Strain Fitness in Sphingobium sp. HT1-2 around GFF3322

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,375,531	-				-0.4
3,375,594	-				-0.4
3,375,594	-				-1.6
3,375,605	+				+0.1
3,375,619	-				+1.1
3,375,643	-				+0.1
3,375,743	-				+0.6
3,375,763	-				-0.1
3,375,819	+		GFF3321	0.17	-0.1
3,375,819	+		GFF3321	0.17	+1.4
3,375,819	+		GFF3321	0.17	-0.1
3,375,819	+		GFF3321	0.17	-1.8
3,375,827	-		GFF3321	0.18	+1.3
3,375,827	-		GFF3321	0.18	+0.7
3,375,827	-		GFF3321	0.18	-0.8
3,375,827	-		GFF3321	0.18	+1.7
3,375,827	-		GFF3321	0.18	+1.1
3,375,832	-		GFF3321	0.18	+0.7
3,375,834	-		GFF3321	0.18	-0.4
3,375,867	+		GFF3321	0.23	-1.3
3,375,875	-		GFF3321	0.24	-0.6
3,375,875	-		GFF3321	0.24	-0.0
3,375,883	-		GFF3321	0.25	-0.3
3,375,893	-		GFF3321	0.26	-0.4
3,375,904	-		GFF3321	0.27	-1.9
3,375,937	+		GFF3321	0.31	+0.6
3,375,997	+		GFF3321	0.39	+0.2
3,375,997	+		GFF3321	0.39	-0.9
3,375,997	+		GFF3321	0.39	+1.4
3,375,997	+		GFF3321	0.39	+1.1
3,375,999	+		GFF3321	0.39	+1.3
3,376,005	-		GFF3321	0.40	+0.4
3,376,005	-		GFF3321	0.40	+0.7
3,376,005	-		GFF3321	0.40	-0.1
3,376,005	-		GFF3321	0.40	-0.3
3,376,005	-		GFF3321	0.40	-1.7
3,376,011	+		GFF3321	0.41	-0.3
3,376,055	-		GFF3321	0.46	+1.4
3,376,061	+		GFF3321	0.47	+0.6
3,376,061	+		GFF3321	0.47	+0.7
3,376,069	-		GFF3321	0.48	+0.4
3,376,069	-		GFF3321	0.48	+0.3
3,376,082	-		GFF3321	0.50	+1.3
3,376,086	+		GFF3321	0.50	+0.7
3,376,092	-		GFF3321	0.51	+1.1
3,376,113	+		GFF3321	0.54	+0.7
3,376,181	-		GFF3321	0.62	-0.6
3,376,194	+		GFF3321	0.64	-1.0
3,376,199	+		GFF3321	0.65	+0.5
3,376,199	+		GFF3321	0.65	+0.0
3,376,215	+		GFF3321	0.67	-1.3
3,376,220	+		GFF3321	0.67	-0.9
3,376,220	+		GFF3321	0.67	-3.4
3,376,220	+		GFF3321	0.67	-0.7
3,376,228	-		GFF3321	0.68	+1.0
3,376,228	-		GFF3321	0.68	-2.3
3,376,229	+		GFF3321	0.68	+0.7
3,376,266	+		GFF3321	0.73	-0.9
3,376,275	-		GFF3321	0.74	+2.1
3,376,275	-		GFF3321	0.74	+0.9
3,376,296	+		GFF3321	0.77	-1.1
3,376,303	+		GFF3321	0.78	+0.9
3,376,305	+		GFF3321	0.78	+0.6
3,376,305	+		GFF3321	0.78	+2.0
3,376,305	+		GFF3321	0.78	-0.7
3,376,305	+		GFF3321	0.78	+0.6
3,376,306	+		GFF3321	0.78	+0.8
3,376,308	-		GFF3321	0.78	-0.8
3,376,313	-		GFF3321	0.79	+0.1
3,376,313	-		GFF3321	0.79	+0.4
3,376,313	-		GFF3321	0.79	-2.0
3,376,324	-		GFF3321	0.80	+0.3
3,376,346	+		GFF3321	0.83	-2.1
3,376,360	-		GFF3321	0.85	-1.1
3,376,360	-		GFF3321	0.85	-0.3
3,376,391	-		GFF3321	0.89	-0.7
3,376,400	+				-0.4
3,376,410	+				-0.2
3,376,410	+				+0.3
3,376,424	-				-1.0
3,376,428	+				+0.8
3,376,486	-				-0.7
3,376,509	+				-2.0
3,376,566	-				-1.6
3,376,589	-				-2.7
3,376,605	-				-3.8
