Strain Fitness in Sphingobium sp. HT1-2 around GFF3328

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,380,656	+		GFF3326	0.88	+0.0
3,380,664	-		GFF3326	0.89	+0.4
3,380,664	-		GFF3326	0.89	+0.3
3,380,664	-		GFF3326	0.89	+1.0
3,380,664	-		GFF3326	0.89	+1.9
3,380,672	-		GFF3326	0.90	-1.2
3,380,687	-				-0.2
3,380,688	-				-0.3
3,380,703	-				+0.4
3,380,762	-				+0.4
3,380,795	+				-1.3
3,380,798	-				-0.2
3,380,798	-				+0.4
3,380,798	-				+0.6
3,380,798	-				-1.8
3,380,807	+				+1.4
3,380,837	-		GFF3327	0.10	+0.5
3,380,838	-		GFF3327	0.10	-1.4
3,380,878	+		GFF3327	0.16	+0.3
3,380,878	+		GFF3327	0.16	-1.0
3,380,878	+		GFF3327	0.16	-0.2
3,380,879	+		GFF3327	0.16	-0.4
3,380,886	-		GFF3327	0.17	-0.7
3,380,886	-		GFF3327	0.17	-1.1
3,380,886	-		GFF3327	0.17	-0.1
3,380,886	-		GFF3327	0.17	-0.2
3,380,889	-		GFF3327	0.17	+1.0
3,380,897	-		GFF3327	0.19	-0.2
3,380,904	+		GFF3327	0.20	+0.2
3,380,904	+		GFF3327	0.20	+1.5
3,380,912	-		GFF3327	0.21	-0.1
3,380,915	+		GFF3327	0.21	-0.4
3,380,915	+		GFF3327	0.21	+1.9
3,380,915	+		GFF3327	0.21	-0.5
3,380,920	-		GFF3327	0.22	+0.2
3,380,922	+		GFF3327	0.22	+0.9
3,380,923	+		GFF3327	0.22	-0.2
3,380,932	+		GFF3327	0.23	+0.8
3,380,937	+		GFF3327	0.24	+1.4
3,380,940	-		GFF3327	0.25	+0.3
3,380,948	+		GFF3327	0.26	-0.9
3,380,956	-		GFF3327	0.27	-0.5
3,380,977	+		GFF3327	0.30	-0.5
3,381,002	-		GFF3327	0.33	+0.3
3,381,005	+		GFF3327	0.34	+1.1
3,381,005	+		GFF3327	0.34	-0.3
3,381,013	-		GFF3327	0.35	-0.4
3,381,027	+		GFF3327	0.37	+0.5
3,381,028	-		GFF3327	0.37	+0.3
3,381,035	+		GFF3327	0.38	-0.8
3,381,043	-		GFF3327	0.39	+1.4
3,381,043	-		GFF3327	0.39	-0.1
3,381,043	-		GFF3327	0.39	+0.9
3,381,045	-		GFF3327	0.39	-0.9
3,381,048	-		GFF3327	0.40	+0.2
3,381,053	-		GFF3327	0.41	+1.3
3,381,053	-		GFF3327	0.41	+0.8
3,381,055	+		GFF3327	0.41	+0.6
3,381,055	+		GFF3327	0.41	+0.5
3,381,055	+		GFF3327	0.41	+0.5
3,381,055	+		GFF3327	0.41	+0.4
3,381,055	+		GFF3327	0.41	-1.6
3,381,063	-		GFF3327	0.42	-0.8
3,381,063	-		GFF3327	0.42	-0.4
3,381,076	-		GFF3327	0.44	+0.7
3,381,082	+		GFF3327	0.45	+0.9
3,381,083	+		GFF3327	0.45	-0.4
3,381,088	+		GFF3327	0.45	+0.5
3,381,088	+		GFF3327	0.45	+0.4
3,381,088	+		GFF3327	0.45	+0.7
3,381,088	+		GFF3327	0.45	-0.7
3,381,088	+		GFF3327	0.45	-0.7
3,381,088	+		GFF3327	0.45	-0.8
3,381,088	+		GFF3327	0.45	-0.5
3,381,088	+		GFF3327	0.45	+0.9
3,381,088	+		GFF3327	0.45	+1.3
3,381,088	+		GFF3327	0.45	+0.2
3,381,088	+		GFF3327	0.45	-0.4
3,381,091	-		GFF3327	0.46	-0.7
3,381,093	+		GFF3327	0.46	-0.3
3,381,093	+		GFF3327	0.46	-0.4
3,381,096	-		GFF3327	0.47	+0.3
3,381,096	-		GFF3327	0.47	+0.4
