Strain Fitness in Sphingobium sp. HT1-2 around GFF3538

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,585,429	+				-0.6
3,585,437	-				-1.0
3,585,437	-				-2.3
3,585,437	-				-1.6
3,585,507	+				-1.3
3,585,653	+		GFF3537	0.22	-1.6
3,585,680	+		GFF3537	0.24	-3.1
3,585,688	-		GFF3537	0.25	-2.5
3,585,712	-		GFF3537	0.27	-1.5
3,585,712	-		GFF3537	0.27	-2.5
3,585,776	-		GFF3537	0.34	-1.5
3,585,806	+		GFF3537	0.37	-4.3
3,585,806	+		GFF3537	0.37	-2.0
3,585,814	-		GFF3537	0.38	-2.5
3,585,814	-		GFF3537	0.38	-3.1
3,585,895	+		GFF3537	0.46	-2.5
3,585,952	-		GFF3537	0.52	-2.7
3,585,952	-		GFF3537	0.52	-1.0
3,585,960	-		GFF3537	0.52	-2.4
3,585,962	-		GFF3537	0.53	-1.8
3,586,001	-		GFF3537	0.57	-1.7
3,586,004	-		GFF3537	0.57	-0.9
3,586,017	-		GFF3537	0.58	-2.0
3,586,021	+		GFF3537	0.59	-2.8
3,586,021	+		GFF3537	0.59	-3.0
3,586,021	+		GFF3537	0.59	-0.9
3,586,021	+		GFF3537	0.59	-3.1
3,586,026	+		GFF3537	0.59	-1.5
3,586,029	-		GFF3537	0.59	-2.2
3,586,029	-		GFF3537	0.59	+0.1
3,586,029	-		GFF3537	0.59	-1.5
3,586,029	-		GFF3537	0.59	-2.9
3,586,029	-		GFF3537	0.59	-3.1
3,586,050	+		GFF3537	0.62	-2.3
3,586,058	-		GFF3537	0.62	-1.4
3,586,058	-		GFF3537	0.62	-2.5
3,586,091	+		GFF3537	0.66	-3.0
3,586,098	-		GFF3537	0.66	-2.7
3,586,110	-		GFF3537	0.68	-1.5
3,586,141	-		GFF3537	0.71	-2.3
3,586,206	-		GFF3537	0.77	-3.0
3,586,260	+		GFF3537	0.83	-2.3
3,586,268	-		GFF3537	0.83	-1.2
3,586,268	-		GFF3537	0.83	-2.5
3,586,294	+		GFF3537	0.86	-2.5
3,586,294	+		GFF3537	0.86	-1.8
3,586,294	+		GFF3537	0.86	-0.6
3,586,307	-		GFF3537	0.87	-0.6
3,586,320	+		GFF3537	0.89	-4.3
3,586,355	+				-2.6
3,586,363	-				-0.5
3,586,363	-				-2.3
3,586,363	-				-3.7
3,586,363	-				-2.8
3,586,432	+				-2.5
3,586,440	-				-0.6
3,586,463	+				-1.2
3,586,481	+				-1.5
3,586,481	+				-2.2
3,586,488	+				-3.3
3,586,517	-		GFF3538	0.11	-1.7
3,586,535	-		GFF3538	0.14	-2.0
3,586,550	+		GFF3538	0.15	-2.1
3,586,557	+		GFF3538	0.16	-2.1
3,586,604	+		GFF3538	0.22	-1.4
3,586,609	+		GFF3538	0.23	-4.4
3,586,617	-		GFF3538	0.24	-3.8
3,586,626	+		GFF3538	0.25	-1.8
3,586,626	+		GFF3538	0.25	-1.5
3,586,634	-		GFF3538	0.26	-2.1
3,586,634	-		GFF3538	0.26	-2.0
3,586,639	-		GFF3538	0.27	-2.4
3,586,667	+		GFF3538	0.30	-2.6
3,586,670	-		GFF3538	0.31	-2.0
3,586,675	-		GFF3538	0.31	-2.8
3,586,701	+		GFF3538	0.34	-1.7