3,376,695	+		GFF3322	0.15	-1.9
3,376,695	+		GFF3322	0.15	-2.0
3,376,713	+		GFF3322	0.17	-1.6
3,376,721	-		GFF3322	0.18	-2.2
3,376,721	-		GFF3322	0.18	-2.0
3,376,765	+		GFF3322	0.22	-2.3
3,376,765	+		GFF3322	0.22	-3.2
3,376,765	+		GFF3322	0.22	-3.2
3,376,765	-		GFF3322	0.22	-0.1
3,376,765	-		GFF3322	0.22	-1.0
3,376,773	-		GFF3322	0.22	-2.1
3,376,773	-		GFF3322	0.22	-2.5
3,376,796	+		GFF3322	0.24	-2.2
3,376,808	+		GFF3322	0.25	-2.7
3,376,833	+		GFF3322	0.28	-2.5
3,376,841	-		GFF3322	0.28	-0.6
3,376,856	-		GFF3322	0.30	-1.0
3,376,882	+		GFF3322	0.32	-1.8
3,376,971	-		GFF3322	0.40	-2.9
3,376,984	+		GFF3322	0.41	-2.5
3,376,984	+		GFF3322	0.41	-1.8
3,376,984	+		GFF3322	0.41	-2.0
3,376,984	+		GFF3322	0.41	-2.1
3,376,989	+		GFF3322	0.42	-0.8
3,376,992	-		GFF3322	0.42	-2.9
3,376,992	-		GFF3322	0.42	-3.5
3,376,992	-		GFF3322	0.42	-2.6
3,377,037	+		GFF3322	0.46	+0.1
3,377,045	-		GFF3322	0.47	-1.1
3,377,046	+		GFF3322	0.47	-1.8
3,377,064	-		GFF3322	0.48	-1.8
3,377,074	-		GFF3322	0.49	-0.3
3,377,101	+		GFF3322	0.52	-0.9
3,377,101	+		GFF3322	0.52	-2.7
3,377,101	+		GFF3322	0.52	-1.0
3,377,101	+		GFF3322	0.52	-2.7
3,377,101	+		GFF3322	0.52	-2.8
3,377,106	+		GFF3322	0.52	-1.9
3,377,109	-		GFF3322	0.53	-1.3
3,377,109	-		GFF3322	0.53	-1.4
3,377,109	-		GFF3322	0.53	-0.9
3,377,109	-		GFF3322	0.53	-1.6
3,377,109	-		GFF3322	0.53	-1.1
3,377,131	+		GFF3322	0.55	-2.6
3,377,134	-		GFF3322	0.55	-1.1
3,377,138	-		GFF3322	0.55	-0.6
3,377,150	-		GFF3322	0.56	-0.7
3,377,152	+		GFF3322	0.56	-3.3
3,377,152	+		GFF3322	0.56	-2.6
3,377,152	+		GFF3322	0.56	-3.4
3,377,152	+		GFF3322	0.56	-1.0
3,377,160	-		GFF3322	0.57	-1.7
3,377,188	-		GFF3322	0.60	-2.8
3,377,225	+		GFF3322	0.63	-0.8
3,377,230	+		GFF3322	0.63	-2.0
3,377,230	+		GFF3322	0.63	-2.1
3,377,230	+		GFF3322	0.63	+0.4
3,377,249	-		GFF3322	0.65	-1.8
3,377,249	-		GFF3322	0.65	-1.6
3,377,258	+		GFF3322	0.66	-2.1
3,377,260	+		GFF3322	0.66	-2.5
3,377,349	-		GFF3322	0.74	-1.6
3,377,391	-		GFF3322	0.78	+1.1
3,377,407	+		GFF3322	0.79	-3.3
3,377,429	+		GFF3322	0.81	-0.9
3,377,429	+		GFF3322	0.81	-2.2
3,377,429	+		GFF3322	0.81	-2.0
3,377,437	-		GFF3322	0.82	-1.4
3,377,468	+		GFF3322	0.85	-1.3
3,377,481	-		GFF3322	0.86	-1.6
3,377,489	+		GFF3322	0.87	-2.5
3,377,497	-		GFF3322	0.87	-2.3
3,377,506	+		GFF3322	0.88	-2.6
3,377,506	+		GFF3322	0.88	-2.0
3,377,508	-		GFF3322	0.88	-3.5
3,377,512	+		GFF3322	0.89	-2.5
3,377,512	+		GFF3322	0.89	-0.3
3,377,512	+		GFF3322	0.89	-1.0
3,377,513	+		GFF3322	0.89	-0.4
3,377,519	+		GFF3322	0.89	-1.8
3,377,521	-		GFF3322	0.90	-2.5
3,377,538	+				-0.7
3,377,548	+				-1.4
3,377,548	+				-0.1
3,377,555	+				-1.3
