Strain Fitness in Sphingobium sp. HT1-2 around GFF3263

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,316,904	-				-0.5
3,317,375	+		GFF3261	0.71	-1.2
3,317,383	-		GFF3261	0.72	-1.8
3,317,419	-		GFF3261	0.77	-0.8
3,317,489	+		GFF3261	0.88	-0.5
3,317,495	+		GFF3261	0.89	+0.5
3,317,495	+		GFF3261	0.89	+0.0
3,317,495	+		GFF3261	0.89	-0.4
3,317,495	+		GFF3261	0.89	+0.5
3,317,495	+		GFF3261	0.89	-0.1
3,317,495	+		GFF3261	0.89	-1.2
3,317,495	+		GFF3261	0.89	-2.2
3,317,495	+		GFF3261	0.89	+0.1
3,317,495	+		GFF3261	0.89	-0.7
3,317,495	+		GFF3261	0.89	+0.0
3,317,495	+		GFF3261	0.89	-0.1
3,317,495	+		GFF3261	0.89	-1.8
3,317,495	+		GFF3261	0.89	-0.5
3,317,495	+		GFF3261	0.89	-0.5
3,317,495	+		GFF3261	0.89	+0.5
3,317,503	-		GFF3261	0.90	+0.3
3,317,503	-		GFF3261	0.90	-1.3
3,317,503	-		GFF3261	0.90	-0.3
3,317,503	-		GFF3261	0.90	-1.3
3,317,503	-		GFF3261	0.90	-1.9
3,317,503	-		GFF3261	0.90	-2.5
3,317,503	-		GFF3261	0.90	-0.2
3,317,503	-		GFF3261	0.90	-0.6
3,317,521	+				-0.5
3,317,529	-				-0.1
3,317,537	-				-2.6
3,317,552	+				-0.2
3,317,552	+				-1.5
3,317,552	+				-0.4
3,317,552	+				-0.4
3,317,552	+				-2.3
3,317,557	+				+0.2
3,317,557	+				-1.1
3,317,557	+				-1.7
3,317,557	+				-2.1
3,317,557	+				-0.6
3,317,560	-				-0.6
3,317,560	-				-1.7
3,317,565	-				-1.6
3,317,565	-				-0.3
3,317,565	-				-0.4
3,317,580	-				-0.2
3,317,623	-				-0.4
3,317,652	-				+0.8
3,317,652	-				-0.2
3,317,733	-		GFF3262	0.34	-0.5
3,317,740	+		GFF3262	0.36	-2.0
3,317,750	+		GFF3262	0.40	+0.4
3,317,750	+		GFF3262	0.40	+0.9
3,317,750	+		GFF3262	0.40	-0.9
3,317,750	+		GFF3262	0.40	+0.9
3,317,773	-		GFF3262	0.49	+0.3
3,317,773	-		GFF3262	0.49	+0.5
3,317,777	+		GFF3262	0.51	-0.9
3,317,782	+		GFF3262	0.53	+1.4
3,317,797	+		GFF3262	0.59	-0.1
3,317,797	+		GFF3262	0.59	-1.8
3,317,797	+		GFF3262	0.59	-1.2
3,317,797	+		GFF3262	0.59	+0.4
3,317,826	-		GFF3262	0.70	+1.5
3,317,828	+		GFF3262	0.71	+0.7
3,317,870	+		GFF3262	0.87	-0.1
3,317,870	+		GFF3262	0.87	-0.2
3,317,870	+		GFF3262	0.87	+0.1
3,317,870	+		GFF3262	0.87	+1.1
3,317,870	+		GFF3262	0.87	+0.1
3,317,870	+		GFF3262	0.87	-0.1
3,317,873	-		GFF3262	0.88	+1.0
3,317,878	-				-1.5
3,317,878	-				+0.0
3,317,878	-				+1.2
3,317,878	-				+0.4
3,317,878	-				-0.1
3,317,892	+				+1.4
3,317,905	-				+0.8
3,317,905	-				-0.5
3,317,907	+				-1.3
3,317,915	-				+0.0
3,317,952	+				-1.2
3,317,954	+				-1.2
3,317,957	-				+0.9
3,317,959	+				-1.5
3,317,962	-				-0.5
3,317,966	+				-1.8
3,317,967	-				+0.2
3,317,967	-				+0.3
