Strain Fitness in Sphingobium sp. HT1-2 around GFF3458

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,497,182	+		GFF3456	0.71	+0.5
3,497,246	+		GFF3456	0.77	-0.6
3,497,254	-		GFF3456	0.78	-0.2
3,497,254	-		GFF3456	0.78	+0.2
3,497,311	+		GFF3456	0.84	-2.4
3,497,311	+		GFF3456	0.84	-0.0
3,497,311	+		GFF3456	0.84	-1.7
3,497,311	+		GFF3456	0.84	-1.3
3,497,319	-		GFF3456	0.85	+0.1
3,497,319	-		GFF3456	0.85	+0.6
3,497,319	-		GFF3456	0.85	-1.2
3,497,319	-		GFF3456	0.85	+0.5
3,497,319	-		GFF3456	0.85	-2.0
3,497,319	-		GFF3456	0.85	-0.6
3,497,362	-		GFF3456	0.89	-0.4
3,497,450	+				-1.0
3,497,463	-				+0.6
3,497,494	-				-1.1
3,497,513	-				+0.1
3,497,529	+				+1.6
3,497,537	-				+0.4
3,497,556	-				+0.3
3,497,628	+				-0.3
3,497,649	+				+1.0
3,497,649	+				-1.9
3,497,654	+				-0.1
3,497,757	+		GFF3457	0.25	+0.5
3,497,807	+		GFF3457	0.37	-0.5
3,497,838	+		GFF3457	0.45	+0.0
3,497,893	+		GFF3457	0.58	-0.1
3,497,906	-		GFF3457	0.61	-0.6
3,497,922	+		GFF3457	0.65	-0.7
3,497,924	+		GFF3457	0.65	-2.1
3,497,924	+		GFF3457	0.65	-0.2
3,497,924	+		GFF3457	0.65	-1.3
3,497,930	-		GFF3457	0.67	+1.8
3,497,931	+		GFF3457	0.67	+0.6
3,497,932	-		GFF3457	0.67	-0.1
3,497,935	+		GFF3457	0.68	-0.6
3,497,940	+		GFF3457	0.69	-0.5
3,497,945	-		GFF3457	0.70	-1.6
3,497,953	-		GFF3457	0.72	+0.2
3,497,967	+		GFF3457	0.76	-0.2
3,497,983	-		GFF3457	0.79	+0.2
3,498,043	-				+0.4
3,498,045	-				+0.4
3,498,048	-				-0.3
3,498,054	-				-0.7
3,498,181	+				-2.5
3,498,183	+				+0.1
3,498,205	+				-0.8
3,498,223	+				-2.5
3,498,247	-				-2.6
3,498,262	-		GFF3458	0.10	-2.4
3,498,282	+		GFF3458	0.12	-1.7
3,498,282	+		GFF3458	0.12	-2.0
3,498,295	+		GFF3458	0.14	-1.2
3,498,338	+		GFF3458	0.18	-2.9
3,498,338	+		GFF3458	0.18	-0.8
3,498,338	+		GFF3458	0.18	-3.1
3,498,338	+		GFF3458	0.18	-2.4
3,498,338	+		GFF3458	0.18	-1.4
3,498,338	+		GFF3458	0.18	-3.5
3,498,338	+		GFF3458	0.18	-3.0
3,498,340	-		GFF3458	0.18	-0.5
3,498,346	-		GFF3458	0.18	-1.5
3,498,346	-		GFF3458	0.18	-0.8
3,498,346	-		GFF3458	0.18	-2.4
3,498,346	-		GFF3458	0.18	-2.7
3,498,346	-		GFF3458	0.18	-1.7
3,498,346	-		GFF3458	0.18	-2.0
3,498,356	-		GFF3458	0.19	-1.2
3,498,380	+		GFF3458	0.22	-2.0
3,498,386	+		GFF3458	0.22	-2.3
3,498,389	-		GFF3458	0.23	-2.5
