Strain Fitness in Sphingobium sp. HT1-2 around GFF3304

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,356,239	+		GFF3301	0.81	-0.0
3,356,246	+		GFF3301	0.82	+0.6
3,356,251	+		GFF3301	0.82	+0.4
3,356,251	+		GFF3301	0.82	+0.5
3,356,256	+		GFF3301	0.83	-1.5
3,356,259	-		GFF3301	0.83	+0.5
3,356,264	-		GFF3301	0.83	-0.5
3,356,279	+		GFF3301	0.84	-0.2
3,356,279	+		GFF3301	0.84	-1.9
3,356,291	-		GFF3301	0.85	-1.4
3,356,302	-		GFF3301	0.86	+0.1
3,356,318	-		GFF3301	0.87	-2.1
3,356,318	-		GFF3301	0.87	-0.4
3,356,329	+		GFF3301	0.88	-2.3
3,356,329	+		GFF3301	0.88	-1.6
3,356,329	+		GFF3301	0.88	-0.3
3,356,329	+		GFF3301	0.88	-0.4
3,356,329	+		GFF3301	0.88	-1.2
3,356,329	+		GFF3301	0.88	-1.0
3,356,329	+		GFF3301	0.88	-0.1
3,356,329	+		GFF3301	0.88	+0.4
3,356,329	+		GFF3301	0.88	+0.3
3,356,329	+		GFF3301	0.88	-1.2
3,356,329	+		GFF3301	0.88	-1.3
3,356,329	+		GFF3301	0.88	+0.0
3,356,329	+		GFF3301	0.88	-0.5
3,356,337	-		GFF3301	0.89	+0.6
3,356,337	-		GFF3301	0.89	-2.9
3,356,337	-		GFF3301	0.89	-2.2
3,356,337	-		GFF3301	0.89	+0.1
3,356,337	-		GFF3301	0.89	+0.4
3,356,337	-		GFF3301	0.89	-1.3
3,356,337	-		GFF3301	0.89	-0.9
3,356,337	-		GFF3301	0.89	-1.4
3,356,339	+		GFF3301	0.89	-1.5
3,356,339	+		GFF3301	0.89	-0.5
3,356,339	+		GFF3301	0.89	+0.3
3,356,339	+		GFF3301	0.89	-1.1
3,356,339	+		GFF3301	0.89	-0.9
3,356,339	+		GFF3301	0.89	+0.2
3,356,339	+		GFF3301	0.89	-0.4
3,356,342	-		GFF3301	0.89	+0.1
3,356,342	-		GFF3301	0.89	-1.2
3,356,347	-		GFF3301	0.90	-2.5
3,356,347	-		GFF3301	0.90	-2.1
3,356,348	-		GFF3301	0.90	-2.1
3,356,352	-				+0.2
3,356,364	+				-1.1
3,356,370	+				+0.3
3,356,384	+				-1.5
3,356,391	+				-0.9
3,356,391	+				+0.2
3,356,399	-				-0.0
3,356,418	+				+0.6
3,356,418	+				-0.2
3,356,418	+				-1.0
3,356,418	+				-0.2
3,356,423	+				-1.4
3,356,424	+				+0.1
3,356,426	-				+0.2
3,356,426	-				-1.2
3,356,432	-				-0.6
3,356,434	+				+0.3
3,356,456	+				-0.6
3,356,456	+				+0.5
3,356,456	+				-1.1
3,356,456	+				-1.4
3,356,456	+				+0.9
3,356,456	+				-0.2
3,356,456	+				-0.4
3,356,456	+				-1.9
3,356,456	+				-1.0
3,356,456	+				+0.1
3,356,456	+				-0.7
3,356,456	+				+0.3
3,356,456	+				+0.7
3,356,456	+				-1.8
3,356,456	+				-1.1
3,356,456	+				+0.7
3,356,456	+				+0.0
3,356,456	+				+0.4
3,356,456	+				+0.3
3,356,456	+				-2.2
3,356,456	+				+0.1
3,356,464	+				+0.2
3,356,464	-				-0.8
3,356,464	-				-0.4
3,356,464	-				-1.5
3,356,464	-				-1.2
3,356,464	-				-2.1
3,356,464	-				+1.3
3,356,464	-				-0.7
3,356,464	-				-1.3
3,356,464	-				-2.0
