Strain Fitness in Sphingobium sp. HT1-2 around GFF3459

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,498,338	+		GFF3458	0.18	-2.9
3,498,338	+		GFF3458	0.18	-0.8
3,498,338	+		GFF3458	0.18	-3.1
3,498,338	+		GFF3458	0.18	-2.4
3,498,338	+		GFF3458	0.18	-1.4
3,498,338	+		GFF3458	0.18	-3.5
3,498,338	+		GFF3458	0.18	-3.0
3,498,340	-		GFF3458	0.18	-0.5
3,498,346	-		GFF3458	0.18	-1.5
3,498,346	-		GFF3458	0.18	-0.8
3,498,346	-		GFF3458	0.18	-2.4
3,498,346	-		GFF3458	0.18	-2.7
3,498,346	-		GFF3458	0.18	-1.7
3,498,346	-		GFF3458	0.18	-2.0
3,498,356	-		GFF3458	0.19	-1.2
3,498,380	+		GFF3458	0.22	-2.0
3,498,386	+		GFF3458	0.22	-2.3
3,498,389	-		GFF3458	0.23	-2.5
3,498,389	-		GFF3458	0.23	-2.0
3,498,391	+		GFF3458	0.23	-2.4
3,498,398	-		GFF3458	0.23	-3.4
3,498,399	-		GFF3458	0.23	-1.0
3,498,401	+		GFF3458	0.24	-2.5
3,498,411	+		GFF3458	0.25	-4.2
3,498,448	+		GFF3458	0.28	-2.1
3,498,456	+		GFF3458	0.29	-1.7
3,498,457	-		GFF3458	0.29	-3.4
3,498,459	+		GFF3458	0.29	-2.9
3,498,459	+		GFF3458	0.29	-1.2
3,498,460	+		GFF3458	0.29	-1.5
3,498,463	+		GFF3458	0.30	-1.6
3,498,464	+		GFF3458	0.30	-1.9
3,498,468	+		GFF3458	0.30	-1.1
3,498,468	+		GFF3458	0.30	-2.5
3,498,468	+		GFF3458	0.30	-3.1
3,498,500	+		GFF3458	0.33	-0.8
3,498,510	+		GFF3458	0.34	-1.6
3,498,513	-		GFF3458	0.34	-2.5
3,498,518	-		GFF3458	0.35	-0.1
3,498,523	-		GFF3458	0.35	-2.1
3,498,523	-		GFF3458	0.35	-2.4
3,498,525	-		GFF3458	0.36	-0.9
3,498,559	+		GFF3458	0.39	-2.3
3,498,559	+		GFF3458	0.39	-1.0
3,498,566	-		GFF3458	0.39	-0.8
3,498,603	-		GFF3458	0.43	-2.0
3,498,615	+		GFF3458	0.44	-2.0
3,498,631	-		GFF3458	0.46	-1.3
3,498,632	+		GFF3458	0.46	-1.7
3,498,640	-		GFF3458	0.47	-2.3
3,498,640	-		GFF3458	0.47	-2.9
3,498,650	+		GFF3458	0.48	-0.9
3,498,658	-		GFF3458	0.48	-1.8
3,498,658	-		GFF3458	0.48	-0.9
3,498,658	-		GFF3458	0.48	-2.5
3,498,658	-		GFF3458	0.48	-1.7
3,498,670	+		GFF3458	0.49	-1.3
3,498,678	-		GFF3458	0.50	-2.7
3,498,696	+		GFF3458	0.52	-2.1
3,498,734	+		GFF3458	0.56	-1.2
3,498,736	+		GFF3458	0.56	-1.0
3,498,736	+		GFF3458	0.56	-1.7
3,498,736	+		GFF3458	0.56	-2.0
3,498,744	-		GFF3458	0.57	-1.4
3,498,744	-		GFF3458	0.57	-0.8
3,498,744	-		GFF3458	0.57	-2.2
3,498,753	+		GFF3458	0.57	-1.2
3,498,753	+		GFF3458	0.57	-0.5