3,381,096	-		GFF3327	0.47	-0.1
3,381,096	-		GFF3327	0.47	+0.8
3,381,096	-		GFF3327	0.47	-1.0
3,381,096	-		GFF3327	0.47	+0.7
3,381,096	-		GFF3327	0.47	+0.4
3,381,096	-		GFF3327	0.47	-2.3
3,381,096	-		GFF3327	0.47	+0.9
3,381,096	-		GFF3327	0.47	-0.4
3,381,096	-		GFF3327	0.47	-0.5
3,381,096	-		GFF3327	0.47	-1.3
3,381,096	-		GFF3327	0.47	+0.1
3,381,096	-		GFF3327	0.47	+1.5
3,381,098	+		GFF3327	0.47	-1.8
3,381,101	-		GFF3327	0.47	-1.3
3,381,106	-		GFF3327	0.48	-0.1
3,381,167	-		GFF3327	0.57	+0.4
3,381,189	+		GFF3327	0.60	-0.6
3,381,195	-		GFF3327	0.60	+0.6
3,381,214	+		GFF3327	0.63	-1.3
3,381,238	+		GFF3327	0.67	+0.4
3,381,241	-		GFF3327	0.67	-1.4
3,381,257	+		GFF3327	0.69	-0.7
3,381,274	-		GFF3327	0.72	+1.1
3,381,279	-		GFF3327	0.72	+1.0
3,381,295	+		GFF3327	0.75	-1.0
3,381,318	+		GFF3327	0.78	-1.1
3,381,318	+		GFF3327	0.78	+0.5
3,381,318	+		GFF3327	0.78	+0.2
3,381,318	+		GFF3327	0.78	+0.3
3,381,318	+		GFF3327	0.78	-0.8
3,381,321	-		GFF3327	0.78	+1.4
3,381,326	-		GFF3327	0.79	-0.3
3,381,326	-		GFF3327	0.79	-0.9
3,381,326	-		GFF3327	0.79	+0.8
3,381,326	-		GFF3327	0.79	+0.3
3,381,326	-		GFF3327	0.79	-0.1
3,381,326	-		GFF3327	0.79	-1.4
3,381,326	-		GFF3327	0.79	-1.2
3,381,326	-		GFF3327	0.79	+0.1
3,381,326	-		GFF3327	0.79	-0.9
3,381,335	-		GFF3327	0.80	+0.4
3,381,337	+		GFF3327	0.80	-0.1
3,381,342	+		GFF3327	0.81	-1.3
3,381,342	+		GFF3327	0.81	-2.0
3,381,350	-		GFF3327	0.82	-0.5
3,381,352	+		GFF3327	0.83	-0.7
3,381,355	-		GFF3327	0.83	-1.4
3,381,358	+		GFF3327	0.83	-0.9
3,381,360	-		GFF3327	0.84	+0.7
3,381,362	+		GFF3327	0.84	-0.8
3,381,414	-				+0.1
3,381,415	+				-1.5
3,381,415	+				+0.3
3,381,423	-				+1.0
3,381,423	-				-0.6
3,381,425	+				-0.1
3,381,425	+				+0.3
3,381,425	+				-1.0
3,381,425	+				+1.0
3,381,425	+				-0.4
3,381,425	+				-0.4
3,381,425	+				+0.8
3,381,425	+				+0.1
3,381,425	+				+0.5
3,381,425	+				-0.5
3,381,425	+				-3.6
3,381,425	+				-0.3
3,381,425	+				-0.2
3,381,425	+				-1.9
3,381,425	+				-0.4
3,381,425	+				-0.4
3,381,425	+				+0.4
3,381,425	+				-0.3
3,381,432	+				-0.3
3,381,433	-				+1.3
3,381,433	-				-1.9
3,381,433	-				-0.8
3,381,433	-				-1.4
3,381,433	-				-1.7
3,381,433	-				-0.2
3,381,433	-				-0.2
3,381,433	-				-1.6
3,381,433	-				+0.3
3,381,433	-				-0.1
3,381,433	-				+0.6
3,381,433	-				+0.5
3,381,433	-				+0.6
3,381,433	-				+0.3
3,381,433	-				-0.7
3,381,433	-				-0.3
3,381,433	-				+0.9
3,381,433	-				-1.8
3,381,433	-				+0.0
3,381,433	-				+0.9
3,381,433	-				+0.8
3,381,433	-				+0.7
3,381,433	-				-0.3
3,381,440	-				-1.5
3,381,475	+				-0.1
3,381,498	+				-1.0
3,381,501	+				-0.8
3,381,501	+				+1.7
