Strain Fitness in Sphingobium sp. HT1-2 around GFF3277

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,330,640	+		GFF3276	0.58	-0.3
3,330,672	+		GFF3276	0.60	+0.8
3,330,672	+		GFF3276	0.60	-0.5
3,330,677	+		GFF3276	0.60	-1.6
3,330,677	+		GFF3276	0.60	-0.7
3,330,680	-		GFF3276	0.60	+0.6
3,330,703	-		GFF3276	0.61	-0.0
3,330,736	+		GFF3276	0.63	-0.4
3,330,736	+		GFF3276	0.63	-0.0
3,330,744	-		GFF3276	0.63	-1.2
3,330,744	-		GFF3276	0.63	-0.1
3,330,811	-		GFF3276	0.67	-0.4
3,330,831	+		GFF3276	0.68	+0.3
3,330,848	+		GFF3276	0.69	+0.3
3,330,870	-		GFF3276	0.70	+0.9
3,330,879	-		GFF3276	0.70	-0.6
3,330,901	+		GFF3276	0.71	+0.4
3,330,903	+		GFF3276	0.71	-0.6
3,330,917	-		GFF3276	0.72	+0.3
3,330,924	+		GFF3276	0.73	-0.6
3,330,924	+		GFF3276	0.73	+0.1
3,330,924	+		GFF3276	0.73	+0.5
3,330,924	+		GFF3276	0.73	-0.6
3,330,924	+		GFF3276	0.73	+0.4
3,330,932	-		GFF3276	0.73	-0.0
3,330,937	+		GFF3276	0.73	-1.3
3,330,945	-		GFF3276	0.74	-1.2
3,330,945	-		GFF3276	0.74	+1.2
3,330,945	-		GFF3276	0.74	+2.0
3,330,945	-		GFF3276	0.74	-1.5
3,330,945	-		GFF3276	0.74	+0.6
3,330,955	+		GFF3276	0.74	-0.2
3,330,955	+		GFF3276	0.74	+0.6
3,330,955	+		GFF3276	0.74	-0.1
3,330,955	+		GFF3276	0.74	+0.5
3,330,962	+		GFF3276	0.75	+1.1
3,330,963	-		GFF3276	0.75	-2.0
3,330,963	-		GFF3276	0.75	-1.0
3,330,970	-		GFF3276	0.75	-1.7
3,330,981	-		GFF3276	0.76	-0.1
3,330,990	+		GFF3276	0.76	-2.8
3,331,007	+		GFF3276	0.77	+1.3
3,331,015	-		GFF3276	0.77	+0.5
3,331,020	-		GFF3276	0.78	+1.1
3,331,022	+		GFF3276	0.78	-0.6
3,331,022	+		GFF3276	0.78	+0.4
3,331,022	+		GFF3276	0.78	+1.0
3,331,030	-		GFF3276	0.78	+0.2
3,331,030	-		GFF3276	0.78	+0.8
3,331,030	-		GFF3276	0.78	-0.3
3,331,030	-		GFF3276	0.78	+1.4
3,331,030	-		GFF3276	0.78	-0.2
3,331,041	+		GFF3276	0.79	+0.1
3,331,067	-		GFF3276	0.80	-0.9
3,331,078	-		GFF3276	0.80	+0.1
3,331,140	+		GFF3276	0.84	-0.1
3,331,153	+		GFF3276	0.84	-1.2
3,331,160	-		GFF3276	0.85	+0.5
3,331,160	-		GFF3276	0.85	-0.9
3,331,160	-		GFF3276	0.85	-0.3
3,331,176	+		GFF3276	0.86	-1.8
3,331,184	-		GFF3276	0.86	+0.3
3,331,194	-		GFF3276	0.86	+0.3
3,331,243	-		GFF3276	0.89	+0.4
3,331,277	-				-0.6
3,331,279	+				-0.9
3,331,287	-				-0.5
3,331,297	-				+0.0
3,331,345	+				-0.9
3,331,369	+				+0.3
3,331,413	+				-0.8
3,331,425	+				-1.0
3,331,433	-				-1.3