3,317,967	-				+0.2
3,317,967	-				-0.4
3,317,979	-				+1.5
3,318,000	-				+1.0
3,318,027	-				+0.5
3,318,067	+				-0.3
3,318,074	-				-0.9
3,318,076	+				+0.4
3,318,076	+				-0.2
3,318,084	+				+2.2
3,318,084	+				+0.1
3,318,084	+				-1.6
3,318,091	-		GFF3263	0.10	+0.4
3,318,092	-		GFF3263	0.10	-0.3
3,318,092	-		GFF3263	0.10	+0.3
3,318,100	+		GFF3263	0.11	-0.2
3,318,105	+		GFF3263	0.11	+0.8
3,318,122	+		GFF3263	0.12	+1.0
3,318,126	-		GFF3263	0.12	-1.6
3,318,129	+		GFF3263	0.12	-0.1
3,318,129	+		GFF3263	0.12	+1.3
3,318,153	+		GFF3263	0.14	-1.6
3,318,153	+		GFF3263	0.14	-0.9
3,318,153	+		GFF3263	0.14	+0.5
3,318,209	+		GFF3263	0.17	-0.7
3,318,209	+		GFF3263	0.17	+0.7
3,318,209	+		GFF3263	0.17	-0.7
3,318,217	-		GFF3263	0.17	-1.9
3,318,217	-		GFF3263	0.17	-0.4
3,318,237	+		GFF3263	0.18	-0.7
3,318,242	+		GFF3263	0.18	+0.1
3,318,245	-		GFF3263	0.19	-0.4
3,318,245	-		GFF3263	0.19	+0.1
3,318,250	-		GFF3263	0.19	+1.0
3,318,252	+		GFF3263	0.19	-1.2
3,318,260	-		GFF3263	0.19	+0.2
3,318,265	+		GFF3263	0.20	-0.9
3,318,265	+		GFF3263	0.20	+0.2
3,318,265	+		GFF3263	0.20	+0.8
3,318,265	+		GFF3263	0.20	+1.1
3,318,273	-		GFF3263	0.20	+1.0
3,318,273	-		GFF3263	0.20	+0.7
3,318,273	-		GFF3263	0.20	+0.4
3,318,294	+		GFF3263	0.21	-0.2
3,318,302	-		GFF3263	0.22	-1.8
3,318,327	+		GFF3263	0.23	-0.9
3,318,336	+		GFF3263	0.23	-0.8
3,318,341	+		GFF3263	0.24	-0.3
3,318,344	-		GFF3263	0.24	-0.6
3,318,351	+		GFF3263	0.24	+0.1
3,318,351	-		GFF3263	0.24	-0.8
3,318,354	-		GFF3263	0.24	-1.0
3,318,372	+		GFF3263	0.25	-0.6
3,318,372	+		GFF3263	0.25	+0.1
3,318,372	+		GFF3263	0.25	+0.1
3,318,380	-		GFF3263	0.26	+1.3
3,318,380	-		GFF3263	0.26	-0.5
3,318,380	-		GFF3263	0.26	-0.2
3,318,380	-		GFF3263	0.26	+0.7
3,318,382	+		GFF3263	0.26	+0.4
3,318,382	+		GFF3263	0.26	+0.0
3,318,382	+		GFF3263	0.26	-2.3
3,318,382	+		GFF3263	0.26	+0.8
3,318,390	-		GFF3263	0.26	-0.1
3,318,390	-		GFF3263	0.26	-2.1
3,318,390	-		GFF3263	0.26	+1.0
3,318,390	-		GFF3263	0.26	-0.3
3,318,401	+		GFF3263	0.27	+1.1
3,318,401	+		GFF3263	0.27	-0.7
3,318,426	-		GFF3263	0.28	-0.6
3,318,430	-		GFF3263	0.29	-1.5
3,318,529	+		GFF3263	0.34	-0.9
3,318,531	+		GFF3263	0.34	-0.3
3,318,536	+		GFF3263	0.34	+0.9
3,318,549	-		GFF3263	0.35	-0.5
3,318,563	+		GFF3263	0.36	-0.6
3,318,563	+		GFF3263	0.36	-0.4
3,318,570	+		GFF3263	0.36	+0.5
3,318,576	+		GFF3263	0.36	+0.8
3,318,578	-		GFF3263	0.37	-1.4
3,318,581	+		GFF3263	0.37	+0.2
3,318,584	-		GFF3263	0.37	-1.2
3,318,584	-		GFF3263	0.37	+0.8
3,318,586	+		GFF3263	0.37	+0.2