3,381,503	+				-1.5
3,381,506	-				-2.0
3,381,506	-				-0.5
3,381,509	-				+0.3
3,381,526	+				-0.7
3,381,526	+				+0.6
3,381,551	+				+1.3
3,381,598	-				+0.1
3,381,618	-				+0.3
3,381,659	+				-0.3
3,381,868	+		GFF3328	0.25	-0.9
3,382,508	+				-0.6
3,382,508	+				+0.1
3,382,508	+				-0.4
3,382,508	+				+1.1
3,382,508	+				+0.6
3,382,516	-				-0.0
3,382,520	+				-1.1
3,382,521	+				-2.5
3,382,521	+				+0.9
3,382,528	-				-0.3
3,382,529	-				-0.1
3,382,534	-				+0.1
3,382,539	+				-1.0
3,382,539	+				-1.4
3,382,539	+				+0.5
3,382,539	+				-0.1
3,382,539	+				-0.7
3,382,539	+				-0.1
3,382,539	+				-0.5
3,382,539	+				+0.1
3,382,539	+				-1.1
3,382,539	+				-1.1
3,382,539	+				+0.2
3,382,547	-				+0.0
3,382,547	-				-0.0
3,382,547	-				+1.2
3,382,547	-				+0.3
3,382,550	+				+0.1
3,382,591	+				+0.2
3,382,596	-				+0.3
3,382,630	+		GFF3329	0.12	-0.1
3,382,635	+		GFF3329	0.12	-0.5
3,382,635	+		GFF3329	0.12	-2.9
3,382,638	-		GFF3329	0.13	-0.8
3,382,640	+		GFF3329	0.13	+1.0
3,382,640	+		GFF3329	0.13	-1.3
3,382,640	+		GFF3329	0.13	-1.2
3,382,640	+		GFF3329	0.13	-0.2
3,382,640	+		GFF3329	0.13	-2.3
3,382,640	+		GFF3329	0.13	-0.8
3,382,640	+		GFF3329	0.13	-0.9
3,382,643	-		GFF3329	0.13	+0.2
3,382,643	-		GFF3329	0.13	+1.1
3,382,648	-		GFF3329	0.14	-0.8
3,382,648	-		GFF3329	0.14	+0.3
3,382,664	+		GFF3329	0.16	-1.6
3,382,672	-		GFF3329	0.16	-0.3
3,382,694	-		GFF3329	0.19	-0.8
3,382,706	-		GFF3329	0.20	-1.1
3,382,716	-		GFF3329	0.21	+0.2
3,382,716	-		GFF3329	0.21	-0.6
3,382,716	-		GFF3329	0.21	-0.5
3,382,733	+		GFF3329	0.23	+0.9
3,382,733	+		GFF3329	0.23	-1.3
3,382,741	-		GFF3329	0.24	-0.1
3,382,752	+		GFF3329	0.25	-0.4
3,382,762	+		GFF3329	0.26	-0.3
3,382,762	+		GFF3329	0.26	-0.8
3,382,765	+		GFF3329	0.27	+1.0
3,382,770	-		GFF3329	0.27	+0.5
3,382,770	-		GFF3329	0.27	-0.2
3,382,773	+		GFF3329	0.28	+0.2
3,382,773	-		GFF3329	0.28	-0.5
3,382,773	-		GFF3329	0.28	-0.3
3,382,773	-		GFF3329	0.28	+0.0
3,382,779	-		GFF3329	0.28	-1.1
3,382,781	-		GFF3329	0.28	+0.9
3,382,781	-		GFF3329	0.28	-2.1
3,382,781	-		GFF3329	0.28	+1.1
3,382,803	-		GFF3329	0.31	+0.8
3,382,804	+		GFF3329	0.31	-1.1
3,382,812	-		GFF3329	0.32	+0.2
3,382,835	+		GFF3329	0.34	-1.1
3,382,843	-		GFF3329	0.35	+1.0
3,382,858	+		GFF3329	0.37	-0.3
3,382,858	+		GFF3329	0.37	-0.2
3,382,858	+		GFF3329	0.37	-0.7
3,382,866	-		GFF3329	0.38	-1.1
3,382,866	-		GFF3329	0.38	-1.1
3,382,879	+		GFF3329	0.39	-0.1
3,382,903	+		GFF3329	0.42	-0.5
3,382,903	-		GFF3329	0.42	-0.2
3,382,910	+		GFF3329	0.43	-0.6
3,382,910	+		GFF3329	0.43	+0.7
3,382,911	+		GFF3329	0.43	+0.3
3,382,911	+		GFF3329	0.43	-0.3