3,331,460	-				-0.1
3,331,494	-				-0.5
3,331,494	-				-0.5
3,331,550	-				-0.3
3,331,563	+				+0.1
3,331,629	-				-2.8
3,331,661	+				-2.3
3,331,661	+				-4.0
3,331,662	+				-2.4
3,331,676	+				-3.2
3,331,680	+				-0.5
3,331,687	+				-1.0
3,331,693	-				-2.0
3,331,699	-				-3.0
3,331,708	+				-3.7
3,331,716	-				-3.3
3,331,716	-				-2.3
3,331,726	-				-0.6
3,331,756	-				-1.8
3,331,777	+		GFF3277	0.10	-3.0
3,331,777	+		GFF3277	0.10	-3.1
3,331,817	+		GFF3277	0.13	-2.4
3,331,825	-		GFF3277	0.13	-0.4
3,331,832	+		GFF3277	0.13	-1.4
3,331,839	+		GFF3277	0.14	-0.2
3,331,840	-		GFF3277	0.14	+0.1
3,331,841	-		GFF3277	0.14	-0.2
3,331,865	+		GFF3277	0.16	-1.5
3,331,865	+		GFF3277	0.16	-2.1
3,331,865	+		GFF3277	0.16	-3.0
3,331,870	+		GFF3277	0.16	-1.3
3,331,934	+		GFF3277	0.20	+0.0
3,331,934	+		GFF3277	0.20	-1.0
3,331,934	+		GFF3277	0.20	-0.7
3,331,934	+		GFF3277	0.20	-0.2
3,331,934	+		GFF3277	0.20	-1.8
3,331,942	-		GFF3277	0.20	-2.8
3,331,942	-		GFF3277	0.20	-1.6
3,331,942	-		GFF3277	0.20	-2.7
3,331,942	-		GFF3277	0.20	-2.6
3,331,942	-		GFF3277	0.20	-1.8
3,331,943	-		GFF3277	0.20	-1.5
3,331,966	-		GFF3277	0.22	-0.7
3,332,130	-		GFF3277	0.32	-1.0
3,332,161	-		GFF3277	0.34	-1.9
3,332,255	+		GFF3277	0.40	-1.3
3,332,255	+		GFF3277	0.40	-1.6
3,332,255	+		GFF3277	0.40	-0.7
3,332,255	+		GFF3277	0.40	-1.9
3,332,255	+		GFF3277	0.40	-0.2
3,332,255	+		GFF3277	0.40	-2.9
3,332,255	+		GFF3277	0.40	-0.7
3,332,258	-		GFF3277	0.40	-1.4
3,332,260	+		GFF3277	0.40	-2.0
3,332,263	-		GFF3277	0.41	-2.8
3,332,263	-		GFF3277	0.41	-2.6
3,332,263	-		GFF3277	0.41	-3.8
3,332,268	-		GFF3277	0.41	-0.2
3,332,270	+		GFF3277	0.41	+0.4
3,332,270	+		GFF3277	0.41	-1.2
3,332,278	-		GFF3277	0.41	-0.4
3,332,278	-		GFF3277	0.41	-2.1
3,332,278	-		GFF3277	0.41	-1.6
3,332,278	-		GFF3277	0.41	-2.6
3,332,301	+		GFF3277	0.43	-1.4
3,332,335	+		GFF3277	0.45	-1.6
3,332,335	+		GFF3277	0.45	-2.7
3,332,343	-		GFF3277	0.46	-1.1
3,332,343	-		GFF3277	0.46	-1.8
3,332,343	-		GFF3277	0.46	-1.2
3,332,343	-		GFF3277	0.46	-2.0
3,332,352	-		GFF3277	0.46	-1.3
3,332,353	-		GFF3277	0.46	-2.1
3,332,353	-		GFF3277	0.46	-1.3
3,332,353	-		GFF3277	0.46	-2.4
3,332,353	-		GFF3277	0.46	-1.6
3,332,354	+		GFF3277	0.46	-2.4
3,332,355	+		GFF3277	0.46	-1.6
3,332,368	-		GFF3277	0.47	-1.0
3,332,370	-		GFF3277	0.47	-2.5