3,586,711	-		GFF3538	0.36	-2.3
3,586,718	-		GFF3538	0.37	-1.9
3,586,845	+		GFF3538	0.53	-1.8
3,586,845	+		GFF3538	0.53	-1.2
3,586,845	+		GFF3538	0.53	-2.8
3,586,845	+		GFF3538	0.53	-2.1
3,586,848	-		GFF3538	0.53	-1.8
3,586,853	-		GFF3538	0.54	-1.5
3,586,853	-		GFF3538	0.54	+0.1
3,586,889	+		GFF3538	0.58	-0.4
3,586,896	-		GFF3538	0.59	-1.8
3,586,903	+		GFF3538	0.60	-4.3
3,586,913	+		GFF3538	0.61	-1.9
3,586,913	+		GFF3538	0.61	-2.8
3,586,913	+		GFF3538	0.61	-2.0
3,586,921	-		GFF3538	0.62	-1.0
3,586,921	-		GFF3538	0.62	-2.4
3,586,922	-		GFF3538	0.62	-2.7
3,586,943	-		GFF3538	0.65	-2.5
3,586,943	-		GFF3538	0.65	-3.0
3,586,946	+		GFF3538	0.65	-0.8
3,586,954	-		GFF3538	0.66	-2.3
3,586,980	+		GFF3538	0.70	-2.8
3,586,980	+		GFF3538	0.70	-1.8
3,586,999	+		GFF3538	0.72	-1.5
3,587,007	-		GFF3538	0.73	-1.8
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-0.9
3,587,038	+		GFF3538	0.77	-2.0
3,587,038	+		GFF3538	0.77	-1.2
3,587,038	+		GFF3538	0.77	-2.2
3,587,038	+		GFF3538	0.77	-3.2
3,587,038	+		GFF3538	0.77	-0.3
3,587,038	+		GFF3538	0.77	-1.3
3,587,038	+		GFF3538	0.77	+0.2
3,587,038	+		GFF3538	0.77	-4.2
3,587,038	+		GFF3538	0.77	-2.3
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-2.6
3,587,038	+		GFF3538	0.77	-2.2
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-2.0
3,587,043	+		GFF3538	0.78	-0.8
3,587,046	-		GFF3538	0.78	-0.6
3,587,046	-		GFF3538	0.78	-2.5
3,587,046	-		GFF3538	0.78	-3.0
3,587,046	-		GFF3538	0.78	-3.1
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-0.9
3,587,046	-		GFF3538	0.78	-1.5
3,587,046	-		GFF3538	0.78	-3.1
3,587,046	-		GFF3538	0.78	-2.0
3,587,046	-		GFF3538	0.78	-1.9
3,587,046	-		GFF3538	0.78	-1.3
3,587,046	-		GFF3538	0.78	-2.1
3,587,046	-		GFF3538	0.78	-1.3
3,587,046	-		GFF3538	0.78	-3.3
3,587,046	-		GFF3538	0.78	-2.5
3,587,046	-		GFF3538	0.78	-1.8
3,587,046	-		GFF3538	0.78	-1.3
3,587,066	+		GFF3538	0.81	-1.5
3,587,133	+		GFF3538	0.89	-2.5
3,587,143	+				-1.5
3,587,163	-				-1.3
3,587,174	+				-1.5
3,587,201	-				-1.8
3,587,202	+				+0.7
3,587,212	-				-2.3
3,587,220	-				+1.5
3,587,223	+				+0.6
3,587,223	+				-0.1
3,587,231	-				-0.3
3,587,231	-				-0.2
3,587,286	-		GFF3539	0.14	-0.3
3,587,286	-		GFF3539	0.14	+0.3
3,587,286	-		GFF3539	0.14	+0.8
3,587,322	-		GFF3539	0.22	-0.2
3,587,359	+		GFF3539	0.29	+0.5
3,587,421	+		GFF3539	0.42	-0.8