3,356,464	-				+1.1
3,356,464	-				-1.2
3,356,464	-				-1.8
3,356,464	-				+0.6
3,356,464	-				-2.1
3,356,464	-				-1.1
3,356,464	-				+0.1
3,356,464	-				+0.2
3,356,464	-				+0.3
3,356,464	-				-2.2
3,356,487	+				-0.8
3,356,487	+				-0.2
3,356,487	+				+1.1
3,356,487	+				+0.3
3,356,487	+				-0.2
3,356,487	+				+0.8
3,356,487	+				+0.6
3,356,487	+				+0.1
3,356,490	-				-0.4
3,356,493	-				+1.7
3,356,495	-				-1.4
3,356,495	-				-0.2
3,356,495	-				-0.3
3,356,495	-				-1.0
3,356,495	-				-1.6
3,356,495	-				+0.5
3,356,495	-				+0.8
3,356,495	-				-0.3
3,356,495	-				+1.0
3,356,504	+				-1.3
3,356,504	+				-0.1
3,356,504	+				-2.1
3,356,509	+				-2.4
3,356,509	+				-0.3
3,356,512	+				-1.1
3,356,512	-				+0.3
3,356,517	-				+0.4
3,356,522	-				-0.1
3,356,527	+		GFF3302	0.10	-0.2
3,356,527	+		GFF3302	0.10	+0.7
3,356,527	+		GFF3302	0.10	-2.7
3,356,527	+		GFF3302	0.10	+0.1
3,356,535	-		GFF3302	0.12	-0.6
3,356,537	+		GFF3302	0.12	-0.7
3,356,537	+		GFF3302	0.12	-0.7
3,356,537	+		GFF3302	0.12	+0.8
3,356,537	+		GFF3302	0.12	-0.6
3,356,540	-		GFF3302	0.13	+0.6
3,356,542	+		GFF3302	0.13	-0.9
3,356,545	-		GFF3302	0.14	-0.4
3,356,550	-		GFF3302	0.15	-3.2
3,356,621	+		GFF3302	0.30	-0.4
3,356,633	-		GFF3302	0.32	-0.3
3,356,635	+		GFF3302	0.33	+0.4
3,356,661	+		GFF3302	0.38	+1.1
3,356,688	+		GFF3302	0.44	+0.3
3,356,693	+		GFF3302	0.45	+0.5
3,356,708	-		GFF3302	0.48	-2.5
3,356,728	+		GFF3302	0.52	-0.5
3,356,730	-		GFF3302	0.53	-0.7
3,356,742	+		GFF3302	0.55	-1.9
3,356,743	-		GFF3302	0.56	-0.1
3,356,746	+		GFF3302	0.56	+0.0
3,356,750	+		GFF3302	0.57	-0.0
3,356,754	+		GFF3302	0.58	+0.2
3,356,783	+		GFF3302	0.64	-2.3
3,356,788	+		GFF3302	0.65	-0.7
3,356,794	-		GFF3302	0.66	-0.4
3,356,854	-		GFF3302	0.79	-1.0
3,356,865	-		GFF3302	0.81	-1.1
3,356,891	-		GFF3302	0.87	-0.1
3,356,912	+				-1.0
3,356,921	+				+0.6
3,356,929	-				-1.0
3,356,949	+				+0.6
3,356,954	-				-0.5
3,356,958	+				+0.6
3,356,966	+				-0.3
3,356,966	-				-1.0
3,356,987	+		GFF3303	0.15	-1.1
3,356,995	-		GFF3303	0.19	+0.7
3,357,001	-		GFF3303	0.21	-0.5
3,357,032	+		GFF3303	0.34	-1.8
3,357,048	-		GFF3303	0.41	-0.7
3,357,052	+		GFF3303	0.43	-0.2
3,357,060	-		GFF3303	0.46	-0.7
3,357,060	-		GFF3303	0.46	+1.4
3,357,062	+		GFF3303	0.47	-0.3
3,357,062	+		GFF3303	0.47	-0.6
3,357,070	+		GFF3303	0.50	-0.3
3,357,070	-		GFF3303	0.50	-0.9
3,357,070	-		GFF3303	0.50	-0.6
3,357,081	+		GFF3303	0.55	-1.3
3,357,125	-		GFF3303	0.73	-1.8
3,357,125	-		GFF3303	0.73	-0.1
3,357,161	+		GFF3303	0.89	-1.6