3,377,568	-				-0.9
3,377,577	+				-2.0
3,377,577	+				-1.6
3,377,582	+				-1.9
3,377,590	-				-0.7
3,377,590	-				+0.4
3,377,590	-				-1.7
3,377,590	-				-1.9
3,377,590	-				-2.1
3,377,590	-				-2.6
3,377,595	-				-2.2
3,377,609	-				-1.4
3,377,611	-				+0.3
3,377,611	-				-0.6
3,377,643	-				+0.7
3,377,648	-				-0.3
3,377,648	-				-0.5
3,377,648	-				-0.6
3,377,671	+				-1.0
3,377,671	+				-1.4
3,377,671	+				-1.5
3,377,671	+				+0.2
3,377,671	+				-1.0
3,377,671	+				-1.5
3,377,671	+				-1.0
3,377,671	+				-1.0
3,377,671	+				-1.0
3,377,671	+				-0.9
3,377,671	+				-0.4
3,377,671	+				-1.3
3,377,671	+				-0.3
3,377,676	+				-0.1
3,377,679	-				-0.3
3,377,679	-				-0.0
3,377,679	-				-0.6
3,377,679	-				-1.0
3,377,679	-				-1.4
3,377,679	-				-0.9
3,377,679	-				-2.6
3,377,679	-				+0.4
3,377,679	-				-1.8
3,377,679	-				-1.6
3,377,679	-				+0.4
3,377,679	-				-1.7
3,377,681	+				-0.1
3,377,684	-				-2.3
3,377,696	+				-1.2
3,377,721	-				+0.6
3,377,725	-				+0.9
3,377,727	+				-2.6
3,377,746	+		GFF3323	0.12	+2.0
3,377,752	+		GFF3323	0.12	+1.0
3,377,752	+		GFF3323	0.12	-1.9
3,377,769	+		GFF3323	0.14	-1.3
3,377,787	-		GFF3323	0.16	-2.0
3,377,801	+		GFF3323	0.18	-1.0
3,377,841	+		GFF3323	0.22	-0.6
3,377,849	-		GFF3323	0.23	-2.2
3,377,857	-		GFF3323	0.24	-1.8
3,377,857	-		GFF3323	0.24	-0.3
3,377,870	+		GFF3323	0.25	-1.9
3,377,872	-		GFF3323	0.26	-2.0
3,377,901	-		GFF3323	0.29	+1.3
3,377,909	-		GFF3323	0.30	-0.6
3,377,918	+		GFF3323	0.31	-0.7
3,377,949	-		GFF3323	0.34	-1.2
3,377,960	+		GFF3323	0.35	-2.9
3,377,960	+		GFF3323	0.35	-2.4
3,377,960	+		GFF3323	0.35	-0.5
3,377,960	+		GFF3323	0.35	-0.8
3,377,968	-		GFF3323	0.36	+0.1
3,377,968	-		GFF3323	0.36	-1.1
3,377,968	-		GFF3323	0.36	-2.3
3,377,968	-		GFF3323	0.36	-2.0
3,378,126	-		GFF3323	0.54	-0.6
3,378,188	+		GFF3323	0.60	-1.0
3,378,219	+		GFF3323	0.64	-2.0
3,378,244	+		GFF3323	0.67	-1.3
3,378,246	+		GFF3323	0.67	-2.4
3,378,256	+		GFF3323	0.68	-0.6
3,378,256	+		GFF3323	0.68	-1.6
3,378,256	+		GFF3323	0.68	-0.8
3,378,256	+		GFF3323	0.68	-0.6
3,378,258	+		GFF3323	0.68	-2.4
3,378,264	-		GFF3323	0.69	+0.7
3,378,264	-		GFF3323	0.69	+0.4
3,378,264	-		GFF3323	0.69	+0.7
3,378,264	-		GFF3323	0.69	-1.0
3,378,283	-		GFF3323	0.71	-1.6
3,378,322	+		GFF3323	0.75	-1.6
3,378,335	-		GFF3323	0.77	-1.0
3,378,402	+		GFF3323	0.84	-0.6
3,378,411	+		GFF3323	0.85	+0.1
3,378,419	-		GFF3323	0.86	-1.6
3,378,450	+		GFF3323	0.89	-1.6
3,378,459	+				-0.1
3,378,459	-				-1.9
3,378,511	-				-3.0
3,378,512	-				+0.9
3,378,512	-				-0.8
3,378,517	-				-1.0
3,378,517	-				-1.0
3,378,521	+				-0.6
3,378,523	-				+1.1
3,378,529	-				-0.7