3,498,389	-		GFF3458	0.23	-2.0
3,498,391	+		GFF3458	0.23	-2.4
3,498,398	-		GFF3458	0.23	-3.4
3,498,399	-		GFF3458	0.23	-1.0
3,498,401	+		GFF3458	0.24	-2.5
3,498,411	+		GFF3458	0.25	-4.2
3,498,448	+		GFF3458	0.28	-2.1
3,498,456	+		GFF3458	0.29	-1.7
3,498,457	-		GFF3458	0.29	-3.4
3,498,459	+		GFF3458	0.29	-2.9
3,498,459	+		GFF3458	0.29	-1.2
3,498,460	+		GFF3458	0.29	-1.5
3,498,463	+		GFF3458	0.30	-1.6
3,498,464	+		GFF3458	0.30	-1.9
3,498,468	+		GFF3458	0.30	-1.1
3,498,468	+		GFF3458	0.30	-2.5
3,498,468	+		GFF3458	0.30	-3.1
3,498,500	+		GFF3458	0.33	-0.8
3,498,510	+		GFF3458	0.34	-1.6
3,498,513	-		GFF3458	0.34	-2.5
3,498,518	-		GFF3458	0.35	-0.1
3,498,523	-		GFF3458	0.35	-2.1
3,498,523	-		GFF3458	0.35	-2.4
3,498,525	-		GFF3458	0.36	-0.9
3,498,559	+		GFF3458	0.39	-2.3
3,498,559	+		GFF3458	0.39	-1.0
3,498,566	-		GFF3458	0.39	-0.8
3,498,603	-		GFF3458	0.43	-2.0
3,498,615	+		GFF3458	0.44	-2.0
3,498,631	-		GFF3458	0.46	-1.3
3,498,632	+		GFF3458	0.46	-1.7
3,498,640	-		GFF3458	0.47	-2.3
3,498,640	-		GFF3458	0.47	-2.9
3,498,650	+		GFF3458	0.48	-0.9
3,498,658	-		GFF3458	0.48	-1.8
3,498,658	-		GFF3458	0.48	-0.9
3,498,658	-		GFF3458	0.48	-2.5
3,498,658	-		GFF3458	0.48	-1.7
3,498,670	+		GFF3458	0.49	-1.3
3,498,678	-		GFF3458	0.50	-2.7
3,498,696	+		GFF3458	0.52	-2.1
3,498,734	+		GFF3458	0.56	-1.2
3,498,736	+		GFF3458	0.56	-1.0
3,498,736	+		GFF3458	0.56	-1.7
3,498,736	+		GFF3458	0.56	-2.0
3,498,744	-		GFF3458	0.57	-1.4
3,498,744	-		GFF3458	0.57	-0.8
3,498,744	-		GFF3458	0.57	-2.2
3,498,753	+		GFF3458	0.57	-1.2
3,498,753	+		GFF3458	0.57	-0.5
3,498,759	+		GFF3458	0.58	-1.4
3,498,767	-		GFF3458	0.59	-2.5
3,498,767	-		GFF3458	0.59	-1.8
3,498,778	-		GFF3458	0.60	-2.7
3,498,783	+		GFF3458	0.60	-1.2
3,498,843	+		GFF3458	0.66	-1.7
3,498,851	-		GFF3458	0.67	-1.5
3,498,873	+		GFF3458	0.69	-3.0
3,498,902	+		GFF3458	0.72	-3.6
3,498,908	-		GFF3458	0.72	-1.0
3,498,908	-		GFF3458	0.72	-1.7
3,498,908	-		GFF3458	0.72	-2.4
3,498,920	+		GFF3458	0.73	-1.7
3,498,928	-		GFF3458	0.74	-2.4
3,499,003	-		GFF3458	0.81	-2.1
3,499,005	+		GFF3458	0.82	-0.8
3,499,005	+		GFF3458	0.82	-2.6
3,499,013	-		GFF3458	0.82	-2.4
3,499,025	+		GFF3458	0.83	-2.6
3,499,030	+		GFF3458	0.84	-2.2
3,499,087	-		GFF3458	0.89	-2.5