3,332,375	-		GFF3277	0.48	-1.6
3,332,383	+		GFF3277	0.48	-0.6
3,332,384	+		GFF3277	0.48	-1.5
3,332,414	+		GFF3277	0.50	-3.4
3,332,452	+		GFF3277	0.52	-2.0
3,332,469	-		GFF3277	0.53	-3.2
3,332,506	-		GFF3277	0.56	-2.6
3,332,506	-		GFF3277	0.56	-1.7
3,332,525	-		GFF3277	0.57	-2.3
3,332,543	-		GFF3277	0.58	-2.6
3,332,559	+		GFF3277	0.59	-1.9
3,332,595	-		GFF3277	0.61	-1.7
3,332,709	+		GFF3277	0.69	-0.9
3,332,719	+		GFF3277	0.69	-2.5
3,332,754	+		GFF3277	0.71	-1.9
3,332,760	+		GFF3277	0.72	-1.6
3,332,768	-		GFF3277	0.72	-2.3
3,332,796	+		GFF3277	0.74	-1.7
3,332,796	+		GFF3277	0.74	-1.6
3,332,812	-		GFF3277	0.75	-1.9
3,332,837	+		GFF3277	0.77	-1.7
3,332,845	-		GFF3277	0.77	-1.5
3,332,863	-		GFF3277	0.78	+0.3
3,332,874	+		GFF3277	0.79	-0.7
3,332,934	+		GFF3277	0.83	-3.1
3,332,934	+		GFF3277	0.83	-1.7
3,332,942	-		GFF3277	0.83	-1.6
3,332,942	-		GFF3277	0.83	-2.6
3,332,942	-		GFF3277	0.83	-2.4
3,332,945	-		GFF3277	0.83	-0.7
3,332,979	+		GFF3277	0.85	-2.1
3,332,998	+		GFF3277	0.87	-1.7
3,333,084	+				-1.5
3,333,102	+				-2.2
3,333,102	+				-1.0
3,333,177	+				-1.3
3,333,184	-				-2.2
3,333,185	-				-2.3
3,333,218	-				+0.3
3,333,351	+				+0.7
3,333,364	-				-1.0
3,333,394	-				-0.2
3,333,394	-				+0.1
3,333,405	-				-1.8
3,333,405	-				-0.3
3,333,471	+				-0.4
3,333,472	+		GFF3279	0.10	-0.1
3,333,488	+		GFF3279	0.15	-0.9
3,333,541	+		GFF3279	0.31	-0.8
3,333,583	+		GFF3279	0.44	+1.7
3,333,583	+		GFF3279	0.44	+0.8
3,333,591	-		GFF3279	0.46	-0.4
3,333,601	+		GFF3279	0.49	+0.6
3,333,606	+		GFF3279	0.50	+0.3
3,333,609	-		GFF3279	0.51	+1.0
3,333,619	-		GFF3279	0.54	-0.4
3,333,633	-		GFF3279	0.59	-1.4
3,333,669	-		GFF3279	0.69	-0.9
3,333,678	-		GFF3279	0.72	-0.4
3,333,717	+		GFF3279	0.84	+0.2
3,333,725	-		GFF3279	0.86	-1.0
3,333,725	-		GFF3279	0.86	-2.2
3,333,725	-		GFF3279	0.86	-0.7
3,333,725	-		GFF3279	0.86	-0.2
3,333,759	+				-0.4
3,333,772	-				-0.2
3,333,772	-				-0.4
3,333,828	-				-1.8
3,333,833	+				-0.8
3,333,833	+				-1.3
3,333,833	-				-1.4
3,333,845	+				+0.8
3,333,856	+				-0.2
3,333,865	+				+1.1
3,333,893	+				-0.2
3,333,893	+				+0.5
3,333,901	-				+0.7
3,333,970	+				+1.3
3,333,986	+				-0.6
3,333,986	+				+0.7
3,333,999	-				-0.2
3,334,096	+				-0.0
3,334,161	+		GFF3280	0.14	-0.4
3,334,174	-		GFF3280	0.15	+0.1
3,334,203	-		GFF3280	0.17	+0.8