3,357,161	+		GFF3303	0.89	-0.2
3,357,169	-				+0.8
3,357,169	-				-0.1
3,357,169	-				-1.4
3,357,195	+				+0.4
3,357,210	+				-0.5
3,357,210	+				+0.4
3,357,210	+				-0.2
3,357,210	+				-0.3
3,357,210	+				-0.5
3,357,210	+				+0.1
3,357,210	+				+0.1
3,357,210	+				-0.3
3,357,210	+				-1.3
3,357,210	+				-0.2
3,357,210	+				-1.3
3,357,210	+				-1.4
3,357,210	+				-1.5
3,357,218	-				-0.2
3,357,218	-				-0.4
3,357,218	-				+0.3
3,357,218	-				-1.7
3,357,218	-				-2.1
3,357,218	-				+0.7
3,357,218	-				+0.1
3,357,218	-				-0.2
3,357,218	-				+1.1
3,357,218	-				-0.5
3,357,218	-				+0.3
3,357,218	-				-0.7
3,357,242	-				-1.7
3,357,248	+				+0.6
3,357,269	+				-0.6
3,357,269	+				-1.6
3,357,269	+				-1.6
3,357,269	+				-1.5
3,357,269	+				-1.4
3,357,269	+				+0.8
3,357,269	+				-0.2
3,357,270	-				-0.5
3,357,276	-				+0.2
3,357,276	-				-0.2
3,357,277	-				-0.3
3,357,277	-				-1.0
3,357,277	-				+0.1
3,357,277	-				-0.1
3,357,277	-				+0.0
3,357,285	+		GFF3304	0.11	+0.2
3,357,285	+		GFF3304	0.11	+0.5
3,357,285	+		GFF3304	0.11	-0.3
3,357,288	+		GFF3304	0.12	-1.1
3,357,293	-		GFF3304	0.13	-0.8
3,357,293	-		GFF3304	0.13	-0.1
3,357,314	-		GFF3304	0.17	-2.1
3,357,316	+		GFF3304	0.18	+0.4
3,357,316	+		GFF3304	0.18	-0.2
3,357,316	+		GFF3304	0.18	-1.7
3,357,316	+		GFF3304	0.18	-0.6
3,357,316	+		GFF3304	0.18	-1.2
3,357,316	+		GFF3304	0.18	-0.2
3,357,316	+		GFF3304	0.18	-1.5
3,357,324	-		GFF3304	0.20	-1.1
3,357,324	-		GFF3304	0.20	-0.3
3,357,324	-		GFF3304	0.20	-0.1
3,357,324	-		GFF3304	0.20	-0.3
3,357,324	-		GFF3304	0.20	-2.1
3,357,324	-		GFF3304	0.20	-1.2
3,357,324	-		GFF3304	0.20	-1.1
3,357,324	-		GFF3304	0.20	+0.2
3,357,326	+		GFF3304	0.20	-1.9
3,357,344	-		GFF3304	0.24	-0.9
3,357,357	+		GFF3304	0.27	+0.1
3,357,368	-		GFF3304	0.30	-0.9
3,357,370	-		GFF3304	0.30	+0.8
3,357,384	+		GFF3304	0.33	-1.0
3,357,392	+		GFF3304	0.35	-0.2
3,357,394	-		GFF3304	0.36	+0.0
3,357,394	-		GFF3304	0.36	-0.6
3,357,411	+		GFF3304	0.39	-1.1
3,357,411	+		GFF3304	0.39	-1.8
3,357,418	+		GFF3304	0.41	+0.8
3,357,429	-		GFF3304	0.44	-0.1
3,357,436	-		GFF3304	0.45	+0.8
3,357,458	-		GFF3304	0.50	+0.2
3,357,463	+		GFF3304	0.51	+0.7
3,357,468	+		GFF3304	0.52	+1.0
3,357,469	+		GFF3304	0.53	-0.8
3,357,469	+		GFF3304	0.53	-2.4
3,357,469	+		GFF3304	0.53	-0.6
3,357,469	+		GFF3304	0.53	-0.3
3,357,477	-		GFF3304	0.54	-0.2
3,357,477	-		GFF3304	0.54	+1.3
3,357,477	-		GFF3304	0.54	-0.2
3,357,486	+		GFF3304	0.56	+0.2
3,357,487	+		GFF3304	0.57	+1.6
3,357,513	+		GFF3304	0.63	+0.8
3,357,514	+		GFF3304	0.63	-0.5
