Strain Fitness in Sphingobium sp. HT1-2 around GFF3305

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,356,754	+		GFF3302	0.58	+0.3
3,356,794	-		GFF3302	0.66	-0.3
3,356,912	+				-0.8
3,356,929	-				-0.9
3,356,946	+				-0.7
3,356,949	+				+0.8
3,356,958	+				+0.8
3,356,966	+				-0.2
3,356,970	+				-0.7
3,356,987	+		GFF3303	0.15	-1.0
3,356,995	-		GFF3303	0.19	+0.8
3,357,032	+		GFF3303	0.34	-1.7
3,357,048	-		GFF3303	0.41	-0.6
3,357,060	-		GFF3303	0.46	-0.4
3,357,060	-		GFF3303	0.46	+1.5
3,357,062	+		GFF3303	0.47	-0.2
3,357,070	+		GFF3303	0.50	+0.3
3,357,070	-		GFF3303	0.50	-0.7
3,357,070	-		GFF3303	0.50	-0.4
3,357,161	+		GFF3303	0.89	+0.0
3,357,169	-				+0.9
3,357,169	-				-1.2
3,357,210	+				+0.3
3,357,210	+				-1.3
3,357,218	-				-0.3
3,357,218	-				+0.5
3,357,218	-				-1.6
3,357,218	-				-2.0
3,357,218	-				-0.0
3,357,218	-				+1.2
3,357,218	-				-0.4
3,357,248	+				+0.7
3,357,269	+				-0.4
3,357,269	+				-1.4
3,357,269	+				-1.3
3,357,269	+				-1.3
3,357,269	+				+0.0
3,357,277	-				-0.1
3,357,285	+		GFF3304	0.11	+0.3
3,357,293	-		GFF3304	0.13	-0.7
3,357,293	-		GFF3304	0.13	+0.1
3,357,316	+		GFF3304	0.18	+0.5
3,357,316	+		GFF3304	0.18	-0.0
3,357,316	+		GFF3304	0.18	-1.6
3,357,316	+		GFF3304	0.18	-0.4
3,357,316	+		GFF3304	0.18	-0.9
3,357,316	+		GFF3304	0.18	-0.1
3,357,324	-		GFF3304	0.20	-0.9
3,357,324	-		GFF3304	0.20	-0.1
3,357,324	-		GFF3304	0.20	+0.1
3,357,324	-		GFF3304	0.20	-0.1
3,357,326	+		GFF3304	0.20	-1.7
3,357,370	-		GFF3304	0.30	+1.0
3,357,392	+		GFF3304	0.35	-0.1
3,357,394	-		GFF3304	0.36	-0.4
3,357,411	+		GFF3304	0.39	-0.9
3,357,429	-		GFF3304	0.44	+0.1
3,357,429	-		GFF3304	0.44	+0.9
3,357,463	+		GFF3304	0.51	+0.9
3,357,468	+		GFF3304	0.52	+1.2
3,357,469	+		GFF3304	0.53	-0.4
3,357,469	+		GFF3304	0.53	-0.1
3,357,477	-		GFF3304	0.54	-0.0
3,357,486	+		GFF3304	0.56	+0.4
3,357,487	+		GFF3304	0.57	+1.7
3,357,502	+		GFF3304	0.60	+2.9
3,357,513	+		GFF3304	0.63	+1.0
3,357,520	+		GFF3304	0.64	+0.9
3,357,522	-		GFF3304	0.65	-0.3
3,357,522	-		GFF3304	0.65	-0.1
3,357,542	-		GFF3304	0.69	-0.1
3,357,548	+		GFF3304	0.71	+1.5
3,357,556	+		GFF3304	0.72	+1.7
3,357,556	-		GFF3304	0.72	+0.1
3,357,566	-		GFF3304	0.75	+0.7
3,357,577	-		GFF3304	0.77	+0.1
3,357,635	+				-0.1
3,357,635	+				+1.6
3,357,635	+				+1.6
3,357,643	-				-0.7
3,357,643	-				+0.1
3,357,643	-				-1.5
3,357,643	-				-0.4
3,357,643	-				+0.2
3,357,647	-				-0.7
3,357,650	+				-0.5
3,357,654	+				-0.6
3,357,658	-				-0.7
3,357,658	-				-0.4
3,357,662	+				+0.4
3,357,677	+				-2.8
3,357,703	+				+0.5
3,357,708	+				-0.2
3,357,708	+				+0.3
3,357,708	+				+0.3
3,357,713	+				-2.0
3,357,713	+				-0.7
3,357,713	+				-0.5
3,357,713	+				-0.7
3,357,713	+				+0.5
3,357,713	+				-1.0
3,357,713	+				-2.0
3,357,713	+				-0.3
3,357,713	+				+0.1
3,357,713	+				+0.1
3,357,721	-				-0.2
3,357,721	-				+0.1
3,357,721	-				+0.5
3,357,721	-				+0.1
3,357,721	-				+0.4
3,357,721	-				+1.1
3,357,721	-				-1.9
3,357,721	-				+0.2
3,357,725	-				-2.3
3,357,725	-				-1.1
3,357,725	-				-2.4
3,357,745	-				+0.4
3,357,748	+				-3.1
3,357,767	+				-0.4
3,357,767	+				-3.1