3,318,586	-		GFF3263	0.37	+0.0
3,318,595	+		GFF3263	0.37	+0.4
3,318,604	+		GFF3263	0.38	-0.3
3,318,612	-		GFF3263	0.38	-0.0
3,318,622	-		GFF3263	0.39	-0.1
3,318,653	+		GFF3263	0.41	-1.0
3,318,661	-		GFF3263	0.41	+1.4
3,318,673	-		GFF3263	0.42	+0.7
3,318,678	-		GFF3263	0.42	-0.1
3,318,680	+		GFF3263	0.42	+1.3
3,318,682	+		GFF3263	0.42	-0.9
3,318,682	+		GFF3263	0.42	-0.3
3,318,690	-		GFF3263	0.43	-0.0
3,318,690	-		GFF3263	0.43	-0.3
3,318,690	-		GFF3263	0.43	+0.5
3,318,690	-		GFF3263	0.43	+0.3
3,318,707	+		GFF3263	0.43	-0.4
3,318,715	-		GFF3263	0.44	-0.8
3,318,721	+		GFF3263	0.44	+0.2
3,318,729	-		GFF3263	0.45	-2.2
3,318,729	-		GFF3263	0.45	+0.2
3,318,735	-		GFF3263	0.45	+0.4
3,318,760	-		GFF3263	0.46	+0.9
3,318,789	+		GFF3263	0.48	-2.5
3,318,824	-		GFF3263	0.50	+0.7
3,318,883	-		GFF3263	0.53	-0.2
3,318,895	+		GFF3263	0.54	-1.5
3,318,901	-		GFF3263	0.54	+0.3
3,318,902	+		GFF3263	0.54	-0.7
3,318,903	-		GFF3263	0.54	+0.3
3,318,903	-		GFF3263	0.54	-1.7
3,318,903	-		GFF3263	0.54	-0.7
3,318,917	+		GFF3263	0.55	-0.1
3,318,917	+		GFF3263	0.55	-0.2
3,318,925	-		GFF3263	0.55	-1.5
3,318,925	-		GFF3263	0.55	-0.5
3,318,925	-		GFF3263	0.55	+1.2
3,318,927	-		GFF3263	0.55	-1.9
3,318,953	+		GFF3263	0.57	-0.3
3,318,956	-		GFF3263	0.57	-1.9
3,318,961	-		GFF3263	0.57	-0.2
3,318,961	-		GFF3263	0.57	-0.6
3,318,974	+		GFF3263	0.58	-1.8
3,318,989	+		GFF3263	0.59	-0.7
3,318,997	-		GFF3263	0.59	+0.4
3,318,999	+		GFF3263	0.59	-0.6
3,318,999	+		GFF3263	0.59	-0.0
3,319,007	-		GFF3263	0.60	-3.5
3,319,007	-		GFF3263	0.60	+0.1
3,319,022	+		GFF3263	0.60	+0.2
3,319,022	+		GFF3263	0.60	-0.3
3,319,027	+		GFF3263	0.61	-1.3
3,319,036	-		GFF3263	0.61	+0.9
3,319,056	+		GFF3263	0.62	+1.2
3,319,056	+		GFF3263	0.62	+1.4
3,319,056	+		GFF3263	0.62	-0.4
3,319,056	+		GFF3263	0.62	-1.6
3,319,056	+		GFF3263	0.62	-0.3
3,319,056	+		GFF3263	0.62	-0.7
3,319,064	-		GFF3263	0.63	-0.3
3,319,064	-		GFF3263	0.63	-0.7
3,319,064	-		GFF3263	0.63	-0.1
3,319,064	-		GFF3263	0.63	-1.7
3,319,083	+		GFF3263	0.64	-0.5
3,319,083	+		GFF3263	0.64	+0.8
3,319,083	+		GFF3263	0.64	-0.7
3,319,083	+		GFF3263	0.64	-0.8
3,319,083	+		GFF3263	0.64	+1.4
3,319,083	+		GFF3263	0.64	-1.2
3,319,083	+		GFF3263	0.64	-0.9
3,319,088	+		GFF3263	0.64	+0.2
3,319,091	-		GFF3263	0.64	+0.2
3,319,093	+		GFF3263	0.64	+1.5
3,319,093	+		GFF3263	0.64	-1.8
3,319,099	+		GFF3263	0.65	+0.5
3,319,099	+		GFF3263	0.65	+0.6
3,319,099	+		GFF3263	0.65	-1.6
3,319,099	+		GFF3263	0.65	-0.4
3,319,107	-		GFF3263	0.65	+0.4