3,357,517	-		GFF3304	0.63	-1.1
3,357,522	-		GFF3304	0.65	-0.5
3,357,522	-		GFF3304	0.65	+0.3
3,357,522	-		GFF3304	0.65	-0.6
3,357,522	-		GFF3304	0.65	-1.3
3,357,522	-		GFF3304	0.65	-1.3
3,357,542	-		GFF3304	0.69	-0.3
3,357,548	+		GFF3304	0.71	+1.3
3,357,556	+		GFF3304	0.72	+1.6
3,357,556	-		GFF3304	0.72	-0.1
3,357,556	-		GFF3304	0.72	-0.4
3,357,566	-		GFF3304	0.75	+0.6
3,357,577	-		GFF3304	0.77	-0.1
3,357,598	-		GFF3304	0.82	+0.0
3,357,605	-		GFF3304	0.83	-0.4
3,357,635	+				-0.3
3,357,635	+				+1.5
3,357,643	-				-0.8
3,357,643	-				-0.1
3,357,643	-				-1.6
3,357,643	-				-0.6
3,357,643	-				-0.0
3,357,647	-				-0.8
3,357,650	+				-1.8
3,357,650	+				-0.7
3,357,658	-				-0.5
3,357,662	+				+0.2
3,357,670	-				+0.1
3,357,677	+				-3.0
3,357,701	-				-1.7
3,357,703	+				+0.3
3,357,708	+				-0.4
3,357,708	+				-0.4
3,357,708	+				-2.5
3,357,708	+				+0.1
3,357,708	+				+0.1
3,357,713	+				+0.4
3,357,713	+				-2.2
3,357,713	+				-0.0
3,357,713	+				-0.8
3,357,713	+				-0.6
3,357,713	+				-0.9
3,357,713	+				-0.7
3,357,713	+				+0.3
3,357,713	+				-1.2
3,357,713	+				-2.1
3,357,713	+				-0.5
3,357,713	+				-0.1
3,357,713	+				-1.1
3,357,713	+				-1.6
3,357,713	+				-1.3
3,357,713	+				-0.1
3,357,713	+				+0.3
3,357,717	+				-1.8
3,357,721	-				+0.3
3,357,721	-				+0.7
3,357,721	-				-0.4
3,357,721	-				-0.5
3,357,721	-				-0.4
3,357,721	-				-0.1
3,357,721	-				+0.3
3,357,721	-				-0.1
3,357,721	-				+0.2
3,357,721	-				+1.4
3,357,721	-				+0.3
3,357,721	-				-2.1
3,357,721	-				-0.5
3,357,721	-				-1.3
3,357,721	-				+0.0
3,357,721	-				-0.1
3,357,721	-				+0.4
3,357,721	-				-0.3
3,357,721	-				-0.6
3,357,721	-				+0.1
3,357,721	-				-2.1
3,357,721	-				+0.5
3,357,725	-				-2.2
3,357,725	-				-2.5
3,357,725	-				-1.9
3,357,725	-				-1.3
3,357,725	-				-2.6
3,357,730	-				+0.5
3,357,745	-				+0.2
3,357,747	+				+1.0
3,357,748	+				-3.2
3,357,748	+				+0.4
3,357,760	-				+1.0
3,357,767	+				-2.6
3,357,767	+				-0.5
3,357,767	+				-3.3
3,357,767	+				-1.8
3,357,767	+				-3.1
3,357,767	+				-2.2
3,357,772	+				-2.1
3,357,775	-				-2.3
3,357,780	-				-1.7
3,357,815	-				-1.4
3,357,855	-		GFF3305	0.12	-1.4
3,357,855	-		GFF3305	0.12	-1.8
3,357,879	-		GFF3305	0.15	-1.7
3,357,879	-		GFF3305	0.15	-1.7
3,357,931	-		GFF3305	0.22	-2.7
3,357,955	+		GFF3305	0.25	-1.2
3,357,956	-		GFF3305	0.25	-1.5
3,357,956	-		GFF3305	0.25	-1.7
3,357,961	-		GFF3305	0.25	-2.1
3,357,963	-		GFF3305	0.25	-1.1
3,357,964	+		GFF3305	0.26	-3.3
3,357,965	+		GFF3305	0.26	-1.8