3,357,767	+				-1.7
3,357,767	+				-2.9
3,357,767	+				-0.9
3,357,775	-				-2.1
3,357,775	-				-0.1
3,357,879	-		GFF3305	0.15	-1.6
3,357,931	-		GFF3305	0.22	-2.5
3,357,956	-		GFF3305	0.25	-1.4
3,357,964	+		GFF3305	0.26	-3.1
3,357,967	-		GFF3305	0.26	-1.9
3,357,972	-		GFF3305	0.27	-2.5
3,357,972	-		GFF3305	0.27	-0.4
3,357,973	-		GFF3305	0.27	-1.6
3,357,985	+		GFF3305	0.28	-1.1
3,357,985	+		GFF3305	0.28	-1.0
3,358,131	-		GFF3305	0.46	-2.1
3,358,144	-		GFF3305	0.47	-2.0
3,358,149	-		GFF3305	0.48	-1.8
3,358,149	-		GFF3305	0.48	-2.1
3,358,149	-		GFF3305	0.48	-2.1
3,358,149	-		GFF3305	0.48	-1.6
3,358,149	-		GFF3305	0.48	-1.3
3,358,158	-		GFF3305	0.49	-2.6
3,358,188	-		GFF3305	0.53	-1.5
3,358,218	+		GFF3305	0.56	-2.3
3,358,218	+		GFF3305	0.56	+0.3
3,358,218	+		GFF3305	0.56	-0.4
3,358,218	+		GFF3305	0.56	-1.3
3,358,249	+		GFF3305	0.60	-3.7
3,358,264	+		GFF3305	0.62	-1.0
3,358,272	-		GFF3305	0.63	-2.7
3,358,272	-		GFF3305	0.63	-2.0
3,358,326	+		GFF3305	0.69	-1.8
3,358,376	+		GFF3305	0.75	-1.9
3,358,382	+		GFF3305	0.76	+0.1
3,358,383	+		GFF3305	0.76	-1.4
3,358,390	-		GFF3305	0.77	-2.0
3,358,419	-		GFF3305	0.81	-1.5
3,358,468	+		GFF3305	0.86	-1.3
3,358,476	-		GFF3305	0.87	-2.9
3,358,478	-		GFF3305	0.88	-2.5
3,358,515	-				-0.9
3,358,515	-				+1.2
3,358,541	+				+2.1
3,358,547	+				-1.0
3,358,548	+				-0.7
3,358,556	-				+0.3
3,358,556	-				+0.1
3,358,570	+				+0.2
3,358,573	+				-0.6
3,358,581	-				+0.4
3,358,620	+				+0.6
3,358,620	+				+0.2
3,358,627	+				+0.6
3,358,627	+				+0.3
3,358,627	+				-0.6
3,358,627	+				-0.8
3,358,635	-				+0.2
3,358,636	-				-0.5
3,358,647	-				-1.4
3,358,649	-				-2.7
3,358,649	-				-1.5
3,358,657	-				-0.6
3,358,699	+				-1.3
3,358,729	+				+0.1
3,358,729	+				-1.8
3,358,736	+				-0.1
3,358,736	+				-1.1
3,358,736	+				+0.9
3,358,736	+				-1.1
3,358,736	+				-0.1
3,358,736	+				+1.9
3,358,744	-				-1.1
3,358,744	-				-0.5
3,358,744	-				+0.1
3,358,744	-				+0.9
3,358,744	-				-0.3
3,358,744	-				+0.1
3,358,789	+				-1.3
3,358,848	-		GFF3306	0.20	-0.5
3,358,897	+		GFF3306	0.30	+1.5
3,358,905	-		GFF3306	0.31	-0.7
3,358,941	+		GFF3306	0.38	-1.0
3,358,941	+		GFF3306	0.38	-1.1
3,358,944	-		GFF3306	0.38	-0.9
3,358,971	+		GFF3306	0.43	-0.5
3,358,974	-		GFF3306	0.44	+0.1
3,358,981	-		GFF3306	0.45	+0.6
3,358,992	+		GFF3306	0.47	-0.9
3,359,015	-		GFF3306	0.52	+0.1
3,359,027	+		GFF3306	0.54	+0.4
3,359,036	-		GFF3306	0.55	-0.2
3,359,036	-		GFF3306	0.55	+0.1
3,359,036	-		GFF3306	0.55	+0.9
3,359,040	+		GFF3306	0.56	-0.4
3,359,118	-		GFF3306	0.71	+1.6
3,359,130	+		GFF3306	0.73	+0.3
3,359,154	-		GFF3306	0.77	+0.9
3,359,168	-		GFF3306	0.80	-1.3
3,359,184	+		GFF3306	0.83	+0.6
3,359,188	+		GFF3306	0.84	+0.0
3,359,217	-		GFF3306	0.89	-0.2
3,359,234	-				+0.3
3,359,266	+				-0.9
3,359,269	-				-1.6
3,359,269	-				-0.5
3,359,312	-				-1.1
3,359,312	-				+0.8
3,359,349	+		GFF3307	0.17	+1.3
3,359,349	+		GFF3307	0.17	-0.2
3,359,357	-		GFF3307	0.19	-0.5
3,359,357	-		GFF3307	0.19	-1.1
3,359,357	-		GFF3307	0.19	-0.7
3,359,388	+		GFF3307	0.26	-0.7
3,359,421	+		GFF3307	0.34	+1.1
3,359,483	+		GFF3307	0.49	-0.1
3,359,521	+		GFF3307	0.58	-0.0