF3575	0.33	-0.0
3,623,556	-		GFF3575	0.35	-0.4
3,623,556	-		GFF3575	0.35	+0.9
3,623,556	-		GFF3575	0.35	-0.7
3,623,566	-		GFF3575	0.36	-0.0
3,623,566	-		GFF3575	0.36	+0.2
3,623,566	-		GFF3575	0.36	-0.5
3,623,576	-		GFF3575	0.37	-1.0
3,623,599	+		GFF3575	0.40	-0.8
3,623,600	-		GFF3575	0.40	-0.4
3,623,600	-		GFF3575	0.40	+0.0
3,623,602	-		GFF3575	0.40	-1.5
3,623,602	-		GFF3575	0.40	-0.4
3,623,607	+		GFF3575	0.41	+0.5
3,623,607	-		GFF3575	0.41	-0.6
3,623,617	-		GFF3575	0.42	-0.3
3,623,647	+		GFF3575	0.46	-2.0
3,623,647	+		GFF3575	0.46	+1.7
3,623,650	-		GFF3575	0.46	-0.0
3,623,650	-		GFF3575	0.46	-0.5
3,623,655	-		GFF3575	0.47	-1.6
3,623,655	-		GFF3575	0.47	+0.3
3,623,667	-		GFF3575	0.48	+0.6
3,623,725	-		GFF3575	0.56	+0.0
3,623,753	-		GFF3575	0.59	+0.9
3,623,755	+		GFF3575	0.59	-2.3