3,498,759	+		GFF3458	0.58	-1.4
3,498,767	-		GFF3458	0.59	-2.5
3,498,767	-		GFF3458	0.59	-1.8
3,498,778	-		GFF3458	0.60	-2.7
3,498,783	+		GFF3458	0.60	-1.2
3,498,843	+		GFF3458	0.66	-1.7
3,498,851	-		GFF3458	0.67	-1.5
3,498,873	+		GFF3458	0.69	-3.0
3,498,902	+		GFF3458	0.72	-3.6
3,498,908	-		GFF3458	0.72	-1.0
3,498,908	-		GFF3458	0.72	-1.7
3,498,908	-		GFF3458	0.72	-2.4
3,498,920	+		GFF3458	0.73	-1.7
3,498,928	-		GFF3458	0.74	-2.4
3,499,003	-		GFF3458	0.81	-2.1
3,499,005	+		GFF3458	0.82	-0.8
3,499,005	+		GFF3458	0.82	-2.6
3,499,013	-		GFF3458	0.82	-2.4
3,499,025	+		GFF3458	0.83	-2.6
3,499,030	+		GFF3458	0.84	-2.2
3,499,087	-		GFF3458	0.89	-2.5
3,499,095	+				-1.4
3,499,095	+				-2.4
3,499,095	+				-3.1
3,499,095	+				-2.3
3,499,103	-				-1.4
3,499,103	-				-2.3
3,499,103	-				-2.4
3,499,103	-				-2.6
3,499,136	+				-2.0
3,499,144	-				-2.0
3,499,180	-				-1.7
3,499,331	+				-1.7
3,499,392	+		GFF3459	0.10	+1.5
3,499,392	+		GFF3459	0.10	+0.7
3,499,392	+		GFF3459	0.10	+0.6
3,499,400	-		GFF3459	0.11	+1.1
3,499,409	-		GFF3459	0.12	-1.3
3,499,441	-		GFF3459	0.17	-1.3
3,499,458	-		GFF3459	0.19	-0.4
3,499,465	+		GFF3459	0.20	+1.1
3,499,484	+		GFF3459	0.23	+0.0
3,499,502	+		GFF3459	0.25	+0.3
3,499,502	+		GFF3459	0.25	-1.0
3,499,502	+		GFF3459	0.25	+1.3
3,499,508	-		GFF3459	0.26	+0.2
3,499,517	-		GFF3459	0.27	+0.2
3,499,522	-		GFF3459	0.28	+1.2
3,499,566	+		GFF3459	0.34	+1.0
3,499,594	+		GFF3459	0.38	+0.2
3,499,594	+		GFF3459	0.38	-0.3
3,499,594	+		GFF3459	0.38	-0.4
3,499,599	+		GFF3459	0.38	+0.5
3,499,599	+		GFF3459	0.38	-2.1
3,499,599	+		GFF3459	0.38	+0.1
3,499,602	-		GFF3459	0.39	+1.1
3,499,602	-		GFF3459	0.39	-0.2
3,499,602	-		GFF3459	0.39	-0.9
3,499,602	-		GFF3459	0.39	-0.8
3,499,607	-		GFF3459	0.39	-0.9
3,499,620	-		GFF3459	0.41	-0.1
3,499,653	-		GFF3459	0.46	+2.0
3,499,653	-		GFF3459	0.46	-0.2
3,499,658	+		GFF3459	0.46	-1.6
3,499,658	+		GFF3459	0.46	-0.7
3,499,664	-		GFF3459	0.47	-0.8
3,499,666	-		GFF3459	0.47	+2.4
3,499,739	+		GFF3459	0.57	-0.7
3,499,766	+		GFF3459	0.61	-0.1
3,499,822	+		GFF3459	0.69	-0.1
3,499,823	-		GFF3459	0.69	-0.9
3,499,827	+		GFF3459	0.69	+0.5
3,499,831	-		GFF3459	0.70	+0.1
3,499,840	+		GFF3459	0.71	-1.1
3,499,903	+		GFF3459	0.80	-1.2