3,319,160	+		GFF3263	0.68	-0.8
3,319,166	+		GFF3263	0.68	+0.2
3,319,222	+		GFF3263	0.71	-0.7
3,319,226	+		GFF3263	0.71	+0.5
3,319,226	+		GFF3263	0.71	+0.3
3,319,236	+		GFF3263	0.72	+0.2
3,319,236	+		GFF3263	0.72	+0.9
3,319,236	+		GFF3263	0.72	+0.1
3,319,244	-		GFF3263	0.72	-0.3
3,319,244	-		GFF3263	0.72	+0.1
3,319,244	-		GFF3263	0.72	-1.9
3,319,244	-		GFF3263	0.72	-0.6
3,319,259	-		GFF3263	0.73	-0.7
3,319,270	+		GFF3263	0.74	-0.8
3,319,286	-		GFF3263	0.75	+1.8
3,319,286	-		GFF3263	0.75	-1.3
3,319,301	-		GFF3263	0.75	-2.1
3,319,304	-		GFF3263	0.76	-1.5
3,319,321	+		GFF3263	0.77	-0.8
3,319,323	-		GFF3263	0.77	-1.8
3,319,339	-		GFF3263	0.77	+0.6
3,319,341	+		GFF3263	0.78	-1.1
3,319,341	+		GFF3263	0.78	-1.8
3,319,341	+		GFF3263	0.78	-0.9
3,319,351	+		GFF3263	0.78	+0.1
3,319,386	+		GFF3263	0.80	+0.1
3,319,394	-		GFF3263	0.80	-2.0
3,319,439	+		GFF3263	0.83	+1.0
3,319,455	-		GFF3263	0.84	-0.2
3,319,457	-		GFF3263	0.84	+0.8
3,319,478	+		GFF3263	0.85	+0.3
3,319,496	-		GFF3263	0.86	-0.3
3,319,532	-		GFF3263	0.88	-1.5
3,319,550	-		GFF3263	0.89	+1.7
3,319,585	-				-1.2
3,319,585	-				+0.9
3,319,591	+				+0.5
3,319,594	-				+0.2
3,319,599	-				-0.1
3,319,656	+				-2.4
3,319,672	+				+0.7
3,319,680	-				+0.9
3,319,689	+				-0.8
3,319,690	+				-0.9
3,319,699	+				+0.4
3,319,699	+				+1.0
3,319,699	+				+1.1
3,319,699	+				+0.4
3,319,699	+				-0.3
3,319,699	+				-0.3
3,319,702	-				+0.1
3,319,704	+				-1.5
3,319,707	-				+0.2
3,319,707	-				-0.7
3,319,707	-				-0.1
3,319,731	-				-0.6
3,319,745	+				-1.3
3,319,795	-				+0.9
3,319,812	+				-0.8
3,319,812	+				+0.6
3,320,466	+				+1.5
3,320,471	+				+0.2
3,320,471	+				-1.3
3,320,474	-				-2.3
3,320,486	-				-0.1
3,320,489	+				-1.2
3,320,497	-				-2.0
3,320,497	-				-0.5
3,320,502	-				-0.5
3,320,559	-				-0.1
3,320,566	-				-1.2
3,320,574	-				-0.8
3,320,574	-				-0.7
3,320,576	+				+0.2
3,320,584	-				+0.0
3,320,585	-				-0.3
3,320,638	+		GFF3265	0.14	-1.1
3,320,646	-		GFF3265	0.15	-2.3
3,320,665	-		GFF3265	0.17	-2.4
3,320,670	+		GFF3265	0.18	+0.7
3,320,695	-		GFF3265	0.20	+0.7
3,320,710	+		GFF3265	0.22	+0.1
3,320,713	-		GFF3265	0.22	+0.6
3,320,722	+		GFF3265	0.23	+0.2
3,320,733	+		GFF3265	0.24	+0.4
3,320,733	+		GFF3265	0.24	-1.0
3,320,733	+		GFF3265	0.24	-2.1
3,320,736	-		GFF3265	0.25	-0.9
3,320,736	-		GFF3265	0.25	+0.0
3,320,738	+		GFF3265	0.25	+1.4
3,320,741	-		GFF3265	0.25	-0.1
3,320,741	-		GFF3265	0.25	-0.1
3,320,741	-		GFF3265	0.25	-1.2
3,320,749	+		GFF3265	0.26	+0.2
3,320,751	-		GFF3265	0.26	-0.5