3,382,911	+		GFF3329	0.43	-1.9
3,382,911	+		GFF3329	0.43	-1.9
3,382,918	-		GFF3329	0.44	+0.3
3,382,918	-		GFF3329	0.44	+0.3
3,382,918	-		GFF3329	0.44	-0.3
3,382,919	-		GFF3329	0.44	-0.9
3,382,919	-		GFF3329	0.44	-1.2
3,382,919	-		GFF3329	0.44	-0.1
3,382,919	-		GFF3329	0.44	+0.3
3,382,932	+		GFF3329	0.45	+0.6
3,382,937	+		GFF3329	0.46	-0.3
3,383,029	+		GFF3329	0.56	-1.1
3,383,065	-		GFF3329	0.60	-0.9
3,383,065	-		GFF3329	0.60	-0.5
3,383,126	+		GFF3329	0.67	-1.2
3,383,128	-		GFF3329	0.67	+0.4
3,383,132	+		GFF3329	0.67	-2.6
3,383,134	-		GFF3329	0.67	+1.2
3,383,139	-		GFF3329	0.68	+0.1
3,383,149	-		GFF3329	0.69	-1.4
3,383,163	-		GFF3329	0.71	-0.9
3,383,174	-		GFF3329	0.72	+0.3
3,383,197	+		GFF3329	0.74	+0.7
3,383,197	+		GFF3329	0.74	-0.7
3,383,203	-		GFF3329	0.75	+0.8
3,383,205	-		GFF3329	0.75	+0.7
3,383,205	-		GFF3329	0.75	-0.6
3,383,213	-		GFF3329	0.76	-0.9
3,383,213	-		GFF3329	0.76	+1.2
3,383,215	+		GFF3329	0.76	+0.3
3,383,223	-		GFF3329	0.77	-0.5
3,383,248	+		GFF3329	0.80	-1.5
3,383,253	+		GFF3329	0.81	+0.2
3,383,253	+		GFF3329	0.81	-1.3
3,383,256	-		GFF3329	0.81	-1.1
3,383,260	+		GFF3329	0.81	+0.7
3,383,270	-		GFF3329	0.82	-0.5
3,383,272	+		GFF3329	0.83	-1.9
3,383,285	-		GFF3329	0.84	-0.2
3,383,292	+		GFF3329	0.85	+0.3
3,383,292	+		GFF3329	0.85	+1.5
3,383,320	-		GFF3329	0.88	-1.5
3,383,325	+		GFF3329	0.89	+0.8
3,383,326	-		GFF3329	0.89	-0.7
3,383,330	+		GFF3329	0.89	-0.2
3,383,331	+		GFF3329	0.89	+1.0
3,383,338	+				-0.1
3,383,338	+				-0.4
3,383,338	-				+0.1
3,383,346	-				-0.7
3,383,346	-				-0.4
3,383,348	-				+0.1
3,383,362	-				-0.6
3,383,377	+				-1.7
3,383,377	+				+0.5
3,383,377	+				-0.5
3,383,377	+				-2.1
3,383,377	+				-1.0
3,383,385	-				-0.1
3,383,385	-				+0.1
3,383,385	-				-0.1
3,383,385	-				-0.1
3,383,410	+				+1.7
3,383,413	-				+0.0
3,383,418	-				+0.6
3,383,425	+				-1.3
3,383,425	+				+0.3
3,383,435	+				-2.1
3,383,435	+				+0.5
3,383,444	+				-1.0
3,383,449	+				-0.2
3,383,449	+				-0.6
3,383,457	-				-0.1
3,383,457	-				-1.3
3,383,457	-				-2.0
3,383,487	+		GFF3330	0.12	+0.3
3,383,487	+		GFF3330	0.12	-2.0
3,383,487	+		GFF3330	0.12	+1.0
3,383,487	+		GFF3330	0.12	-1.2
3,383,487	+		GFF3330	0.12	+0.1
3,383,488	+		GFF3330	0.13	-2.5
3,383,488	+		GFF3330	0.13	-0.2
3,383,495	-		GFF3330	0.15	-0.9
3,383,495	-		GFF3330	0.15	-0.5
3,383,495	-		GFF3330	0.15	-1.1
3,383,495	-		GFF3330	0.15	-1.3
3,383,495	-		GFF3330	0.15	+0.6
3,383,495	-		GFF3330	0.15	-0.0
3,383,495	-		GFF3330	0.15	-0.7
3,383,495	-		GFF3330	0.15	-0.1
3,383,496	-		GFF3330	0.16	-1.7
3,383,496	-		GFF3330	0.16	-0.6
3,383,496	-		GFF3330	0.16	-0.4
3,383,503	-		GFF3330	0.18	+0.3