3,357,967	-		GFF3305	0.26	-2.1
3,357,972	-		GFF3305	0.27	-2.6
3,357,973	-		GFF3305	0.27	-1.7
3,357,975	+		GFF3305	0.27	-1.5
3,357,985	+		GFF3305	0.28	-1.3
3,357,985	+		GFF3305	0.28	-1.2
3,357,985	+		GFF3305	0.28	-2.5
3,358,117	-		GFF3305	0.44	-1.8
3,358,122	+		GFF3305	0.45	-1.6
3,358,122	+		GFF3305	0.45	-1.8
3,358,131	-		GFF3305	0.46	-2.3
3,358,132	-		GFF3305	0.46	-1.2
3,358,141	+		GFF3305	0.47	-2.1
3,358,141	+		GFF3305	0.47	-1.4
3,358,141	+		GFF3305	0.47	-2.0
3,358,144	-		GFF3305	0.47	-2.2
3,358,149	-		GFF3305	0.48	-2.0
3,358,149	-		GFF3305	0.48	-2.3
3,358,149	-		GFF3305	0.48	-2.3
3,358,149	-		GFF3305	0.48	-1.4
3,358,149	-		GFF3305	0.48	-1.7
3,358,149	-		GFF3305	0.48	-1.4
3,358,158	-		GFF3305	0.49	-2.8
3,358,188	-		GFF3305	0.53	-1.6
3,358,208	+		GFF3305	0.55	-2.3
3,358,218	+		GFF3305	0.56	-2.4
3,358,218	+		GFF3305	0.56	-1.4
3,358,249	+		GFF3305	0.60	-3.9
3,358,249	+		GFF3305	0.60	-2.4
3,358,249	-		GFF3305	0.60	-2.2
3,358,262	-		GFF3305	0.62	-3.4
3,358,264	+		GFF3305	0.62	-1.2
3,358,264	+		GFF3305	0.62	-2.3
3,358,264	+		GFF3305	0.62	-1.6
3,358,264	+		GFF3305	0.62	-1.8
3,358,267	-		GFF3305	0.62	-2.0
3,358,269	+		GFF3305	0.62	-1.2
3,358,272	-		GFF3305	0.63	-2.9
3,358,272	-		GFF3305	0.63	-2.6
3,358,272	-		GFF3305	0.63	-2.2
3,358,272	-		GFF3305	0.63	-1.4
3,358,272	-		GFF3305	0.63	-2.3
3,358,274	+		GFF3305	0.63	-1.9
3,358,277	-		GFF3305	0.63	-2.0
3,358,298	+		GFF3305	0.66	-3.0
3,358,304	+		GFF3305	0.67	-1.8
3,358,306	-		GFF3305	0.67	-2.0
3,358,326	+		GFF3305	0.69	-2.0
3,358,328	-		GFF3305	0.70	-1.4
3,358,376	+		GFF3305	0.75	-2.1
3,358,376	-		GFF3305	0.75	-2.4
3,358,383	+		GFF3305	0.76	-1.5
3,358,390	-		GFF3305	0.77	-2.2
3,358,391	-		GFF3305	0.77	-2.7
3,358,419	-		GFF3305	0.81	-1.6
3,358,441	+		GFF3305	0.83	-1.5
3,358,468	+		GFF3305	0.86	-1.4
3,358,476	-		GFF3305	0.87	-3.1
3,358,478	-		GFF3305	0.88	-2.6
3,358,483	-		GFF3305	0.88	-2.5
3,358,515	-				-0.9
3,358,515	-				+1.1
3,358,515	-				+1.0
3,358,515	-				+0.4
3,358,547	+				-1.2
3,358,548	+				-0.9
3,358,549	-				-1.0
3,358,555	-				-0.9
3,358,555	-				-1.2
3,358,555	-				-1.3
3,358,556	-				-0.1
3,358,570	+				+0.0
3,358,573	+				-0.8
3,358,574	+				+0.6
3,358,582	-				+0.1
3,358,620	+				+0.4
3,358,620	+				+0.0
3,358,627	+				+0.4
3,358,627	+				+0.1
3,358,627	+				-0.1
3,358,627	+				-0.7
3,358,627	+				-1.0
3,358,628	-				-0.7
3,358,635	-				+0.2
3,358,635	-				+0.0
3,358,636	-				-0.6
3,358,647	-				-1.5
3,358,649	-				-2.8
3,358,649	-				-1.6
3,358,652	-				-1.5
3,358,657	-				-0.7
3,358,662	-				+0.5