3,587,421	+		GFF3539	0.42	+0.4
3,587,427	+		GFF3539	0.43	-2.0
3,587,429	-		GFF3539	0.44	+0.5
3,587,437	+		GFF3539	0.45	-1.7
3,587,453	+		GFF3539	0.49	-0.3
3,587,469	+		GFF3539	0.52	-0.2
3,587,475	+		GFF3539	0.53	+0.5
3,587,475	+		GFF3539	0.53	+1.0
3,587,475	+		GFF3539	0.53	-0.5
3,587,475	+		GFF3539	0.53	-0.3
3,587,477	-		GFF3539	0.54	-1.4
3,587,481	+		GFF3539	0.55	-2.0
3,587,498	-		GFF3539	0.58	-0.6
3,587,523	+		GFF3539	0.63	-2.4
3,587,528	+		GFF3539	0.64	+0.8
3,587,531	-		GFF3539	0.65	+0.4
3,587,537	+		GFF3539	0.66	-0.7
3,587,541	-		GFF3539	0.67	-0.7
3,587,596	+		GFF3539	0.78	-1.3
3,587,616	-		GFF3539	0.82	+0.7
3,587,688	+				+0.5
3,587,691	-				-0.3
3,587,702	+				-0.8
3,587,735	+				+1.1
3,587,768	-				-2.9
3,587,806	+				-0.9
3,587,811	+				-1.7
3,587,814	-				-1.5
3,587,830	-		GFF3540	0.11	+0.3
3,587,832	+		GFF3540	0.11	-0.0
3,587,832	+		GFF3540	0.11	+1.6
3,587,832	+		GFF3540	0.11	+0.2
3,587,832	+		GFF3540	0.11	-0.0
3,587,832	+		GFF3540	0.11	-0.3
3,587,832	+		GFF3540	0.11	+0.5
3,587,832	+		GFF3540	0.11	+0.8
3,587,840	-		GFF3540	0.12	+0.1
3,587,840	-		GFF3540	0.12	+1.7
3,587,840	-		GFF3540	0.12	-1.1
3,587,840	-		GFF3540	0.12	+1.1
3,587,840	-		GFF3540	0.12	+0.6
3,587,840	-		GFF3540	0.12	+0.8
3,587,840	-		GFF3540	0.12	-0.0
3,587,840	-		GFF3540	0.12	-0.3
3,587,840	-		GFF3540	0.12	-0.1
3,587,840	-		GFF3540	0.12	-0.2
3,587,840	-		GFF3540	0.12	-0.5
3,587,840	-		GFF3540	0.12	+0.7
3,587,840	-		GFF3540	0.12	-1.0
3,587,840	-		GFF3540	0.12	+0.4
3,587,840	-		GFF3540	0.12	-0.8
3,587,854	+		GFF3540	0.13	+1.1
3,587,859	+		GFF3540	0.14	-0.1
3,587,867	-		GFF3540	0.14	+0.4
3,587,867	-		GFF3540	0.14	+0.1
3,587,867	-		GFF3540	0.14	+1.1
3,587,867	-		GFF3540	0.14	+0.3
3,587,867	-		GFF3540	0.14	+0.6
3,587,876	+		GFF3540	0.15	+0.7
3,587,900	-		GFF3540	0.17	-0.5
3,587,916	-		GFF3540	0.18	+1.9
3,587,953	+		GFF3540	0.22	+0.1
3,588,121	+		GFF3540	0.36	+0.8
3,588,121	+		GFF3540	0.36	-1.5
3,588,126	+		GFF3540	0.36	-1.4
3,588,129	-		GFF3540	0.36	-0.9
3,588,129	-		GFF3540	0.36	-0.0
3,588,129	-		GFF3540	0.36	-0.0
3,588,129	-		GFF3540	0.36	-1.6
3,588,149	+		GFF3540	0.38	-0.6
3,588,152	-		GFF3540	0.38	-0.3
3,588,157	-		GFF3540	0.39	+0.2
3,588,166	-		GFF3540	0.39	+1.7
3,588,192	-		GFF3540	0.42	+0.1
3,588,197	-		GFF3540	0.42	+0.7
3,588,201	-		GFF3540	0.42	-1.7
3,588,211	-		GFF3540	0.43	-0.1