3,499,095	+				-1.4
3,499,095	+				-2.4
3,499,095	+				-3.1
3,499,095	+				-2.3
3,499,103	-				-1.4
3,499,103	-				-2.3
3,499,103	-				-2.4
3,499,103	-				-2.6
3,499,136	+				-2.0
3,499,144	-				-2.0
3,499,180	-				-1.7
3,499,331	+				-1.7
3,499,392	+		GFF3459	0.10	+1.5
3,499,392	+		GFF3459	0.10	+0.7
3,499,392	+		GFF3459	0.10	+0.6
3,499,400	-		GFF3459	0.11	+1.1
3,499,409	-		GFF3459	0.12	-1.3
3,499,441	-		GFF3459	0.17	-1.3
3,499,458	-		GFF3459	0.19	-0.4
3,499,465	+		GFF3459	0.20	+1.1
3,499,484	+		GFF3459	0.23	+0.0
3,499,502	+		GFF3459	0.25	+0.3
3,499,502	+		GFF3459	0.25	-1.0
3,499,502	+		GFF3459	0.25	+1.3
3,499,508	-		GFF3459	0.26	+0.2
3,499,517	-		GFF3459	0.27	+0.2
3,499,522	-		GFF3459	0.28	+1.2
3,499,566	+		GFF3459	0.34	+1.0
3,499,594	+		GFF3459	0.38	+0.2
3,499,594	+		GFF3459	0.38	-0.3
3,499,594	+		GFF3459	0.38	-0.4
3,499,599	+		GFF3459	0.38	+0.5
3,499,599	+		GFF3459	0.38	-2.1
3,499,599	+		GFF3459	0.38	+0.1
3,499,602	-		GFF3459	0.39	+1.1
3,499,602	-		GFF3459	0.39	-0.2
3,499,602	-		GFF3459	0.39	-0.9
3,499,602	-		GFF3459	0.39	-0.8
3,499,607	-		GFF3459	0.39	-0.9
3,499,620	-		GFF3459	0.41	-0.1
3,499,653	-		GFF3459	0.46	+2.0
3,499,653	-		GFF3459	0.46	-0.2
3,499,658	+		GFF3459	0.46	-1.6
3,499,658	+		GFF3459	0.46	-0.7
3,499,664	-		GFF3459	0.47	-0.8
3,499,666	-		GFF3459	0.47	+2.4
3,499,739	+		GFF3459	0.57	-0.7
3,499,766	+		GFF3459	0.61	-0.1
3,499,822	+		GFF3459	0.69	-0.1
3,499,823	-		GFF3459	0.69	-0.9
3,499,827	+		GFF3459	0.69	+0.5
3,499,831	-		GFF3459	0.70	+0.1
3,499,840	+		GFF3459	0.71	-1.1
3,499,903	+		GFF3459	0.80	-1.2
3,499,918	-		GFF3459	0.82	+1.7
3,499,948	+		GFF3459	0.86	+0.4
3,499,956	-		GFF3459	0.87	+0.8
3,499,965	+		GFF3459	0.88	-1.2
3,499,967	-		GFF3459	0.88	-1.0
3,499,967	-		GFF3459	0.88	+0.0
3,499,970	+		GFF3459	0.89	-0.6
3,499,978	-		GFF3459	0.90	+0.2
3,500,026	-				-0.2
3,500,026	-				+0.2
3,500,028	+				-1.9
3,500,048	+				-0.0
3,500,056	-				-1.7
3,500,056	-				-1.8
3,500,062	-				-0.5
3,500,111	+				+0.7
3,500,111	+				-0.3
3,500,119	-				-1.3
3,500,119	-				+0.3
3,500,119	-				+1.0
3,500,124	-				-0.5
3,500,144	-				-0.2
3,500,144	-				-1.8
3,500,146	-				+0.7
3,500,151	-				-0.8
3,500,159	-				+0.8
3,500,161	-				-0.4
3,500,164	-				+0.2