3,499,918	-		GFF3459	0.82	+1.7
3,499,948	+		GFF3459	0.86	+0.4
3,499,956	-		GFF3459	0.87	+0.8
3,499,965	+		GFF3459	0.88	-1.2
3,499,967	-		GFF3459	0.88	-1.0
3,499,967	-		GFF3459	0.88	+0.0
3,499,970	+		GFF3459	0.89	-0.6
3,499,978	-		GFF3459	0.90	+0.2
3,500,026	-				-0.2
3,500,026	-				+0.2
3,500,028	+				-1.9
3,500,048	+				-0.0
3,500,056	-				-1.7
3,500,056	-				-1.8
3,500,062	-				-0.5
3,500,111	+				+0.7
3,500,111	+				-0.3
3,500,119	-				-1.3
3,500,119	-				+0.3
3,500,119	-				+1.0
3,500,124	-				-0.5
3,500,144	-				-0.2
3,500,144	-				-1.8
3,500,146	-				+0.7
3,500,151	-				-0.8
3,500,159	-				+0.8
3,500,161	-				-0.4
3,500,164	-				+0.2
3,500,213	-		GFF3460	0.12	-0.2
3,500,223	+		GFF3460	0.13	+0.6
3,500,236	+		GFF3460	0.15	+0.5
3,500,249	-		GFF3460	0.16	-1.3
3,500,258	-		GFF3460	0.17	-1.5
3,500,301	+		GFF3460	0.21	-1.6
3,500,335	-		GFF3460	0.25	-0.9
3,500,345	-		GFF3460	0.26	-1.0
3,500,347	+		GFF3460	0.26	-1.0
3,500,355	-		GFF3460	0.27	-0.3
3,500,355	-		GFF3460	0.27	+0.3
3,500,355	-		GFF3460	0.27	-2.2
3,500,355	-		GFF3460	0.27	-1.4
3,500,363	+		GFF3460	0.28	-0.8
3,500,365	-		GFF3460	0.28	-1.0
3,500,420	-		GFF3460	0.34	+0.3
3,500,436	-		GFF3460	0.35	+0.7
3,500,440	+		GFF3460	0.36	-0.2
3,500,458	+		GFF3460	0.37	+0.5
3,500,458	+		GFF3460	0.37	-0.4
3,500,463	+		GFF3460	0.38	-1.2
3,500,471	-		GFF3460	0.39	-2.8
3,500,515	+		GFF3460	0.43	-0.2
3,500,515	+		GFF3460	0.43	-0.1
3,500,523	-		GFF3460	0.44	-0.0
3,500,523	-		GFF3460	0.44	-2.6
3,500,523	-		GFF3460	0.44	+0.9
3,500,523	-		GFF3460	0.44	+0.1
3,500,524	-		GFF3460	0.44	+1.5
3,500,527	-		GFF3460	0.44	+1.1
3,500,527	-		GFF3460	0.44	-1.7
3,500,585	+		GFF3460	0.50	-2.5
3,500,625	+		GFF3460	0.54	-0.9
3,500,649	-		GFF3460	0.57	-0.0
3,500,663	+		GFF3460	0.58	-0.4
3,500,664	+		GFF3460	0.58	+0.2
3,500,665	+		GFF3460	0.59	-0.6
3,500,698	+		GFF3460	0.62	+0.2
3,500,728	+		GFF3460	0.65	+0.1
3,500,728	+		GFF3460	0.65	+0.5
3,500,741	-		GFF3460	0.66	+0.3
3,500,749	-		GFF3460	0.67	-0.9
3,500,863	+		GFF3460	0.79	-2.6
3,500,887	-		GFF3460	0.81	+0.1
3,500,890	+		GFF3460	0.81	+0.4
3,500,894	+		GFF3460	0.82	+0.6
3,500,898	-		GFF3460	0.82	-0.1
3,500,902	-		GFF3460	0.83	-1.2
3,500,913	+		GFF3460	0.84	-0.6
3,500,968	-		GFF3460	0.89	-0.8
3,500,977	+				-0.4